Protein–RNA interactions for Protein: Q9HC56

PCDH9, Protocadherin-9, humanhuman

Predictions only

Length 1,237 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PCDH9Q9HC56 CROCCP5-201ENST00000436658 830 ntBASIC20.73■□□□□ 0.91
PCDH9Q9HC56 RARRES2P4-201ENST00000514074 484 ntBASIC20.73■□□□□ 0.91
PCDH9Q9HC56 MFSD14C-203ENST00000602917 786 ntAPPRIS P5 TSL 1 (best) BASIC20.73■□□□□ 0.91
PCDH9Q9HC56 MYO19-221ENST00000620640 1186 ntTSL 2 BASIC20.73■□□□□ 0.91
PCDH9Q9HC56 AC008694.1-202ENST00000636953 945 ntBASIC20.73■□□□□ 0.91
PCDH9Q9HC56 UBXN2B-206ENST00000638450 591 ntTSL 5 BASIC20.73■□□□□ 0.91
PCDH9Q9HC56 HSPD1-202ENST00000388968 2455 ntAPPRIS P1 TSL 1 (best) BASIC20.73■□□□□ 0.91
PCDH9Q9HC56 UXS1-203ENST00000409501 1839 ntAPPRIS P3 TSL 1 (best) BASIC20.73■□□□□ 0.91
PCDH9Q9HC56 HYLS1-203ENST00000526028 1803 ntAPPRIS P1 TSL 5 BASIC20.73■□□□□ 0.91
PCDH9Q9HC56 KLF2-201ENST00000248071 2018 ntAPPRIS P1 TSL 1 (best) BASIC20.73■□□□□ 0.91
PCDH9Q9HC56 MTFR1L-203ENST00000374303 2004 ntAPPRIS P1 TSL 1 (best) BASIC20.73■□□□□ 0.91
PCDH9Q9HC56 MREG-201ENST00000263268 1314 ntAPPRIS P1 TSL 2 BASIC20.73■□□□□ 0.91
PCDH9Q9HC56 NR2F2-201ENST00000394166 5275 ntAPPRIS P1 TSL 1 (best) BASIC20.73■□□□□ 0.91
PCDH9Q9HC56 ASCL4-201ENST00000342331 2260 ntAPPRIS P1 BASIC20.73■□□□□ 0.91
PCDH9Q9HC56 C3orf18-203ENST00000426034 2486 ntAPPRIS P1 TSL 1 (best) BASIC20.72■□□□□ 0.91
PCDH9Q9HC56 ZNF331-214ENST00000511154 2120 ntAPPRIS P1 TSL 1 (best) BASIC20.72■□□□□ 0.91
PCDH9Q9HC56 TGIF1-207ENST00000407501 1585 ntAPPRIS P1 TSL 3 BASIC20.72■□□□□ 0.91
PCDH9Q9HC56 SNX24-211ENST00000513881 1563 ntTSL 1 (best) BASIC20.72■□□□□ 0.91
PCDH9Q9HC56 C19orf25-202ENST00000436106 2403 ntAPPRIS P1 TSL 1 (best) BASIC20.72■□□□□ 0.91
PCDH9Q9HC56 ATP9A-202ENST00000338821 8106 ntAPPRIS P1 TSL 1 (best) BASIC20.72■□□□□ 0.91
PCDH9Q9HC56 ASIP-201ENST00000374954 586 ntAPPRIS P1 TSL 1 (best) BASIC20.72■□□□□ 0.91
PCDH9Q9HC56 EIF5A-205ENST00000419711 1271 ntAPPRIS P1 TSL 1 (best) BASIC20.72■□□□□ 0.91
PCDH9Q9HC56 AL645608.9-201ENST00000442292 829 ntTSL 1 (best) BASIC20.72■□□□□ 0.91
PCDH9Q9HC56 GPR78-201ENST00000382487 1694 ntAPPRIS P1 TSL 1 (best) BASIC20.72■□□□□ 0.91
PCDH9Q9HC56 DVL1-204ENST00000610709 2268 ntTSL 2 BASIC20.72■□□□□ 0.91
PCDH9Q9HC56 FBXO27-201ENST00000292853 2330 ntAPPRIS P2 TSL 1 (best) BASIC20.72■□□□□ 0.91
PCDH9Q9HC56 CYB561-213ENST00000581573 2344 ntAPPRIS P1 TSL 1 (best) BASIC20.72■□□□□ 0.91
PCDH9Q9HC56 IGFALS-201ENST00000215539 2116 ntAPPRIS P1 TSL 1 (best) BASIC20.72■□□□□ 0.91
PCDH9Q9HC56 ODC1-202ENST00000405333 1943 ntAPPRIS P1 TSL 2 BASIC20.72■□□□□ 0.91
PCDH9Q9HC56 DUSP18-205ENST00000404885 1306 ntAPPRIS P1 TSL 1 (best) BASIC20.72■□□□□ 0.91
PCDH9Q9HC56 NFE2L1-204ENST00000536222 2172 ntTSL 2 BASIC20.72■□□□□ 0.91
PCDH9Q9HC56 NBL1-209ENST00000548815 1953 ntAPPRIS P3 TSL 3 BASIC20.72■□□□□ 0.91
PCDH9Q9HC56 H19-201ENST00000411754 1788 ntTSL 5 BASIC20.72■□□□□ 0.91
PCDH9Q9HC56 UBE2L6-202ENST00000340573 1573 ntTSL 1 (best) BASIC20.72■□□□□ 0.91
PCDH9Q9HC56 SUGCT-202ENST00000401647 1369 ntTSL 1 (best) BASIC20.72■□□□□ 0.91
PCDH9Q9HC56 SAC3D1-205ENST00000531072 1362 ntAPPRIS P1 TSL 2 BASIC20.72■□□□□ 0.91
PCDH9Q9HC56 C2orf54-201ENST00000307486 2017 ntAPPRIS ALT2 TSL 1 (best) BASIC20.71■□□□□ 0.91
PCDH9Q9HC56 WASH6P-203ENST00000460206 1826 ntTSL 5 BASIC20.71■□□□□ 0.91
PCDH9Q9HC56 KLC1-219ENST00000555836 2467 ntTSL 5 BASIC20.71■□□□□ 0.91
PCDH9Q9HC56 RNF135-205ENST00000535306 2098 ntTSL 1 (best) BASIC20.71■□□□□ 0.91
PCDH9Q9HC56 SPNS2-201ENST00000329078 3447 ntAPPRIS P1 TSL 1 (best) BASIC20.71■□□□□ 0.91
PCDH9Q9HC56 TUSC2-201ENST00000232496 1691 ntAPPRIS P1 TSL 1 (best) BASIC20.71■□□□□ 0.91
PCDH9Q9HC56 DOK2-201ENST00000276420 1936 ntAPPRIS P1 TSL 1 (best) BASIC20.71■□□□□ 0.91
PCDH9Q9HC56 PCBP3-203ENST00000400308 1911 ntTSL 1 (best) BASIC20.71■□□□□ 0.91
PCDH9Q9HC56 TAF9-201ENST00000217893 1283 ntAPPRIS P2 TSL 1 (best) BASIC20.71■□□□□ 0.91
PCDH9Q9HC56 PET117-201ENST00000432901 1141 ntAPPRIS P1 TSL 1 (best) BASIC20.71■□□□□ 0.91
PCDH9Q9HC56 Z97986.1-201ENST00000565879 476 ntTSL 5 BASIC20.71■□□□□ 0.91
PCDH9Q9HC56 AL050303.2-201ENST00000619798 666 ntBASIC20.71■□□□□ 0.91
PCDH9Q9HC56 CIRBP-246ENST00000628979 1043 ntTSL 2 BASIC20.71■□□□□ 0.91
PCDH9Q9HC56 ADAMTS10-205ENST00000595838 2458 ntTSL 2 BASIC20.71■□□□□ 0.91
PCDH9Q9HC56 POLE2-202ENST00000539565 1792 ntTSL 1 (best) BASIC20.71■□□□□ 0.91
PCDH9Q9HC56 FICD-201ENST00000361549 1816 ntTSL 1 (best) BASIC20.71■□□□□ 0.91
PCDH9Q9HC56 SYNC-201ENST00000373484 1824 ntAPPRIS ALT2 TSL 2 BASIC20.71■□□□□ 0.91
PCDH9Q9HC56 PITX2-201ENST00000306732 2320 ntAPPRIS P4 TSL 1 (best) BASIC20.71■□□□□ 0.91
PCDH9Q9HC56 UTP4-201ENST00000314423 2322 ntAPPRIS P1 TSL 1 (best) BASIC20.71■□□□□ 0.91
PCDH9Q9HC56 DMRT2-205ENST00000382255 2367 ntTSL 1 (best) BASIC20.71■□□□□ 0.91
PCDH9Q9HC56 ARNTL2-204ENST00000395901 1954 ntAPPRIS ALT2 TSL 1 (best) BASIC20.7■□□□□ 0.9
PCDH9Q9HC56 DPYSL5-202ENST00000401478 1972 ntAPPRIS P1 TSL 1 (best) BASIC20.7■□□□□ 0.9
PCDH9Q9HC56 CAPN12-201ENST00000328867 2762 ntAPPRIS P1 TSL 1 (best) BASIC20.7■□□□□ 0.9
PCDH9Q9HC56 NEU4-205ENST00000407683 2273 ntAPPRIS P1 TSL 2 BASIC20.7■□□□□ 0.9
PCDH9Q9HC56 VIL1-204ENST00000440053 1454 ntTSL 1 (best) BASIC20.7■□□□□ 0.9
PCDH9Q9HC56 AC008687.4-201ENST00000637680 1485 ntAPPRIS P1 TSL 5 BASIC20.7■□□□□ 0.9
PCDH9Q9HC56 ASMTL-206ENST00000534940 2048 ntTSL 2 BASIC20.7■□□□□ 0.9
PCDH9Q9HC56 AL691432.2-201ENST00000607222 2038 ntBASIC20.7■□□□□ 0.9
PCDH9Q9HC56 SCRN2-201ENST00000290216 1548 ntAPPRIS P1 TSL 1 (best) BASIC20.7■□□□□ 0.9
PCDH9Q9HC56 OIP5-201ENST00000220514 1236 ntAPPRIS P1 TSL 1 (best) BASIC20.7■□□□□ 0.9
PCDH9Q9HC56 TMCO3-201ENST00000375391 2132 ntTSL 1 (best) BASIC20.7■□□□□ 0.9
PCDH9Q9HC56 MSLN-201ENST00000382862 2116 ntAPPRIS P3 TSL 5 BASIC20.7■□□□□ 0.9
PCDH9Q9HC56 PGM5P4-201ENST00000421970 445 ntBASIC20.7■□□□□ 0.9
PCDH9Q9HC56 AC006970.2-201ENST00000450065 779 ntBASIC20.7■□□□□ 0.9
PCDH9Q9HC56 AC025754.1-201ENST00000507566 407 ntTSL 3 BASIC20.7■□□□□ 0.9
PCDH9Q9HC56 AP001972.3-201ENST00000530792 495 ntTSL 3 BASIC20.7■□□□□ 0.9
PCDH9Q9HC56 TMEM41B-205ENST00000533723 723 ntTSL 2 BASIC20.7■□□□□ 0.9
PCDH9Q9HC56 IL34-204ENST00000566361 1001 ntAPPRIS ALT2 TSL 1 (best) BASIC20.7■□□□□ 0.9
PCDH9Q9HC56 OR10C1-204ENST00000622521 1039 ntBASIC20.7■□□□□ 0.9
PCDH9Q9HC56 GLG1-214ENST00000627032 2147 ntTSL 5 BASIC20.7■□□□□ 0.9
PCDH9Q9HC56 MADCAM1-201ENST00000215637 1572 ntAPPRIS P4 TSL 1 (best) BASIC20.7■□□□□ 0.9
PCDH9Q9HC56 UCHL5-204ENST00000367451 1346 ntTSL 5 BASIC20.7■□□□□ 0.9
PCDH9Q9HC56 WNT7B-204ENST00000410089 2202 ntTSL 5 BASIC20.7■□□□□ 0.9
PCDH9Q9HC56 EOMES-202ENST00000449599 2829 ntTSL 1 (best) BASIC20.7■□□□□ 0.9
PCDH9Q9HC56 ANTXR1-202ENST00000409349 1384 ntTSL 1 (best) BASIC20.7■□□□□ 0.9
PCDH9Q9HC56 LIMS2-207ENST00000409808 2315 ntAPPRIS ALT1 TSL 5 BASIC20.7■□□□□ 0.9
PCDH9Q9HC56 NKX2-1-202ENST00000498187 2338 ntAPPRIS P1 TSL 1 (best) BASIC20.7■□□□□ 0.9
PCDH9Q9HC56 AC087633.2-202ENST00000565166 1439 ntBASIC20.7■□□□□ 0.9
PCDH9Q9HC56 CPLX3-201ENST00000395018 2082 ntAPPRIS P1 TSL 1 (best) BASIC20.69■□□□□ 0.9
PCDH9Q9HC56 TOR1B-201ENST00000259339 2769 ntAPPRIS P1 TSL 1 (best) BASIC20.69■□□□□ 0.9
PCDH9Q9HC56 TUBA4A-202ENST00000392088 2499 ntTSL 2 BASIC20.69■□□□□ 0.9
PCDH9Q9HC56 TINAGL1-211ENST00000537531 1841 ntAPPRIS ALT2 TSL 5 BASIC20.69■□□□□ 0.9
PCDH9Q9HC56 MAP3K21-203ENST00000366624 5809 ntAPPRIS P2 TSL 1 (best) BASIC20.69■□□□□ 0.9
PCDH9Q9HC56 SMIM10L2A-201ENST00000417443 5230 ntAPPRIS P1 TSL 1 (best) BASIC20.69■□□□□ 0.9
PCDH9Q9HC56 C16orf70-201ENST00000219139 2865 ntAPPRIS P1 TSL 1 (best) BASIC20.69■□□□□ 0.9
PCDH9Q9HC56 ZNF579-201ENST00000325421 2899 ntAPPRIS P1 TSL 2 BASIC20.69■□□□□ 0.9
PCDH9Q9HC56 NSMF-203ENST00000371472 1852 ntAPPRIS P3 TSL 2 BASIC20.69■□□□□ 0.9
PCDH9Q9HC56 RTKN-201ENST00000233330 2220 ntTSL 1 (best) BASIC20.69■□□□□ 0.9
PCDH9Q9HC56 CCDC62-204ENST00000392441 2936 ntAPPRIS ALT2 TSL 5 BASIC20.69■□□□□ 0.9
PCDH9Q9HC56 PYCR1-216ENST00000619204 1904 ntAPPRIS P1 TSL 1 (best) BASIC20.69■□□□□ 0.9
PCDH9Q9HC56 NECAB3-201ENST00000246190 1989 ntTSL 5 BASIC20.69■□□□□ 0.9
PCDH9Q9HC56 MFSD10-206ENST00000508221 1639 ntTSL 5 BASIC20.69■□□□□ 0.9
PCDH9Q9HC56 MAEA-213ENST00000510794 1607 ntTSL 2 BASIC20.69■□□□□ 0.9
PCDH9Q9HC56 TMEM179-206ENST00000616017 1645 ntBASIC20.69■□□□□ 0.9
Retrieved 100 of 98,524 protein–RNA pairs in 30.8 ms