Protein–RNA interactions for Protein: O15457

MSH4, MutS protein homolog 4, humanhuman

Predictions only

Length 936 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
MSH4O15457 MAG-202ENST00000392213 2390 ntAPPRIS P4 TSL 1 (best) BASIC22.56■■□□□ 1.2
MSH4O15457 D2HGDH-201ENST00000321264 2617 ntAPPRIS P1 TSL 1 (best) BASIC22.56■■□□□ 1.2
MSH4O15457 PPARG-202ENST00000309576 1870 ntAPPRIS ALT1 TSL 2 BASIC22.56■■□□□ 1.2
MSH4O15457 TIMP4-201ENST00000287814 1650 ntAPPRIS P1 TSL 1 (best) BASIC22.55■■□□□ 1.2
MSH4O15457 ST3GAL3-239ENST00000545417 1667 ntTSL 5 BASIC22.55■■□□□ 1.2
MSH4O15457 GLT8D1-213ENST00000491606 1577 ntAPPRIS P1 TSL 5 BASIC22.55■■□□□ 1.2
MSH4O15457 SUMO3-201ENST00000332859 1807 ntAPPRIS P1 TSL 1 (best) BASIC22.55■■□□□ 1.2
MSH4O15457 INTS11-202ENST00000411962 1832 ntTSL 5 BASIC22.55■■□□□ 1.2
MSH4O15457 TINAGL1-211ENST00000537531 1841 ntAPPRIS ALT2 TSL 5 BASIC22.55■■□□□ 1.2
MSH4O15457 CDK5R2-201ENST00000302625 2508 ntAPPRIS P1 BASIC22.55■■□□□ 1.2
MSH4O15457 FAM167B-201ENST00000373582 936 ntAPPRIS P1 TSL 1 (best) BASIC22.55■■□□□ 1.2
MSH4O15457 TMEM240-202ENST00000425828 717 ntAPPRIS P1 TSL 2 BASIC22.55■■□□□ 1.2
MSH4O15457 LINC00708-201ENST00000428165 916 ntTSL 1 (best) BASIC22.55■■□□□ 1.2
MSH4O15457 COX6C-208ENST00000522940 694 ntAPPRIS P1 TSL 3 BASIC22.55■■□□□ 1.2
MSH4O15457 MIR381HG-201ENST00000553692 425 ntTSL 3 BASIC22.55■■□□□ 1.2
MSH4O15457 B4GALNT1-213ENST00000552350 1649 ntTSL 4 BASIC22.55■■□□□ 1.2
MSH4O15457 STAU2-229ENST00000524300 3065 ntAPPRIS P4 TSL 2 BASIC22.55■■□□□ 1.2
MSH4O15457 TDRD10-202ENST00000368482 2331 ntAPPRIS P3 TSL 1 (best) BASIC22.54■■□□□ 1.2
MSH4O15457 TREX2-206ENST00000370232 1864 ntTSL 1 (best) BASIC22.54■■□□□ 1.2
MSH4O15457 KIAA0895-204ENST00000415803 2865 ntTSL 1 (best) BASIC22.54■■□□□ 1.2
MSH4O15457 COPS9-201ENST00000307266 759 ntTSL 1 (best) BASIC22.54■■□□□ 1.2
MSH4O15457 HIST1H2AM-201ENST00000359611 393 ntAPPRIS P1 BASIC22.54■■□□□ 1.2
MSH4O15457 MAGI2-AS3-211ENST00000451809 707 ntTSL 3 BASIC22.54■■□□□ 1.2
MSH4O15457 AC098590.1-201ENST00000468126 897 ntBASIC22.54■■□□□ 1.2
MSH4O15457 TSPAN14-209ENST00000481124 808 ntTSL 2 BASIC22.54■■□□□ 1.2
MSH4O15457 AL162258.1-201ENST00000497086 753 ntTSL 2 BASIC22.54■■□□□ 1.2
MSH4O15457 ANXA2-201ENST00000332680 1444 ntTSL 1 (best) BASIC22.54■■□□□ 1.2
MSH4O15457 FAM66B-201ENST00000529456 1432 ntTSL 2 BASIC22.54■■□□□ 1.2
MSH4O15457 DDX31-206ENST00000480876 1333 ntTSL 1 (best) BASIC22.54■■□□□ 1.2
MSH4O15457 IL11RA-201ENST00000318041 1728 ntAPPRIS P1 TSL 1 (best) BASIC22.54■■□□□ 1.2
MSH4O15457 FAM129C-203ENST00000449408 2004 ntAPPRIS ALT2 TSL 2 BASIC22.53■■□□□ 1.2
MSH4O15457 PACSIN3-211ENST00000539589 2009 ntAPPRIS P1 TSL 2 BASIC22.53■■□□□ 1.2
MSH4O15457 ETV7-206ENST00000615781 1776 ntTSL 1 (best) BASIC22.53■■□□□ 1.2
MSH4O15457 LENG9-203ENST00000611161 1916 ntAPPRIS P1 BASIC22.53■■□□□ 1.2
MSH4O15457 AL606970.3-201ENST00000446811 2246 ntTSL 2 BASIC22.53■■□□□ 1.2
MSH4O15457 FLCN-203ENST00000389169 1692 ntTSL 1 (best) BASIC22.53■■□□□ 1.2
MSH4O15457 POMC-201ENST00000264708 1074 ntAPPRIS P1 TSL 2 BASIC22.53■■□□□ 1.2
MSH4O15457 ABHD14A-201ENST00000273596 1062 ntAPPRIS P1 TSL 1 (best) BASIC22.53■■□□□ 1.2
MSH4O15457 F8A2-201ENST00000369505 1116 ntAPPRIS P1 BASIC22.53■■□□□ 1.2
MSH4O15457 AC079145.1-201ENST00000416575 541 ntTSL 2 BASIC22.53■■□□□ 1.2
MSH4O15457 FAM163B-202ENST00000496132 811 ntAPPRIS P1 TSL 3 BASIC22.53■■□□□ 1.2
MSH4O15457 DDN-AS1-201ENST00000547395 858 ntTSL 2 BASIC22.53■■□□□ 1.2
MSH4O15457 C14orf144-202ENST00000555282 854 ntTSL 3 BASIC22.53■■□□□ 1.2
MSH4O15457 GOSR2-208ENST00000573224 1115 ntTSL 5 BASIC22.53■■□□□ 1.2
MSH4O15457 CD24-208ENST00000622315 825 ntAPPRIS ALT2 TSL 2 BASIC22.53■■□□□ 1.2
MSH4O15457 RAD23A-203ENST00000586534 1746 ntAPPRIS P3 TSL 1 (best) BASIC22.53■■□□□ 1.2
MSH4O15457 KMT5B-204ENST00000402185 1881 ntTSL 2 BASIC22.53■■□□□ 1.2
MSH4O15457 PHOSPHO1-202ENST00000413580 2173 ntTSL 2 BASIC22.53■■□□□ 1.2
MSH4O15457 CDKN2B-AS1-217ENST00000585267 1337 ntTSL 1 (best) BASIC22.53■■□□□ 1.2
MSH4O15457 SLC16A5-201ENST00000329783 1934 ntAPPRIS P2 TSL 1 (best) BASIC22.53■■□□□ 1.2
MSH4O15457 DYRK3-202ENST00000367108 2218 ntTSL 1 (best) BASIC22.53■■□□□ 1.2
MSH4O15457 MAGI2-201ENST00000354212 6880 ntAPPRIS P3 TSL 1 (best) BASIC22.53■■□□□ 1.2
MSH4O15457 NAE1-201ENST00000290810 1837 ntAPPRIS P1 TSL 1 (best) BASIC22.52■■□□□ 1.2
MSH4O15457 HSD11B1L-204ENST00000411793 1362 ntTSL 1 (best) BASIC22.52■■□□□ 1.2
MSH4O15457 RNASET2-214ENST00000620173 1391 ntTSL 5 BASIC22.52■■□□□ 1.2
MSH4O15457 HABP4-201ENST00000375249 2615 ntAPPRIS P1 TSL 1 (best) BASIC22.52■■□□□ 1.2
MSH4O15457 CLK3-202ENST00000395066 2621 ntTSL 1 (best) BASIC22.52■■□□□ 1.2
MSH4O15457 DISC1-213ENST00000537876 2349 ntAPPRIS ALT2 TSL 2 BASIC22.52■■□□□ 1.2
MSH4O15457 NDRG2-215ENST00000553503 2162 ntAPPRIS ALT1 TSL 1 (best) BASIC22.52■■□□□ 1.2
MSH4O15457 GUCY1A3-210ENST00000513574 2656 ntAPPRIS P1 TSL 1 (best) BASIC22.52■■□□□ 1.2
MSH4O15457 BX119927.1-201ENST00000636596 1552 ntBASIC22.52■■□□□ 1.2
MSH4O15457 AC007383.3-201ENST00000453039 1411 ntTSL 3 BASIC22.52■■□□□ 1.2
MSH4O15457 AP001458.2-201ENST00000528405 577 ntAPPRIS P1 TSL 4 BASIC22.52■■□□□ 1.2
MSH4O15457 IRX5-204ENST00000560154 879 ntTSL 5 BASIC22.52■■□□□ 1.2
MSH4O15457 CES1P1-204ENST00000574030 877 ntTSL 1 (best) BASIC22.52■■□□□ 1.2
MSH4O15457 RN7SL471P-201ENST00000580476 299 ntBASIC22.52■■□□□ 1.2
MSH4O15457 LINC00654-202ENST00000589201 579 ntTSL 3 BASIC22.52■■□□□ 1.2
MSH4O15457 NCBP2-AS2-201ENST00000602845 918 ntAPPRIS P1 BASIC22.52■■□□□ 1.2
MSH4O15457 MTDHP1-201ENST00000605323 784 ntBASIC22.52■■□□□ 1.2
MSH4O15457 IRX5-205ENST00000620085 881 ntTSL 1 (best) BASIC22.52■■□□□ 1.2
MSH4O15457 JADE2-204ENST00000402835 2797 ntTSL 5 BASIC22.52■■□□□ 1.2
MSH4O15457 ESX1-201ENST00000372588 1495 ntAPPRIS P1 TSL 1 (best) BASIC22.52■■□□□ 1.2
MSH4O15457 CEBPA-201ENST00000498907 2631 ntAPPRIS P1 BASIC22.52■■□□□ 1.2
MSH4O15457 PCMT1-205ENST00000464889 1984 ntAPPRIS P3 TSL 1 (best) BASIC22.52■■□□□ 1.2
MSH4O15457 DHRS4-204ENST00000543741 1340 ntTSL 2 BASIC22.52■■□□□ 1.2
MSH4O15457 RALGPS1-204ENST00000373436 1667 ntTSL 1 (best) BASIC22.52■■□□□ 1.2
MSH4O15457 AL158151.1-201ENST00000372490 2047 ntTSL 2 BASIC22.52■■□□□ 1.19
MSH4O15457 PDZRN3-202ENST00000308537 1136 ntTSL 1 (best) BASIC22.51■■□□□ 1.19
MSH4O15457 FLYWCH2-202ENST00000396958 1036 ntAPPRIS P2 TSL 1 (best) BASIC22.51■■□□□ 1.19
MSH4O15457 JPT2-204ENST00000561516 1065 ntTSL 1 (best) BASIC22.51■■□□□ 1.19
MSH4O15457 CIRBP-213ENST00000587323 1092 ntTSL 5 BASIC22.51■■□□□ 1.19
MSH4O15457 OTUB1-210ENST00000541478 1803 ntTSL 5 BASIC22.51■■□□□ 1.19
MSH4O15457 EPHA6-202ENST00000470610 2058 ntTSL 2 BASIC22.51■■□□□ 1.19
MSH4O15457 ACTR8-202ENST00000482349 2091 ntTSL 2 BASIC22.51■■□□□ 1.19
MSH4O15457 ANKLE1-204ENST00000594072 2294 ntTSL 5 BASIC22.51■■□□□ 1.19
MSH4O15457 ESR2-204ENST00000353772 2454 ntTSL 1 (best) BASIC22.51■■□□□ 1.19
MSH4O15457 OSR2-202ENST00000435298 1736 ntTSL 1 (best) BASIC22.51■■□□□ 1.19
MSH4O15457 RUFY3-203ENST00000417478 2143 ntTSL 1 (best) BASIC22.51■■□□□ 1.19
MSH4O15457 EIF2B1-204ENST00000537073 1768 ntTSL 2 BASIC22.5■■□□□ 1.19
MSH4O15457 AL391422.3-201ENST00000603791 2761 ntBASIC22.5■■□□□ 1.19
MSH4O15457 CIZ1-204ENST00000372938 2984 ntAPPRIS P3 TSL 1 (best) BASIC22.5■■□□□ 1.19
MSH4O15457 C20orf204-205ENST00000636176 961 ntAPPRIS P5 TSL 5 BASIC22.5■■□□□ 1.19
MSH4O15457 NYAP1-202ENST00000454988 2777 ntTSL 5 BASIC22.5■■□□□ 1.19
MSH4O15457 GLIPR2-203ENST00000396613 1917 ntTSL 4 BASIC22.5■■□□□ 1.19
MSH4O15457 TMEM161A-202ENST00000450333 1930 ntTSL 2 BASIC22.5■■□□□ 1.19
MSH4O15457 FNIP1-204ENST00000511848 1720 ntTSL 1 (best) BASIC22.5■■□□□ 1.19
MSH4O15457 GNA11-201ENST00000078429 4147 ntAPPRIS P1 TSL 1 (best) BASIC22.5■■□□□ 1.19
MSH4O15457 LINC00482-201ENST00000332012 2023 ntTSL 1 (best) BASIC22.5■■□□□ 1.19
MSH4O15457 SLC44A3-203ENST00000446120 2094 ntTSL 2 BASIC22.5■■□□□ 1.19
MSH4O15457 WDR45-207ENST00000376372 1639 ntAPPRIS P1 TSL 1 (best) BASIC22.49■■□□□ 1.19
Retrieved 100 of 98,524 protein–RNA pairs in 173.7 ms