Protein–RNA interactions for Protein: Q9UN37

VPS4A, Vacuolar protein sorting-associated protein 4A, humanhuman

Predictions only

Length 437 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VPS4AQ9UN37 VPS53-201ENST00000291074 2656 ntTSL 1 (best) BASIC19.37■□□□□ 0.69
VPS4AQ9UN37 SLC25A22-228ENST00000628067 2692 ntAPPRIS P1 TSL 1 (best) BASIC19.37■□□□□ 0.69
VPS4AQ9UN37 RELL2-207ENST00000521367 1780 ntTSL 5 BASIC19.37■□□□□ 0.69
VPS4AQ9UN37 TANGO2-217ENST00000456048 2439 ntTSL 2 BASIC19.36■□□□□ 0.69
VPS4AQ9UN37 SMG1P5-201ENST00000411546 2362 ntTSL 1 (best) BASIC19.36■□□□□ 0.69
VPS4AQ9UN37 CASTOR1-201ENST00000404953 1460 ntTSL 5 BASIC19.36■□□□□ 0.69
VPS4AQ9UN37 FXYD3-203ENST00000435734 1467 ntTSL 1 (best) BASIC19.36■□□□□ 0.69
VPS4AQ9UN37 BYSL-201ENST00000230340 2029 ntAPPRIS P1 TSL 1 (best) BASIC19.36■□□□□ 0.69
VPS4AQ9UN37 ZNF511-201ENST00000359035 2004 ntTSL 2 BASIC19.36■□□□□ 0.69
VPS4AQ9UN37 FAM207A-201ENST00000291634 927 ntAPPRIS P3 TSL 1 (best) BASIC19.36■□□□□ 0.69
VPS4AQ9UN37 MAP1LC3A-202ENST00000374837 961 ntTSL 3 BASIC19.36■□□□□ 0.69
VPS4AQ9UN37 ESRRAP1-201ENST00000400596 1257 ntBASIC19.36■□□□□ 0.69
VPS4AQ9UN37 AC009086.2-201ENST00000449759 610 ntAPPRIS P1 TSL 3 BASIC19.36■□□□□ 0.69
VPS4AQ9UN37 TMEM9-209ENST00000485839 938 ntAPPRIS P3 TSL 2 BASIC19.36■□□□□ 0.69
VPS4AQ9UN37 FAM32A-205ENST00000589852 1168 ntTSL 1 (best) BASIC19.36■□□□□ 0.69
VPS4AQ9UN37 XBP1-203ENST00000403532 1824 ntAPPRIS ALT1 TSL 3 BASIC19.36■□□□□ 0.69
VPS4AQ9UN37 ZNF282-203ENST00000479907 1815 ntTSL 2 BASIC19.36■□□□□ 0.69
VPS4AQ9UN37 EPHX3-202ENST00000435261 1771 ntAPPRIS P1 TSL 1 (best) BASIC19.36■□□□□ 0.69
VPS4AQ9UN37 KLHL29-203ENST00000486442 5287 ntAPPRIS P1 TSL 5 BASIC19.36■□□□□ 0.69
VPS4AQ9UN37 HDHD5-201ENST00000155674 1735 ntAPPRIS P3 TSL 1 (best) BASIC19.36■□□□□ 0.69
VPS4AQ9UN37 CSPG5-203ENST00000456150 2089 ntTSL 1 (best) BASIC19.36■□□□□ 0.69
VPS4AQ9UN37 AL512408.1-201ENST00000569378 2000 ntBASIC19.35■□□□□ 0.69
VPS4AQ9UN37 ZSWIM8-220ENST00000604524 5465 ntTSL 5 BASIC19.35■□□□□ 0.69
VPS4AQ9UN37 ABHD12B-202ENST00000353130 1477 ntAPPRIS P3 TSL 1 (best) BASIC19.35■□□□□ 0.69
VPS4AQ9UN37 LBX2-203ENST00000460508 1452 ntTSL 1 (best) BASIC19.35■□□□□ 0.69
VPS4AQ9UN37 ZMAT3-203ENST00000432729 2944 ntAPPRIS ALT1 TSL 2 BASIC19.35■□□□□ 0.69
VPS4AQ9UN37 GTF2IRD2B-208ENST00000619142 1932 ntTSL 1 (best) BASIC19.35■□□□□ 0.69
VPS4AQ9UN37 TPD52-209ENST00000518937 2856 ntTSL 2 BASIC19.35■□□□□ 0.69
VPS4AQ9UN37 GRTP1-203ENST00000375431 1384 ntAPPRIS P3 TSL 1 (best) BASIC19.35■□□□□ 0.69
VPS4AQ9UN37 AL162377.1-201ENST00000618844 1793 ntBASIC19.35■□□□□ 0.69
VPS4AQ9UN37 EGLN2-202ENST00000406058 2150 ntAPPRIS P1 TSL 1 (best) BASIC19.35■□□□□ 0.69
VPS4AQ9UN37 AC007249.2-201ENST00000553181 1737 ntTSL 5 BASIC19.35■□□□□ 0.69
VPS4AQ9UN37 BCL7A-201ENST00000261822 2581 ntAPPRIS P1 TSL 1 (best) BASIC19.35■□□□□ 0.69
VPS4AQ9UN37 DLEU2-203ENST00000425586 1267 ntTSL 1 (best) BASIC19.35■□□□□ 0.69
VPS4AQ9UN37 TERF1P5-201ENST00000477545 1207 ntBASIC19.35■□□□□ 0.69
VPS4AQ9UN37 LINC01578-208ENST00000557147 490 ntTSL 3 BASIC19.35■□□□□ 0.69
VPS4AQ9UN37 AC142381.4-202ENST00000563973 229 ntBASIC19.35■□□□□ 0.69
VPS4AQ9UN37 AC138028.5-201ENST00000566114 558 ntTSL 5 BASIC19.35■□□□□ 0.69
VPS4AQ9UN37 CLN6-207ENST00000566347 981 ntTSL 1 (best) BASIC19.35■□□□□ 0.69
VPS4AQ9UN37 AC069236.1-201ENST00000604339 616 ntBASIC19.35■□□□□ 0.69
VPS4AQ9UN37 AC092118.2-201ENST00000613495 667 ntBASIC19.35■□□□□ 0.69
VPS4AQ9UN37 OGFR-204ENST00000621591 1194 ntTSL 5 BASIC19.35■□□□□ 0.69
VPS4AQ9UN37 OR10C1-204ENST00000622521 1039 ntBASIC19.35■□□□□ 0.69
VPS4AQ9UN37 AC092720.2-201ENST00000602388 1665 ntBASIC19.35■□□□□ 0.69
VPS4AQ9UN37 BZW1-202ENST00000409226 2455 ntTSL 2 BASIC19.35■□□□□ 0.69
VPS4AQ9UN37 COPS7A-208ENST00000538410 1610 ntTSL 3 BASIC19.35■□□□□ 0.69
VPS4AQ9UN37 CACNB2-203ENST00000352115 1911 ntTSL 1 (best) BASIC19.35■□□□□ 0.69
VPS4AQ9UN37 BAG4-202ENST00000432471 1943 ntTSL 1 (best) BASIC19.35■□□□□ 0.69
VPS4AQ9UN37 B4GALT2-204ENST00000434555 1923 ntTSL 1 (best) BASIC19.35■□□□□ 0.69
VPS4AQ9UN37 ZIM2-208ENST00000629319 2253 ntAPPRIS P1 TSL 5 BASIC19.35■□□□□ 0.69
VPS4AQ9UN37 GPR137-201ENST00000313074 1485 ntTSL 5 BASIC19.35■□□□□ 0.69
VPS4AQ9UN37 GPR137-203ENST00000411458 1495 ntTSL 2 BASIC19.35■□□□□ 0.69
VPS4AQ9UN37 FBXW8-201ENST00000309909 2343 ntAPPRIS P1 TSL 1 (best) BASIC19.34■□□□□ 0.69
VPS4AQ9UN37 GATA5-201ENST00000252997 2595 ntAPPRIS P1 TSL 1 (best) BASIC19.34■□□□□ 0.69
VPS4AQ9UN37 AL391244.2-201ENST00000428932 543 ntTSL 2 BASIC19.34■□□□□ 0.69
VPS4AQ9UN37 CYP2T1P-201ENST00000432607 1285 ntBASIC19.34■□□□□ 0.69
VPS4AQ9UN37 AKAIN1-201ENST00000434239 575 ntAPPRIS P1 TSL 2 BASIC19.34■□□□□ 0.69
VPS4AQ9UN37 ZCCHC9-204ENST00000438268 1248 ntAPPRIS P1 TSL 1 (best) BASIC19.34■□□□□ 0.69
VPS4AQ9UN37 ALKBH6-212ENST00000485128 959 ntTSL 5 BASIC19.34■□□□□ 0.69
VPS4AQ9UN37 HTATIP2-208ENST00000532505 595 ntTSL 2 BASIC19.34■□□□□ 0.69
VPS4AQ9UN37 AC011611.3-201ENST00000552367 569 ntTSL 4 BASIC19.34■□□□□ 0.69
VPS4AQ9UN37 C14orf28-204ENST00000557112 1097 ntTSL 5 BASIC19.34■□□□□ 0.69
VPS4AQ9UN37 PET100-202ENST00000594797 719 ntAPPRIS P1 TSL 1 (best) BASIC19.34■□□□□ 0.69
VPS4AQ9UN37 CIRBP-246ENST00000628979 1043 ntTSL 2 BASIC19.34■□□□□ 0.69
VPS4AQ9UN37 DLGAP4-201ENST00000339266 5016 ntAPPRIS ALT2 TSL 5 BASIC19.34■□□□□ 0.69
VPS4AQ9UN37 AC092835.1-201ENST00000425953 1850 ntAPPRIS P1 TSL 5 BASIC19.34■□□□□ 0.69
VPS4AQ9UN37 CRHR1-214ENST00000619154 2370 ntTSL 1 (best) BASIC19.34■□□□□ 0.69
VPS4AQ9UN37 RBM45-207ENST00000616198 1788 ntAPPRIS ALT1 TSL 1 (best) BASIC19.34■□□□□ 0.69
VPS4AQ9UN37 COPS7A-222ENST00000626119 1768 ntTSL 3 BASIC19.34■□□□□ 0.69
VPS4AQ9UN37 TPD52L1-201ENST00000304877 1468 ntAPPRIS ALT2 TSL 2 BASIC19.34■□□□□ 0.69
VPS4AQ9UN37 SSH3-202ENST00000308298 2046 ntTSL 2 BASIC19.34■□□□□ 0.69
VPS4AQ9UN37 EEF1A2-202ENST00000298049 1748 ntAPPRIS P1 TSL 1 (best) BASIC19.34■□□□□ 0.69
VPS4AQ9UN37 FAM213A-202ENST00000372185 1723 ntTSL 2 BASIC19.34■□□□□ 0.69
VPS4AQ9UN37 OTUB1-209ENST00000538426 1729 ntAPPRIS P2 TSL 1 (best) BASIC19.34■□□□□ 0.69
VPS4AQ9UN37 CHRDL2-210ENST00000622063 1691 ntTSL 5 BASIC19.33■□□□□ 0.69
VPS4AQ9UN37 MEF2D-203ENST00000368240 1905 ntTSL 1 (best) BASIC19.33■□□□□ 0.69
VPS4AQ9UN37 ME2-218ENST00000640965 2476 ntTSL 5 BASIC19.33■□□□□ 0.69
VPS4AQ9UN37 CHST8-203ENST00000438847 2133 ntAPPRIS P1 TSL 1 (best) BASIC19.33■□□□□ 0.69
VPS4AQ9UN37 C2CD2-202ENST00000380486 6345 ntAPPRIS P1 TSL 1 (best) BASIC19.33■□□□□ 0.69
VPS4AQ9UN37 FBXO31-201ENST00000311635 5934 ntAPPRIS P1 TSL 1 (best) BASIC19.33■□□□□ 0.69
VPS4AQ9UN37 LIPT2-201ENST00000310109 1018 ntAPPRIS P1 TSL 2 BASIC19.33■□□□□ 0.68
VPS4AQ9UN37 UMAD1-202ENST00000463725 559 ntTSL 4 BASIC19.33■□□□□ 0.68
VPS4AQ9UN37 AC097658.1-201ENST00000475555 843 ntBASIC19.33■□□□□ 0.68
VPS4AQ9UN37 CDKN2A-205ENST00000479692 544 ntTSL 5 BASIC19.33■□□□□ 0.68
VPS4AQ9UN37 CTBP1-AS2-203ENST00000507044 739 ntTSL 3 BASIC19.33■□□□□ 0.68
VPS4AQ9UN37 AC003102.1-201ENST00000588279 569 ntTSL 4 BASIC19.33■□□□□ 0.68
VPS4AQ9UN37 BX649632.1-201ENST00000610187 819 ntTSL 3 BASIC19.33■□□□□ 0.68
VPS4AQ9UN37 AVPR2-202ENST00000358927 1763 ntAPPRIS P1 TSL 5 BASIC19.33■□□□□ 0.68
VPS4AQ9UN37 TOLLIP-201ENST00000263646 2283 ntTSL 5 BASIC19.33■□□□□ 0.68
VPS4AQ9UN37 SPG7-202ENST00000341316 2288 ntTSL 1 (best) BASIC19.33■□□□□ 0.68
VPS4AQ9UN37 ZFP64-206ENST00000371523 2234 ntTSL 2 BASIC19.33■□□□□ 0.68
VPS4AQ9UN37 CBWD3-201ENST00000360171 2165 ntAPPRIS P2 TSL 1 (best) BASIC19.33■□□□□ 0.68
VPS4AQ9UN37 C19orf66-201ENST00000253110 2117 ntAPPRIS P3 TSL 2 BASIC19.33■□□□□ 0.68
VPS4AQ9UN37 LRCH4-211ENST00000619071 2098 ntTSL 5 BASIC19.32■□□□□ 0.68
VPS4AQ9UN37 PITX3-201ENST00000370002 1391 ntAPPRIS P1 TSL 1 (best) BASIC19.32■□□□□ 0.68
VPS4AQ9UN37 OTUB1-210ENST00000541478 1803 ntTSL 5 BASIC19.32■□□□□ 0.68
VPS4AQ9UN37 KLF1-201ENST00000264834 1592 ntAPPRIS P1 TSL 1 (best) BASIC19.32■□□□□ 0.68
VPS4AQ9UN37 ADRA1B-201ENST00000306675 2047 ntAPPRIS P1 TSL 1 (best) BASIC19.32■□□□□ 0.68
VPS4AQ9UN37 AC116050.2-201ENST00000612102 1779 ntBASIC19.32■□□□□ 0.68
VPS4AQ9UN37 PRR7-202ENST00000502922 1345 ntAPPRIS P1 TSL 2 BASIC19.32■□□□□ 0.68
Retrieved 100 of 98,524 protein–RNA pairs in 111.8 ms