Protein–RNA interactions for Protein: O75112

LDB3, LIM domain-binding protein 3, humanhuman

Predictions only

Length 727 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LDB3O75112 REM2-201ENST00000267396 1923 ntAPPRIS P1 TSL 1 (best) BASIC18.85■□□□□ 0.61
LDB3O75112 ARHGAP5-203ENST00000396582 5786 ntTSL 1 (best) BASIC18.85■□□□□ 0.61
LDB3O75112 MT3-201ENST00000200691 569 ntAPPRIS P1 TSL 1 (best) BASIC18.85■□□□□ 0.61
LDB3O75112 CFC1-201ENST00000259216 1046 ntAPPRIS P1 TSL 1 (best) BASIC18.85■□□□□ 0.61
LDB3O75112 CFC1B-201ENST00000281882 1071 ntAPPRIS P1 TSL 1 (best) BASIC18.85■□□□□ 0.61
LDB3O75112 RNF5-203ENST00000375094 1168 ntAPPRIS P1 TSL 1 (best) BASIC18.85■□□□□ 0.61
LDB3O75112 LY6E-202ENST00000429120 1173 ntAPPRIS P2 TSL 1 (best) BASIC18.85■□□□□ 0.61
LDB3O75112 AC008667.2-201ENST00000504413 469 ntTSL 3 BASIC18.85■□□□□ 0.61
LDB3O75112 SMIM20-201ENST00000506197 935 ntAPPRIS P1 TSL 1 (best) BASIC18.85■□□□□ 0.61
LDB3O75112 ABCC3-217ENST00000515707 656 ntTSL 3 BASIC18.85■□□□□ 0.61
LDB3O75112 FADS3-204ENST00000525588 1254 ntTSL 5 BASIC18.85■□□□□ 0.61
LDB3O75112 ASPSCR1-211ENST00000581647 720 ntTSL 2 BASIC18.85■□□□□ 0.61
LDB3O75112 PSME3-210ENST00000590720 998 ntAPPRIS P1 TSL 1 (best) BASIC18.85■□□□□ 0.61
LDB3O75112 INO80E-214ENST00000620599 515 ntTSL 2 BASIC18.85■□□□□ 0.61
LDB3O75112 HLA-B-256ENST00000639848 1089 ntBASIC18.85■□□□□ 0.61
LDB3O75112 FUBP3-201ENST00000319725 3124 ntAPPRIS P1 TSL 1 (best) BASIC18.85■□□□□ 0.61
LDB3O75112 RNF8-204ENST00000469731 1800 ntTSL 5 BASIC18.85■□□□□ 0.61
LDB3O75112 TINAGL1-211ENST00000537531 1841 ntAPPRIS ALT2 TSL 5 BASIC18.85■□□□□ 0.61
LDB3O75112 SMIM10L2A-201ENST00000417443 5230 ntAPPRIS P1 TSL 1 (best) BASIC18.85■□□□□ 0.61
LDB3O75112 PDZD3-201ENST00000322712 2204 ntTSL 1 (best) BASIC18.85■□□□□ 0.61
LDB3O75112 ACHE-203ENST00000411582 2179 ntTSL 1 (best) BASIC18.85■□□□□ 0.61
LDB3O75112 TEX22-201ENST00000451127 2571 ntAPPRIS P1 TSL 2 BASIC18.85■□□□□ 0.61
LDB3O75112 WT1-211ENST00000639907 1545 ntAPPRIS ALT2 TSL 2 BASIC18.84■□□□□ 0.61
LDB3O75112 PFKFB3-202ENST00000360521 1964 ntAPPRIS P2 TSL 5 BASIC18.84■□□□□ 0.61
LDB3O75112 UBR2-203ENST00000372903 2423 ntTSL 1 (best) BASIC18.84■□□□□ 0.61
LDB3O75112 FAM170B-201ENST00000311787 1401 ntAPPRIS P1 TSL 1 (best) BASIC18.84■□□□□ 0.61
LDB3O75112 KRT8P17-201ENST00000453110 1448 ntBASIC18.84■□□□□ 0.61
LDB3O75112 DYRK2-202ENST00000344096 8912 ntAPPRIS P4 TSL 1 (best) BASIC18.84■□□□□ 0.61
LDB3O75112 AUNIP-203ENST00000538789 1392 ntTSL 1 (best) BASIC18.84■□□□□ 0.61
LDB3O75112 BRSK2-212ENST00000531197 3163 ntAPPRIS ALT2 TSL 1 (best) BASIC18.84■□□□□ 0.61
LDB3O75112 APBB3-203ENST00000357560 2218 ntAPPRIS P3 TSL 5 BASIC18.84■□□□□ 0.61
LDB3O75112 MFSD10-211ENST00000514800 1776 ntTSL 5 BASIC18.84■□□□□ 0.61
LDB3O75112 PRAF2-202ENST00000553851 1334 ntAPPRIS P1 TSL 1 (best) BASIC18.84■□□□□ 0.61
LDB3O75112 PKMYT1-201ENST00000262300 2171 ntTSL 1 (best) BASIC18.84■□□□□ 0.61
LDB3O75112 FAM213A-202ENST00000372185 1723 ntTSL 2 BASIC18.84■□□□□ 0.61
LDB3O75112 ARL2-201ENST00000246747 979 ntAPPRIS P1 TSL 1 (best) BASIC18.84■□□□□ 0.61
LDB3O75112 FAM160B1-201ENST00000369246 666 ntTSL 2 BASIC18.84■□□□□ 0.61
LDB3O75112 TPD52L1-207ENST00000527711 999 ntTSL 2 BASIC18.84■□□□□ 0.61
LDB3O75112 LINC00304-202ENST00000562248 1095 ntTSL 1 (best) BASIC18.84■□□□□ 0.61
LDB3O75112 AC060766.5-201ENST00000590539 871 ntBASIC18.84■□□□□ 0.61
LDB3O75112 AL031963.3-201ENST00000606441 850 ntBASIC18.84■□□□□ 0.61
LDB3O75112 CD99-210ENST00000611428 1243 ntAPPRIS ALT2 TSL 1 (best) BASIC18.84■□□□□ 0.61
LDB3O75112 SSH3-202ENST00000308298 2046 ntTSL 2 BASIC18.84■□□□□ 0.61
LDB3O75112 ETV2-202ENST00000379026 1571 ntAPPRIS ALT2 TSL 2 BASIC18.84■□□□□ 0.61
LDB3O75112 AC099778.1-201ENST00000568593 1911 ntBASIC18.84■□□□□ 0.61
LDB3O75112 NR2F2-201ENST00000394166 5275 ntAPPRIS P1 TSL 1 (best) BASIC18.84■□□□□ 0.61
LDB3O75112 AL390879.2-201ENST00000424306 2222 ntTSL 2 BASIC18.84■□□□□ 0.61
LDB3O75112 DBNDD2-206ENST00000372720 1481 ntTSL 1 (best) BASIC18.84■□□□□ 0.61
LDB3O75112 SUMO3-201ENST00000332859 1807 ntAPPRIS P1 TSL 1 (best) BASIC18.84■□□□□ 0.61
LDB3O75112 TEAD2-210ENST00000601519 2167 ntAPPRIS ALT1 TSL 1 (best) BASIC18.83■□□□□ 0.61
LDB3O75112 KRT8P20-201ENST00000423953 1409 ntBASIC18.83■□□□□ 0.61
LDB3O75112 SOCS2-210ENST00000551556 1716 ntAPPRIS P1 TSL 1 (best) BASIC18.83■□□□□ 0.61
LDB3O75112 NMRAL1-213ENST00000574733 1719 ntAPPRIS P1 TSL 5 BASIC18.83■□□□□ 0.61
LDB3O75112 MARK2-204ENST00000402010 4728 ntAPPRIS ALT2 TSL 1 (best) BASIC18.83■□□□□ 0.61
LDB3O75112 KATNAL2-208ENST00000592005 1348 ntTSL 1 (best) BASIC18.83■□□□□ 0.61
LDB3O75112 FAM66B-202ENST00000606573 2630 ntTSL 1 (best) BASIC18.83■□□□□ 0.61
LDB3O75112 NPAS1-207ENST00000602189 1643 ntTSL 5 BASIC18.83■□□□□ 0.61
LDB3O75112 ZPBP-203ENST00000419417 1095 ntAPPRIS ALT2 TSL 1 (best) BASIC18.83■□□□□ 0.6
LDB3O75112 NCBP2-207ENST00000452404 1133 ntTSL 2 BASIC18.83■□□□□ 0.6
LDB3O75112 AP000282.1-201ENST00000454622 682 ntTSL 2 BASIC18.83■□□□□ 0.6
LDB3O75112 AC023632.3-201ENST00000521633 145 ntBASIC18.83■□□□□ 0.6
LDB3O75112 PNMA6B-201ENST00000538162 1200 ntBASIC18.83■□□□□ 0.6
LDB3O75112 MCRIP1-203ENST00000538396 925 ntAPPRIS P1 TSL 1 (best) BASIC18.83■□□□□ 0.6
LDB3O75112 IGFBP6-203ENST00000548547 1177 ntAPPRIS ALT2 TSL 5 BASIC18.83■□□□□ 0.6
LDB3O75112 PSMC3IP-208ENST00000590760 664 ntTSL 1 (best) BASIC18.83■□□□□ 0.6
LDB3O75112 CDKN1C-203ENST00000430149 1570 ntAPPRIS P3 TSL 1 (best) BASIC18.83■□□□□ 0.6
LDB3O75112 GSEC-202ENST00000629441 1572 ntTSL 2 BASIC18.83■□□□□ 0.6
LDB3O75112 IL17RC-202ENST00000383812 2384 ntAPPRIS ALT2 TSL 1 (best) BASIC18.83■□□□□ 0.6
LDB3O75112 LINC00482-201ENST00000332012 2023 ntTSL 1 (best) BASIC18.83■□□□□ 0.6
LDB3O75112 USP39-204ENST00000409766 2033 ntTSL 2 BASIC18.83■□□□□ 0.6
LDB3O75112 ASCL5-201ENST00000449188 2026 ntAPPRIS P1 TSL 3 BASIC18.83■□□□□ 0.6
LDB3O75112 ST6GALNAC6-215ENST00000542456 2018 ntTSL 2 BASIC18.83■□□□□ 0.6
LDB3O75112 ABHD1-201ENST00000316470 1400 ntAPPRIS P1 TSL 1 (best) BASIC18.83■□□□□ 0.6
LDB3O75112 ZNF852-201ENST00000436261 1968 ntAPPRIS P1 TSL 2 BASIC18.82■□□□□ 0.6
LDB3O75112 MATR3-206ENST00000503811 2518 ntTSL 2 BASIC18.82■□□□□ 0.6
LDB3O75112 GRK4-203ENST00000398052 2202 ntAPPRIS P1 TSL 1 (best) BASIC18.82■□□□□ 0.6
LDB3O75112 PYURF-201ENST00000273968 1361 ntAPPRIS P1 TSL 1 (best) BASIC18.82■□□□□ 0.6
LDB3O75112 MAPT-203ENST00000340799 5724 ntAPPRIS ALT2 TSL 1 (best) BASIC18.82■□□□□ 0.6
LDB3O75112 MAG-201ENST00000361922 2426 ntAPPRIS ALT2 TSL 1 (best) BASIC18.82■□□□□ 0.6
LDB3O75112 SUSD1-204ENST00000374270 3124 ntAPPRIS P3 TSL 1 (best) BASIC18.82■□□□□ 0.6
LDB3O75112 RTBDN-207ENST00000589272 2076 ntTSL 2 BASIC18.82■□□□□ 0.6
LDB3O75112 REXO2-201ENST00000265881 1161 ntAPPRIS P1 TSL 1 (best) BASIC18.82■□□□□ 0.6
LDB3O75112 C11orf86-201ENST00000308963 1187 ntAPPRIS P1 TSL 2 BASIC18.82■□□□□ 0.6
LDB3O75112 AL807752.2-201ENST00000435463 301 ntTSL 3 BASIC18.82■□□□□ 0.6
LDB3O75112 AL161908.1-201ENST00000451449 449 ntTSL 2 BASIC18.82■□□□□ 0.6
LDB3O75112 C5orf38-206ENST00000505778 509 ntAPPRIS ALT2 TSL 1 (best) BASIC18.82■□□□□ 0.6
LDB3O75112 REXO2-208ENST00000539754 791 ntTSL 2 BASIC18.82■□□□□ 0.6
LDB3O75112 AC006557.6-201ENST00000623071 864 ntBASIC18.82■□□□□ 0.6
LDB3O75112 HDHD5-201ENST00000155674 1735 ntAPPRIS P3 TSL 1 (best) BASIC18.82■□□□□ 0.6
LDB3O75112 EPN2-212ENST00000575595 1491 ntTSL 2 BASIC18.82■□□□□ 0.6
LDB3O75112 ADAP1-218ENST00000617043 1946 ntTSL 2 BASIC18.82■□□□□ 0.6
LDB3O75112 KCNK4-201ENST00000394525 1673 ntAPPRIS P1 TSL 1 (best) BASIC18.82■□□□□ 0.6
LDB3O75112 INTS11-208ENST00000435064 2148 ntAPPRIS P1 TSL 1 (best) BASIC18.82■□□□□ 0.6
LDB3O75112 CPT2-203ENST00000635862 2319 ntTSL 5 BASIC18.82■□□□□ 0.6
LDB3O75112 DND1-201ENST00000542735 1605 ntAPPRIS P1 TSL 1 (best) BASIC18.82■□□□□ 0.6
LDB3O75112 HMOX1-201ENST00000216117 1822 ntAPPRIS P1 TSL 1 (best) BASIC18.81■□□□□ 0.6
LDB3O75112 NAE1-201ENST00000290810 1837 ntAPPRIS P1 TSL 1 (best) BASIC18.81■□□□□ 0.6
LDB3O75112 AC073130.3-201ENST00000624389 2278 ntBASIC18.81■□□□□ 0.6
LDB3O75112 ASPHD1-201ENST00000308748 1584 ntAPPRIS P2 TSL 1 (best) BASIC18.81■□□□□ 0.6
LDB3O75112 GLT8D1-213ENST00000491606 1577 ntAPPRIS P1 TSL 5 BASIC18.81■□□□□ 0.6
Retrieved 100 of 98,524 protein–RNA pairs in 40.9 ms