Protein–RNA interactions for Protein: A0A087X0R7

SENP3-EIF4A1, SENP3-EIF4A1 readthrough (NMD candidate) (Fragment), humanhuman

Predictions only

Length 540 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SENP3-EIF4A1A0A087X0R7 AC092720.2-201ENST00000602388 1665 ntBASIC26.98■■□□□ 1.91
SENP3-EIF4A1A0A087X0R7 WEE1-202ENST00000450114 2799 ntAPPRIS P1 TSL 1 (best) BASIC26.98■■□□□ 1.91
SENP3-EIF4A1A0A087X0R7 TMEM79-201ENST00000295694 2191 ntAPPRIS P1 TSL 1 (best) BASIC26.98■■□□□ 1.91
SENP3-EIF4A1A0A087X0R7 CENPS-CORT-204ENST00000602296 1326 ntTSL 3 BASIC26.98■■□□□ 1.91
SENP3-EIF4A1A0A087X0R7 SYT5-202ENST00000537500 2612 ntAPPRIS P1 TSL 2 BASIC26.98■■□□□ 1.91
SENP3-EIF4A1A0A087X0R7 RNPS1-201ENST00000301730 1276 ntAPPRIS P1 TSL 2 BASIC26.98■■□□□ 1.91
SENP3-EIF4A1A0A087X0R7 ZNF580-201ENST00000325333 1261 ntAPPRIS P1 TSL 1 (best) BASIC26.98■■□□□ 1.91
SENP3-EIF4A1A0A087X0R7 TRAPPC3-204ENST00000373166 1265 ntAPPRIS P1 TSL 1 (best) BASIC26.98■■□□□ 1.91
SENP3-EIF4A1A0A087X0R7 RARRES2P4-201ENST00000514074 484 ntBASIC26.98■■□□□ 1.91
SENP3-EIF4A1A0A087X0R7 ZNF580-203ENST00000545125 1025 ntAPPRIS P1 TSL 3 BASIC26.98■■□□□ 1.91
SENP3-EIF4A1A0A087X0R7 AL445228.2-201ENST00000605589 952 ntBASIC26.98■■□□□ 1.91
SENP3-EIF4A1A0A087X0R7 ACAP3-201ENST00000353662 2280 ntTSL 1 (best) BASIC26.98■■□□□ 1.91
SENP3-EIF4A1A0A087X0R7 FXR2-201ENST00000250113 2957 ntAPPRIS P1 TSL 1 (best) BASIC26.98■■□□□ 1.91
SENP3-EIF4A1A0A087X0R7 SLC25A22-228ENST00000628067 2692 ntAPPRIS P1 TSL 1 (best) BASIC26.98■■□□□ 1.91
SENP3-EIF4A1A0A087X0R7 SAC3D1-205ENST00000531072 1362 ntAPPRIS P1 TSL 2 BASIC26.97■■□□□ 1.91
SENP3-EIF4A1A0A087X0R7 ZIM2-208ENST00000629319 2253 ntAPPRIS P1 TSL 5 BASIC26.97■■□□□ 1.91
SENP3-EIF4A1A0A087X0R7 SPNS1-203ENST00000334536 2027 ntTSL 1 (best) BASIC26.97■■□□□ 1.91
SENP3-EIF4A1A0A087X0R7 SMUG1-202ENST00000337581 1571 ntAPPRIS P1 TSL 2 BASIC26.97■■□□□ 1.91
SENP3-EIF4A1A0A087X0R7 SH3RF3-201ENST00000309415 5803 ntAPPRIS P1 TSL 5 BASIC26.97■■□□□ 1.91
SENP3-EIF4A1A0A087X0R7 BCAT2-208ENST00000598162 1329 ntTSL 1 (best) BASIC26.97■■□□□ 1.91
SENP3-EIF4A1A0A087X0R7 SMAD7-201ENST00000262158 3087 ntAPPRIS P3 TSL 1 (best) BASIC26.97■■□□□ 1.91
SENP3-EIF4A1A0A087X0R7 PRSS3-202ENST00000361005 966 ntTSL 1 (best) BASIC26.97■■□□□ 1.91
SENP3-EIF4A1A0A087X0R7 PET117-201ENST00000432901 1141 ntAPPRIS P1 TSL 1 (best) BASIC26.97■■□□□ 1.91
SENP3-EIF4A1A0A087X0R7 TRIM35-203ENST00000521253 1215 ntTSL 1 (best) BASIC26.97■■□□□ 1.91
SENP3-EIF4A1A0A087X0R7 MSLN-205ENST00000563941 2109 ntAPPRIS ALT2 TSL 1 (best) BASIC26.97■■□□□ 1.91
SENP3-EIF4A1A0A087X0R7 PYCR3-207ENST00000495276 2332 ntAPPRIS ALT2 TSL 1 (best) BASIC26.97■■□□□ 1.91
SENP3-EIF4A1A0A087X0R7 CYP21A1P-202ENST00000354927 1481 ntBASIC26.97■■□□□ 1.91
SENP3-EIF4A1A0A087X0R7 TUSC2-201ENST00000232496 1691 ntAPPRIS P1 TSL 1 (best) BASIC26.97■■□□□ 1.91
SENP3-EIF4A1A0A087X0R7 DPP3P2-201ENST00000416030 1696 ntBASIC26.97■■□□□ 1.91
SENP3-EIF4A1A0A087X0R7 UHRF1-203ENST00000615884 2651 ntAPPRIS P1 TSL 2 BASIC26.97■■□□□ 1.91
SENP3-EIF4A1A0A087X0R7 TP53RK-201ENST00000372102 2012 ntTSL 1 (best) BASIC26.97■■□□□ 1.91
SENP3-EIF4A1A0A087X0R7 LINC00304-201ENST00000321214 2243 ntTSL 2 BASIC26.97■■□□□ 1.91
SENP3-EIF4A1A0A087X0R7 ZNF316-201ENST00000382252 5392 ntAPPRIS P1 TSL 5 BASIC26.97■■□□□ 1.91
SENP3-EIF4A1A0A087X0R7 AL162377.1-201ENST00000618844 1793 ntBASIC26.97■■□□□ 1.91
SENP3-EIF4A1A0A087X0R7 ACADS-202ENST00000411593 1398 ntTSL 2 BASIC26.97■■□□□ 1.91
SENP3-EIF4A1A0A087X0R7 GNAI1-201ENST00000351004 3347 ntAPPRIS P1 TSL 1 (best) BASIC26.96■■□□□ 1.91
SENP3-EIF4A1A0A087X0R7 AC091230.1-202ENST00000564823 5356 ntTSL 2 BASIC26.96■■□□□ 1.91
SENP3-EIF4A1A0A087X0R7 KLC1-219ENST00000555836 2467 ntTSL 5 BASIC26.96■■□□□ 1.91
SENP3-EIF4A1A0A087X0R7 KIAA1522-201ENST00000294521 878 ntAPPRIS ALT2 TSL 2 BASIC26.96■■□□□ 1.91
SENP3-EIF4A1A0A087X0R7 CDV3P1-201ENST00000471403 739 ntBASIC26.96■■□□□ 1.91
SENP3-EIF4A1A0A087X0R7 TMEM9-209ENST00000485839 938 ntAPPRIS P3 TSL 2 BASIC26.96■■□□□ 1.91
SENP3-EIF4A1A0A087X0R7 JOSD2-202ENST00000595669 733 ntTSL 2 BASIC26.96■■□□□ 1.91
SENP3-EIF4A1A0A087X0R7 IGFBP3-211ENST00000615754 792 ntTSL 5 BASIC26.96■■□□□ 1.91
SENP3-EIF4A1A0A087X0R7 CYP21A1P-201ENST00000342991 1971 ntTSL 3 BASIC26.96■■□□□ 1.91
SENP3-EIF4A1A0A087X0R7 MSANTD2-202ENST00000374979 2349 ntAPPRIS P1 TSL 1 (best) BASIC26.96■■□□□ 1.91
SENP3-EIF4A1A0A087X0R7 MMP11-201ENST00000215743 2291 ntAPPRIS P1 TSL 1 (best) BASIC26.96■■□□□ 1.91
SENP3-EIF4A1A0A087X0R7 SLC25A24P1-201ENST00000411846 1569 ntTSL 5 BASIC26.96■■□□□ 1.91
SENP3-EIF4A1A0A087X0R7 SNAP91-211ENST00000520213 2168 ntTSL 1 (best) BASIC26.95■■□□□ 1.91
SENP3-EIF4A1A0A087X0R7 UXS1-203ENST00000409501 1839 ntAPPRIS P3 TSL 1 (best) BASIC26.95■■□□□ 1.91
SENP3-EIF4A1A0A087X0R7 YTHDF3-214ENST00000621890 2296 ntTSL 5 BASIC26.95■■□□□ 1.91
SENP3-EIF4A1A0A087X0R7 ARL5A-202ENST00000428992 747 ntTSL 2 BASIC26.95■■□□□ 1.9
SENP3-EIF4A1A0A087X0R7 FAM47E-204ENST00000510328 1002 ntAPPRIS ALT2 TSL 2 BASIC26.95■■□□□ 1.9
SENP3-EIF4A1A0A087X0R7 PHB2-213ENST00000546111 858 ntTSL 2 BASIC26.95■■□□□ 1.9
SENP3-EIF4A1A0A087X0R7 AL845552.2-201ENST00000553301 553 ntTSL 4 BASIC26.95■■□□□ 1.9
SENP3-EIF4A1A0A087X0R7 AC007993.2-201ENST00000592842 521 ntTSL 4 BASIC26.95■■□□□ 1.9
SENP3-EIF4A1A0A087X0R7 AC093762.2-201ENST00000641700 291 ntAPPRIS P1 BASIC26.95■■□□□ 1.9
SENP3-EIF4A1A0A087X0R7 CLN3-240ENST00000631023 1586 ntTSL 5 BASIC26.95■■□□□ 1.9
SENP3-EIF4A1A0A087X0R7 SAE1-203ENST00000413379 2313 ntTSL 2 BASIC26.95■■□□□ 1.9
SENP3-EIF4A1A0A087X0R7 SUGCT-202ENST00000401647 1369 ntTSL 1 (best) BASIC26.95■■□□□ 1.9
SENP3-EIF4A1A0A087X0R7 ST6GAL2-203ENST00000409087 1657 ntTSL 1 (best) BASIC26.95■■□□□ 1.9
SENP3-EIF4A1A0A087X0R7 FSCN2-202ENST00000417245 1665 ntAPPRIS P1 TSL 1 (best) BASIC26.95■■□□□ 1.9
SENP3-EIF4A1A0A087X0R7 FICD-201ENST00000361549 1816 ntTSL 1 (best) BASIC26.95■■□□□ 1.9
SENP3-EIF4A1A0A087X0R7 AC044802.1-201ENST00000501143 2894 ntTSL 1 (best) BASIC26.95■■□□□ 1.9
SENP3-EIF4A1A0A087X0R7 ADAP1-218ENST00000617043 1946 ntTSL 2 BASIC26.94■■□□□ 1.9
SENP3-EIF4A1A0A087X0R7 TMEM44-203ENST00000381975 2197 ntTSL 1 (best) BASIC26.94■■□□□ 1.9
SENP3-EIF4A1A0A087X0R7 EGFR-204ENST00000420316 1570 ntTSL 1 (best) BASIC26.94■■□□□ 1.9
SENP3-EIF4A1A0A087X0R7 CD58-201ENST00000369487 892 ntAPPRIS ALT2 TSL 1 (best) BASIC26.94■■□□□ 1.9
SENP3-EIF4A1A0A087X0R7 CD58-202ENST00000369489 1098 ntAPPRIS P3 TSL 1 (best) BASIC26.94■■□□□ 1.9
SENP3-EIF4A1A0A087X0R7 KHDC3L-201ENST00000370367 1018 ntAPPRIS P1 TSL 1 (best) BASIC26.94■■□□□ 1.9
SENP3-EIF4A1A0A087X0R7 RAMP1-202ENST00000403885 650 ntTSL 3 BASIC26.94■■□□□ 1.9
SENP3-EIF4A1A0A087X0R7 AP001972.3-201ENST00000530792 495 ntTSL 3 BASIC26.94■■□□□ 1.9
SENP3-EIF4A1A0A087X0R7 BEAN1-AS1-201ENST00000564618 533 ntTSL 4 BASIC26.94■■□□□ 1.9
SENP3-EIF4A1A0A087X0R7 JOSD2-205ENST00000601423 802 ntAPPRIS P1 TSL 1 (best) BASIC26.94■■□□□ 1.9
SENP3-EIF4A1A0A087X0R7 PHOSPHO2-206ENST00000616481 1252 ntAPPRIS P1 TSL 3 BASIC26.94■■□□□ 1.9
SENP3-EIF4A1A0A087X0R7 PHOSPHO2-208ENST00000617738 1053 ntAPPRIS P1 TSL 2 BASIC26.94■■□□□ 1.9
SENP3-EIF4A1A0A087X0R7 AC231657.2-201ENST00000624556 255 ntBASIC26.94■■□□□ 1.9
SENP3-EIF4A1A0A087X0R7 NTN5-201ENST00000270235 1836 ntAPPRIS P1 TSL 1 (best) BASIC26.94■■□□□ 1.9
SENP3-EIF4A1A0A087X0R7 TSSC4-203ENST00000380996 1544 ntAPPRIS ALT2 TSL 1 (best) BASIC26.94■■□□□ 1.9
SENP3-EIF4A1A0A087X0R7 WIPF1-203ENST00000392546 2180 ntAPPRIS P2 TSL 5 BASIC26.94■■□□□ 1.9
SENP3-EIF4A1A0A087X0R7 PPP1CC-201ENST00000335007 2559 ntAPPRIS P1 TSL 1 (best) BASIC26.94■■□□□ 1.9
SENP3-EIF4A1A0A087X0R7 FYN-204ENST00000368678 2573 ntAPPRIS ALT1 TSL 5 BASIC26.94■■□□□ 1.9
SENP3-EIF4A1A0A087X0R7 CPNE9-205ENST00000613455 1742 ntTSL 5 BASIC26.93■■□□□ 1.9
SENP3-EIF4A1A0A087X0R7 MREG-201ENST00000263268 1314 ntAPPRIS P1 TSL 2 BASIC26.93■■□□□ 1.9
SENP3-EIF4A1A0A087X0R7 GSEC-202ENST00000629441 1572 ntTSL 2 BASIC26.93■■□□□ 1.9
SENP3-EIF4A1A0A087X0R7 FOXC1-201ENST00000380874 3926 ntAPPRIS P1 BASIC26.93■■□□□ 1.9
SENP3-EIF4A1A0A087X0R7 NFKBIE-204ENST00000619360 2327 ntAPPRIS P1 TSL 1 (best) BASIC26.93■■□□□ 1.9
SENP3-EIF4A1A0A087X0R7 STARD3-202ENST00000394250 1949 ntTSL 2 BASIC26.93■■□□□ 1.9
SENP3-EIF4A1A0A087X0R7 VKORC1-202ENST00000319788 1077 ntTSL 1 (best) BASIC26.93■■□□□ 1.9
SENP3-EIF4A1A0A087X0R7 AC114730.1-201ENST00000400768 472 ntTSL 4 BASIC26.93■■□□□ 1.9
SENP3-EIF4A1A0A087X0R7 STAG3L3-201ENST00000423834 1262 ntTSL 2 BASIC26.93■■□□□ 1.9
SENP3-EIF4A1A0A087X0R7 LINC01117-201ENST00000443670 699 ntTSL 5 BASIC26.93■■□□□ 1.9
SENP3-EIF4A1A0A087X0R7 PDCD6-206ENST00000507528 1088 ntAPPRIS ALT1 TSL 1 (best) BASIC26.93■■□□□ 1.9
SENP3-EIF4A1A0A087X0R7 FAM32A-205ENST00000589852 1168 ntTSL 1 (best) BASIC26.93■■□□□ 1.9
SENP3-EIF4A1A0A087X0R7 ADAP2-201ENST00000330889 2934 ntAPPRIS P2 TSL 1 (best) BASIC26.93■■□□□ 1.9
SENP3-EIF4A1A0A087X0R7 KRT17P1-201ENST00000399211 1546 ntBASIC26.93■■□□□ 1.9
SENP3-EIF4A1A0A087X0R7 COL13A1-201ENST00000354547 3027 ntAPPRIS ALT2 TSL 5 BASIC26.93■■□□□ 1.9
SENP3-EIF4A1A0A087X0R7 KMT5B-204ENST00000402185 1881 ntTSL 2 BASIC26.93■■□□□ 1.9
SENP3-EIF4A1A0A087X0R7 KBTBD2-201ENST00000304056 3745 ntAPPRIS P1 TSL 1 (best) BASIC26.93■■□□□ 1.9
SENP3-EIF4A1A0A087X0R7 MAZ-214ENST00000568544 1464 ntTSL 2 BASIC26.93■■□□□ 1.9
SENP3-EIF4A1A0A087X0R7 MAST1-208ENST00000591495 1496 ntTSL 5 BASIC26.93■■□□□ 1.9
Retrieved 100 of 98,524 protein–RNA pairs in 13.7 ms