Protein–RNA interactions for Protein: Q9UBQ0

VPS29, Vacuolar protein sorting-associated protein 29, humanhuman

Predictions only

Length 182 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VPS29Q9UBQ0 USP21-203ENST00000368002 2342 ntAPPRIS P1 TSL 1 (best) BASIC19.24■□□□□ 0.67
VPS29Q9UBQ0 ZFP64-206ENST00000371523 2234 ntTSL 2 BASIC19.24■□□□□ 0.67
VPS29Q9UBQ0 SNX24-211ENST00000513881 1563 ntTSL 1 (best) BASIC19.24■□□□□ 0.67
VPS29Q9UBQ0 UBTD2-201ENST00000393792 3301 ntAPPRIS P1 TSL 1 (best) BASIC19.24■□□□□ 0.67
VPS29Q9UBQ0 RUVBL2-206ENST00000595090 2009 ntAPPRIS P1 TSL 1 (best) BASIC19.24■□□□□ 0.67
VPS29Q9UBQ0 ENGASE-205ENST00000579016 2579 ntAPPRIS P1 TSL 1 (best) BASIC19.24■□□□□ 0.67
VPS29Q9UBQ0 PCBP3-203ENST00000400308 1911 ntTSL 1 (best) BASIC19.24■□□□□ 0.67
VPS29Q9UBQ0 NDOR1-204ENST00000458322 1829 ntTSL 1 (best) BASIC19.24■□□□□ 0.67
VPS29Q9UBQ0 HYLS1-203ENST00000526028 1803 ntAPPRIS P1 TSL 5 BASIC19.24■□□□□ 0.67
VPS29Q9UBQ0 C19orf73-201ENST00000408991 744 ntAPPRIS P1 BASIC19.24■□□□□ 0.67
VPS29Q9UBQ0 STAG3L3-201ENST00000423834 1262 ntTSL 2 BASIC19.24■□□□□ 0.67
VPS29Q9UBQ0 TRIM35-203ENST00000521253 1215 ntTSL 1 (best) BASIC19.24■□□□□ 0.67
VPS29Q9UBQ0 MMP25-AS1-204ENST00000572574 794 ntTSL 5 BASIC19.24■□□□□ 0.67
VPS29Q9UBQ0 MAZ-216ENST00000616501 991 ntTSL 5 BASIC19.24■□□□□ 0.67
VPS29Q9UBQ0 FNDC5-207ENST00000640867 639 ntAPPRIS P2 TSL 2 BASIC19.24■□□□□ 0.67
VPS29Q9UBQ0 PAIP1-203ENST00000436644 1734 ntAPPRIS ALT1 TSL 1 (best) BASIC19.24■□□□□ 0.67
VPS29Q9UBQ0 FBXL17-205ENST00000542267 5188 ntAPPRIS P1 TSL 1 (best) BASIC19.24■□□□□ 0.67
VPS29Q9UBQ0 RASGRP2-211ENST00000394432 2304 ntAPPRIS P2 TSL 1 (best) BASIC19.24■□□□□ 0.67
VPS29Q9UBQ0 GLS-201ENST00000320717 4834 ntAPPRIS P3 TSL 1 (best) BASIC19.24■□□□□ 0.67
VPS29Q9UBQ0 DMWD-202ENST00000377735 3292 ntAPPRIS ALT2 TSL 5 BASIC19.24■□□□□ 0.67
VPS29Q9UBQ0 NPNT-214ENST00000514622 2362 ntTSL 2 BASIC19.24■□□□□ 0.67
VPS29Q9UBQ0 FAM129C-205ENST00000595684 2265 ntAPPRIS ALT2 TSL 1 (best) BASIC19.23■□□□□ 0.67
VPS29Q9UBQ0 PPTC7-201ENST00000354300 4996 ntAPPRIS P1 TSL 1 (best) BASIC19.23■□□□□ 0.67
VPS29Q9UBQ0 SLC22A23-205ENST00000436008 6641 ntAPPRIS ALT2 TSL 5 BASIC19.23■□□□□ 0.67
VPS29Q9UBQ0 SOX2-201ENST00000325404 2513 ntAPPRIS P1 BASIC19.23■□□□□ 0.67
VPS29Q9UBQ0 FUZ-212ENST00000528094 1479 ntTSL 2 BASIC19.23■□□□□ 0.67
VPS29Q9UBQ0 MAML1-201ENST00000292599 5723 ntAPPRIS P1 TSL 1 (best) BASIC19.23■□□□□ 0.67
VPS29Q9UBQ0 LBX2-AS1-202ENST00000603175 2083 ntBASIC19.23■□□□□ 0.67
VPS29Q9UBQ0 FGF17-202ENST00000518533 1706 ntTSL 1 (best) BASIC19.23■□□□□ 0.67
VPS29Q9UBQ0 GDF15-201ENST00000252809 1200 ntAPPRIS P1 TSL 1 (best) BASIC19.23■□□□□ 0.67
VPS29Q9UBQ0 CFD-201ENST00000327726 1201 ntAPPRIS P3 TSL 1 (best) BASIC19.23■□□□□ 0.67
VPS29Q9UBQ0 MOB2-201ENST00000329957 1207 ntAPPRIS P1 TSL 2 BASIC19.23■□□□□ 0.67
VPS29Q9UBQ0 TMEM230-210ENST00000612323 1231 ntTSL 1 (best) BASIC19.23■□□□□ 0.67
VPS29Q9UBQ0 WISP2-202ENST00000372865 1518 ntTSL 1 (best) BASIC19.23■□□□□ 0.67
VPS29Q9UBQ0 SLC35A3-205ENST00000465289 5696 ntAPPRIS P1 TSL 5 BASIC19.23■□□□□ 0.67
VPS29Q9UBQ0 KMT5B-201ENST00000304363 5837 ntAPPRIS P1 TSL 5 BASIC19.23■□□□□ 0.67
VPS29Q9UBQ0 KLF2-201ENST00000248071 2018 ntAPPRIS P1 TSL 1 (best) BASIC19.23■□□□□ 0.67
VPS29Q9UBQ0 ST6GALNAC6-215ENST00000542456 2018 ntTSL 2 BASIC19.23■□□□□ 0.67
VPS29Q9UBQ0 DOK2-201ENST00000276420 1936 ntAPPRIS P1 TSL 1 (best) BASIC19.23■□□□□ 0.67
VPS29Q9UBQ0 MBD1-216ENST00000587605 1945 ntTSL 2 BASIC19.23■□□□□ 0.67
VPS29Q9UBQ0 MARC2-201ENST00000359316 1335 ntTSL 1 (best) BASIC19.23■□□□□ 0.67
VPS29Q9UBQ0 CSPG5-201ENST00000264723 4080 ntAPPRIS P3 TSL 1 (best) BASIC19.22■□□□□ 0.67
VPS29Q9UBQ0 NRXN1-226ENST00000626899 2543 ntTSL 2 BASIC19.22■□□□□ 0.67
VPS29Q9UBQ0 PTBP1P-201ENST00000554374 1601 ntBASIC19.22■□□□□ 0.67
VPS29Q9UBQ0 TOR2A-201ENST00000336067 1370 ntTSL 2 BASIC19.22■□□□□ 0.67
VPS29Q9UBQ0 ACAT1-201ENST00000265838 1761 ntAPPRIS P1 TSL 1 (best) BASIC19.22■□□□□ 0.67
VPS29Q9UBQ0 VGF-201ENST00000249330 2575 ntAPPRIS P1 TSL 1 (best) BASIC19.22■□□□□ 0.67
VPS29Q9UBQ0 CORO1B-202ENST00000393893 1931 ntAPPRIS P1 TSL 5 BASIC19.22■□□□□ 0.67
VPS29Q9UBQ0 TPCN2-208ENST00000637342 2856 ntTSL 5 BASIC19.22■□□□□ 0.67
VPS29Q9UBQ0 PLAC9-202ENST00000372267 472 ntAPPRIS ALT2 TSL 3 BASIC19.22■□□□□ 0.67
VPS29Q9UBQ0 HTT-AS-201ENST00000503893 515 ntTSL 4 BASIC19.22■□□□□ 0.67
VPS29Q9UBQ0 LOXL1-AS1-208ENST00000565756 885 ntTSL 2 BASIC19.22■□□□□ 0.67
VPS29Q9UBQ0 PTGIR-205ENST00000597185 775 ntTSL 3 BASIC19.22■□□□□ 0.67
VPS29Q9UBQ0 JOSD2-205ENST00000601423 802 ntAPPRIS P1 TSL 1 (best) BASIC19.22■□□□□ 0.67
VPS29Q9UBQ0 TRIM2-212ENST00000632856 656 ntTSL 3 BASIC19.22■□□□□ 0.67
VPS29Q9UBQ0 KCNQ5-207ENST00000403813 6539 ntAPPRIS ALT2 TSL 5 BASIC19.22■□□□□ 0.67
VPS29Q9UBQ0 RAI14-201ENST00000265109 5092 ntAPPRIS P1 TSL 1 (best) BASIC19.22■□□□□ 0.67
VPS29Q9UBQ0 AC010980.2-201ENST00000587099 1412 ntBASIC19.22■□□□□ 0.67
VPS29Q9UBQ0 DALRD3-201ENST00000313778 1968 ntTSL 2 BASIC19.22■□□□□ 0.67
VPS29Q9UBQ0 SPOCK3-215ENST00000510741 1963 ntAPPRIS ALT2 TSL 5 BASIC19.22■□□□□ 0.67
VPS29Q9UBQ0 WNT7B-202ENST00000409496 2285 ntAPPRIS ALT1 TSL 2 BASIC19.22■□□□□ 0.67
VPS29Q9UBQ0 SUSD1-202ENST00000374263 2973 ntAPPRIS ALT2 TSL 2 BASIC19.22■□□□□ 0.67
VPS29Q9UBQ0 COL15A1-201ENST00000375001 5496 ntAPPRIS P2 TSL 1 (best) BASIC19.22■□□□□ 0.67
VPS29Q9UBQ0 GATA5-201ENST00000252997 2595 ntAPPRIS P1 TSL 1 (best) BASIC19.22■□□□□ 0.67
VPS29Q9UBQ0 MMP23B-202ENST00000378675 1309 ntTSL 1 (best) BASIC19.22■□□□□ 0.67
VPS29Q9UBQ0 SYT7-206ENST00000540677 2013 ntTSL 1 (best) BASIC19.22■□□□□ 0.67
VPS29Q9UBQ0 NPDC1-202ENST00000371601 1494 ntAPPRIS P2 TSL 1 (best) BASIC19.22■□□□□ 0.67
VPS29Q9UBQ0 TSNAXIP1-202ENST00000415766 2338 ntAPPRIS ALT2 TSL 2 BASIC19.22■□□□□ 0.67
VPS29Q9UBQ0 EIF2B1-204ENST00000537073 1768 ntTSL 2 BASIC19.21■□□□□ 0.67
VPS29Q9UBQ0 AGTR1-209ENST00000497524 2359 ntAPPRIS P1 TSL 1 (best) BASIC19.21■□□□□ 0.67
VPS29Q9UBQ0 GRTP1-203ENST00000375431 1384 ntAPPRIS P3 TSL 1 (best) BASIC19.21■□□□□ 0.67
VPS29Q9UBQ0 ORAI3-204ENST00000566237 1393 ntTSL 5 BASIC19.21■□□□□ 0.67
VPS29Q9UBQ0 DMPK-203ENST00000354227 1982 ntTSL 2 BASIC19.21■□□□□ 0.67
VPS29Q9UBQ0 SP9-201ENST00000394967 2554 ntAPPRIS P1 TSL 5 BASIC19.21■□□□□ 0.67
VPS29Q9UBQ0 SETD6-201ENST00000219315 1553 ntAPPRIS ALT2 TSL 1 (best) BASIC19.21■□□□□ 0.67
VPS29Q9UBQ0 OIP5-201ENST00000220514 1236 ntAPPRIS P1 TSL 1 (best) BASIC19.21■□□□□ 0.67
VPS29Q9UBQ0 GRTP1-201ENST00000326039 1294 ntTSL 1 (best) BASIC19.21■□□□□ 0.67
VPS29Q9UBQ0 PHLDA3-202ENST00000367311 2640 ntAPPRIS P1 TSL 1 (best) BASIC19.21■□□□□ 0.67
VPS29Q9UBQ0 AC004911.1-201ENST00000416316 871 ntBASIC19.21■□□□□ 0.67
VPS29Q9UBQ0 AL512625.2-201ENST00000417533 625 ntBASIC19.21■□□□□ 0.67
VPS29Q9UBQ0 BTBD9-205ENST00000419706 2034 ntTSL 1 (best) BASIC19.21■□□□□ 0.67
VPS29Q9UBQ0 AL355472.2-201ENST00000422958 438 ntBASIC19.21■□□□□ 0.67
VPS29Q9UBQ0 DALRD3-205ENST00000440857 2014 ntTSL 1 (best) BASIC19.21■□□□□ 0.67
VPS29Q9UBQ0 YIF1A-205ENST00000471387 854 ntTSL 5 BASIC19.21■□□□□ 0.67
VPS29Q9UBQ0 GLT8D1-213ENST00000491606 1577 ntAPPRIS P1 TSL 5 BASIC19.21■□□□□ 0.67
VPS29Q9UBQ0 AC005181.1-201ENST00000604782 1256 ntBASIC19.21■□□□□ 0.67
VPS29Q9UBQ0 ACYP2-207ENST00000606082 713 ntTSL 5 BASIC19.21■□□□□ 0.67
VPS29Q9UBQ0 KMT2B-201ENST00000420124 8469 ntAPPRIS P1 TSL 1 (best) BASIC19.21■□□□□ 0.67
VPS29Q9UBQ0 DPH1-201ENST00000263083 2221 ntAPPRIS P2 TSL 1 (best) BASIC19.21■□□□□ 0.67
VPS29Q9UBQ0 CPLX3-201ENST00000395018 2082 ntAPPRIS P1 TSL 1 (best) BASIC19.21■□□□□ 0.67
VPS29Q9UBQ0 AGAP1-205ENST00000409538 6138 ntTSL 5 BASIC19.21■□□□□ 0.67
VPS29Q9UBQ0 ALKBH7-201ENST00000245812 1332 ntAPPRIS P1 TSL 1 (best) BASIC19.21■□□□□ 0.67
VPS29Q9UBQ0 EHBP1-209ENST00000431489 5076 ntAPPRIS ALT2 TSL 1 (best) BASIC19.21■□□□□ 0.67
VPS29Q9UBQ0 TBL1Y-201ENST00000346432 2312 ntAPPRIS P1 TSL 1 (best) BASIC19.2■□□□□ 0.66
VPS29Q9UBQ0 PQLC2-203ENST00000400548 1548 ntTSL 1 (best) BASIC19.2■□□□□ 0.66
VPS29Q9UBQ0 PDLIM5-205ENST00000380180 2020 ntTSL 1 (best) BASIC19.2■□□□□ 0.66
VPS29Q9UBQ0 C17orf62-204ENST00000437807 2242 ntAPPRIS P1 TSL 2 BASIC19.2■□□□□ 0.66
VPS29Q9UBQ0 WT1-212ENST00000640146 1554 ntAPPRIS P3 TSL 1 (best) BASIC19.2■□□□□ 0.66
VPS29Q9UBQ0 LEFTY2-202ENST00000420304 2085 ntTSL 2 BASIC19.2■□□□□ 0.66
VPS29Q9UBQ0 BCKDK-202ENST00000287507 1907 ntTSL 1 (best) BASIC19.2■□□□□ 0.66
Retrieved 100 of 98,524 protein–RNA pairs in 24 ms