Protein–RNA interactions for Protein: Q9BWH6

RPAP1, RNA polymerase II-associated protein 1, humanhuman

Predicted RBP Predictions only

Length 1,393 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
RPAP1Q9BWH6 SLC25A10-201ENST00000331531 1946 ntTSL 1 (best) BASIC24.43■■□□□ 1.5
RPAP1Q9BWH6 ST8SIA1-204ENST00000404299 1920 ntTSL 1 (best) BASIC24.43■■□□□ 1.5
RPAP1Q9BWH6 SPATA25-201ENST00000372519 757 ntAPPRIS P1 TSL 1 (best) BASIC24.42■■□□□ 1.5
RPAP1Q9BWH6 GLYCTK-205ENST00000473032 935 ntTSL 1 (best) BASIC24.42■■□□□ 1.5
RPAP1Q9BWH6 TGIF1-219ENST00000551541 990 ntTSL 2 BASIC24.42■■□□□ 1.5
RPAP1Q9BWH6 UBALD1-209ENST00000591897 1275 ntTSL 2 BASIC24.42■■□□□ 1.5
RPAP1Q9BWH6 AL024498.1-202ENST00000606652 480 ntTSL 2 BASIC24.42■■□□□ 1.5
RPAP1Q9BWH6 MIR2861-201ENST00000636310 90 ntBASIC24.42■■□□□ 1.5
RPAP1Q9BWH6 AC013268.1-201ENST00000639717 1208 ntTSL 5 BASIC24.42■■□□□ 1.5
RPAP1Q9BWH6 FBXL15-202ENST00000369956 2344 ntAPPRIS ALT1 TSL 1 (best) BASIC24.42■■□□□ 1.5
RPAP1Q9BWH6 TACO1-201ENST00000258975 1469 ntAPPRIS P1 TSL 1 (best) BASIC24.42■■□□□ 1.5
RPAP1Q9BWH6 CHRNA3-202ENST00000348639 2030 ntTSL 1 (best) BASIC24.42■■□□□ 1.5
RPAP1Q9BWH6 TPCN2-205ENST00000542467 2000 ntTSL 2 BASIC24.42■■□□□ 1.5
RPAP1Q9BWH6 RHNO1-204ENST00000489288 1870 ntAPPRIS P3 TSL 1 (best) BASIC24.42■■□□□ 1.5
RPAP1Q9BWH6 WT1-211ENST00000639907 1545 ntAPPRIS ALT2 TSL 2 BASIC24.42■■□□□ 1.5
RPAP1Q9BWH6 JAKMIP1-203ENST00000409371 2420 ntTSL 1 (best) BASIC24.42■■□□□ 1.5
RPAP1Q9BWH6 SHKBP1-225ENST00000600733 2284 ntTSL 5 BASIC24.42■■□□□ 1.5
RPAP1Q9BWH6 NTRK3-206ENST00000540489 2145 ntTSL 5 BASIC24.42■■□□□ 1.5
RPAP1Q9BWH6 LMTK3-201ENST00000270238 4972 ntAPPRIS P2 TSL 1 (best) BASIC24.42■■□□□ 1.5
RPAP1Q9BWH6 NUDT11-201ENST00000375992 2385 ntAPPRIS P1 TSL 1 (best) BASIC24.42■■□□□ 1.5
RPAP1Q9BWH6 CXCL3-201ENST00000296026 1075 ntAPPRIS P1 TSL 1 (best) BASIC24.42■■□□□ 1.5
RPAP1Q9BWH6 CAVIN3-201ENST00000303927 1174 ntAPPRIS P1 TSL 1 (best) BASIC24.42■■□□□ 1.5
RPAP1Q9BWH6 NKAIN4-201ENST00000370307 793 ntTSL 5 BASIC24.42■■□□□ 1.5
RPAP1Q9BWH6 LTB-210ENST00000429299 897 ntAPPRIS P1 TSL 1 (best) BASIC24.42■■□□□ 1.5
RPAP1Q9BWH6 SPINK2-202ENST00000504762 659 ntAPPRIS ALT2 TSL 2 BASIC24.42■■□□□ 1.5
RPAP1Q9BWH6 AL354712.1-201ENST00000563570 477 ntTSL 3 BASIC24.42■■□□□ 1.5
RPAP1Q9BWH6 AC009090.2-201ENST00000565829 472 ntTSL 3 BASIC24.42■■□□□ 1.5
RPAP1Q9BWH6 MAZ-215ENST00000569978 567 ntTSL 1 (best) BASIC24.42■■□□□ 1.5
RPAP1Q9BWH6 MIR4497-201ENST00000583208 89 ntBASIC24.42■■□□□ 1.5
RPAP1Q9BWH6 ANAPC11-223ENST00000612413 964 ntTSL 3 BASIC24.42■■□□□ 1.5
RPAP1Q9BWH6 FP700111.2-201ENST00000619190 1892 ntBASIC24.41■■□□□ 1.5
RPAP1Q9BWH6 TERF2IP-201ENST00000300086 2118 ntAPPRIS P1 TSL 1 (best) BASIC24.41■■□□□ 1.5
RPAP1Q9BWH6 EHBP1L1-201ENST00000309295 5185 ntAPPRIS P1 TSL 1 (best) BASIC24.41■■□□□ 1.5
RPAP1Q9BWH6 DDX31-206ENST00000480876 1333 ntTSL 1 (best) BASIC24.41■■□□□ 1.5
RPAP1Q9BWH6 ARRB2-216ENST00000574954 1348 ntTSL 1 (best) BASIC24.41■■□□□ 1.5
RPAP1Q9BWH6 PLEKHA8-203ENST00000396259 2840 ntTSL 2 BASIC24.41■■□□□ 1.5
RPAP1Q9BWH6 SERPINB6-204ENST00000380529 1370 ntAPPRIS P1 TSL 2 BASIC24.41■■□□□ 1.5
RPAP1Q9BWH6 FAM167A-207ENST00000534308 1642 ntAPPRIS P1 TSL 1 (best) BASIC24.41■■□□□ 1.5
RPAP1Q9BWH6 MTMR9LP-202ENST00000423995 1878 ntTSL 2 BASIC24.41■■□□□ 1.5
RPAP1Q9BWH6 AL121603.2-201ENST00000557373 2117 ntBASIC24.41■■□□□ 1.5
RPAP1Q9BWH6 FXYD3-203ENST00000435734 1467 ntTSL 1 (best) BASIC24.41■■□□□ 1.5
RPAP1Q9BWH6 CYP1B1-207ENST00000614273 2174 ntAPPRIS P1 TSL 5 BASIC24.41■■□□□ 1.5
RPAP1Q9BWH6 EFHD2-201ENST00000375980 2419 ntAPPRIS P1 TSL 1 (best) BASIC24.41■■□□□ 1.5
RPAP1Q9BWH6 ELF3-AS1-202ENST00000419190 788 ntTSL 2 BASIC24.41■■□□□ 1.5
RPAP1Q9BWH6 NDUFS6-202ENST00000469176 550 ntTSL 2 BASIC24.41■■□□□ 1.5
RPAP1Q9BWH6 DEUP1-206ENST00000530273 410 ntTSL 3 BASIC24.41■■□□□ 1.5
RPAP1Q9BWH6 COX4I1-202ENST00000561569 716 ntAPPRIS P1 TSL 2 BASIC24.41■■□□□ 1.5
RPAP1Q9BWH6 FBXL12-203ENST00000586073 582 ntTSL 2 BASIC24.41■■□□□ 1.5
RPAP1Q9BWH6 AL356652.1-201ENST00000615962 565 ntBASIC24.41■■□□□ 1.5
RPAP1Q9BWH6 CHST1-201ENST00000308064 2718 ntAPPRIS P1 TSL 1 (best) BASIC24.4■■□□□ 1.5
RPAP1Q9BWH6 AL158151.1-201ENST00000372490 2047 ntTSL 2 BASIC24.4■■□□□ 1.5
RPAP1Q9BWH6 HOXB2-201ENST00000330070 1562 ntAPPRIS P1 TSL 1 (best) BASIC24.4■■□□□ 1.5
RPAP1Q9BWH6 TRABD-204ENST00000395829 1628 ntAPPRIS ALT2 TSL 5 BASIC24.4■■□□□ 1.5
RPAP1Q9BWH6 ADM-206ENST00000528655 1889 ntAPPRIS P1 TSL 1 (best) BASIC24.4■■□□□ 1.5
RPAP1Q9BWH6 FAM193A-211ENST00000637812 4885 ntAPPRIS ALT2 TSL 5 BASIC24.4■■□□□ 1.5
RPAP1Q9BWH6 C7orf26-201ENST00000344417 2182 ntAPPRIS P1 TSL 2 BASIC24.4■■□□□ 1.5
RPAP1Q9BWH6 B4GALT2-204ENST00000434555 1923 ntTSL 1 (best) BASIC24.4■■□□□ 1.5
RPAP1Q9BWH6 NFS1-214ENST00000541387 1436 ntTSL 2 BASIC24.4■■□□□ 1.5
RPAP1Q9BWH6 C22orf39-206ENST00000611555 1977 ntTSL 1 (best) BASIC24.4■■□□□ 1.5
RPAP1Q9BWH6 KCNE5-201ENST00000372101 1473 ntAPPRIS P1 BASIC24.4■■□□□ 1.5
RPAP1Q9BWH6 MTFP1-202ENST00000355143 891 ntTSL 2 BASIC24.4■■□□□ 1.5
RPAP1Q9BWH6 AL357874.1-201ENST00000428948 574 ntTSL 1 (best) BASIC24.4■■□□□ 1.5
RPAP1Q9BWH6 SMG1P1-207ENST00000446662 852 ntTSL 5 BASIC24.4■■□□□ 1.5
RPAP1Q9BWH6 GRAMD1B-209ENST00000533341 707 ntTSL 2 BASIC24.4■■□□□ 1.5
RPAP1Q9BWH6 C2orf69P4-201ENST00000565394 541 ntBASIC24.4■■□□□ 1.5
RPAP1Q9BWH6 EGFR-204ENST00000420316 1570 ntTSL 1 (best) BASIC24.4■■□□□ 1.5
RPAP1Q9BWH6 INPP1-202ENST00000392329 2162 ntAPPRIS P1 TSL 5 BASIC24.4■■□□□ 1.5
RPAP1Q9BWH6 BZW1-202ENST00000409226 2455 ntTSL 2 BASIC24.4■■□□□ 1.5
RPAP1Q9BWH6 SLC1A7-201ENST00000371491 1306 ntTSL 1 (best) BASIC24.4■■□□□ 1.5
RPAP1Q9BWH6 GRINA-201ENST00000313269 1968 ntAPPRIS P1 TSL 5 BASIC24.39■■□□□ 1.5
RPAP1Q9BWH6 SYT7-209ENST00000542836 1362 ntTSL 5 BASIC24.39■■□□□ 1.5
RPAP1Q9BWH6 FLT1-204ENST00000541932 2969 ntTSL 1 (best) BASIC24.39■■□□□ 1.5
RPAP1Q9BWH6 PIGH-201ENST00000216452 1420 ntAPPRIS P2 TSL 1 (best) BASIC24.39■■□□□ 1.5
RPAP1Q9BWH6 CRHR1-214ENST00000619154 2370 ntTSL 1 (best) BASIC24.39■■□□□ 1.5
RPAP1Q9BWH6 MLST8-202ENST00000382450 1861 ntAPPRIS ALT1 TSL 2 BASIC24.39■■□□□ 1.49
RPAP1Q9BWH6 MLST8-215ENST00000564088 1861 ntAPPRIS P3 TSL 2 BASIC24.39■■□□□ 1.49
RPAP1Q9BWH6 METTL27-201ENST00000297873 941 ntAPPRIS P1 TSL 1 (best) BASIC24.39■■□□□ 1.49
RPAP1Q9BWH6 CMTM7-202ENST00000349718 1214 ntTSL 1 (best) BASIC24.39■■□□□ 1.49
RPAP1Q9BWH6 IFI6-202ENST00000361157 841 ntAPPRIS ALT2 TSL 1 (best) BASIC24.39■■□□□ 1.49
RPAP1Q9BWH6 RHOG-202ENST00000396978 1066 ntAPPRIS P1 TSL 3 BASIC24.39■■□□□ 1.49
RPAP1Q9BWH6 NAT14-204ENST00000591590 1011 ntTSL 1 (best) BASIC24.39■■□□□ 1.49
RPAP1Q9BWH6 SEC11A-201ENST00000268220 1656 ntAPPRIS P1 TSL 1 (best) BASIC24.39■■□□□ 1.49
RPAP1Q9BWH6 ATG4B-204ENST00000402096 1685 ntTSL 2 BASIC24.39■■□□□ 1.49
RPAP1Q9BWH6 FSTL3-201ENST00000166139 2542 ntAPPRIS P1 TSL 1 (best) BASIC24.39■■□□□ 1.49
RPAP1Q9BWH6 BRD9-202ENST00000467963 2156 ntAPPRIS P1 TSL 2 BASIC24.38■■□□□ 1.49
RPAP1Q9BWH6 ARFRP1-210ENST00000614942 2554 ntTSL 5 BASIC24.38■■□□□ 1.49
RPAP1Q9BWH6 DNAAF3-207ENST00000527223 2228 ntAPPRIS ALT2 TSL 2 BASIC24.38■■□□□ 1.49
RPAP1Q9BWH6 HCK-203ENST00000375862 1806 ntAPPRIS ALT2 TSL 1 (best) BASIC24.38■■□□□ 1.49
RPAP1Q9BWH6 RFT1-202ENST00000394738 1800 ntTSL 5 BASIC24.38■■□□□ 1.49
RPAP1Q9BWH6 SMIM11B-205ENST00000624304 1863 ntAPPRIS P1 TSL 1 (best) BASIC24.38■■□□□ 1.49
RPAP1Q9BWH6 ARHGDIA-201ENST00000269321 1906 ntAPPRIS P1 TSL 1 (best) BASIC24.38■■□□□ 1.49
RPAP1Q9BWH6 CDC42SE2-206ENST00000503291 2025 ntTSL 1 (best) BASIC24.38■■□□□ 1.49
RPAP1Q9BWH6 SHOX2-203ENST00000441443 3038 ntAPPRIS ALT2 TSL 5 BASIC24.38■■□□□ 1.49
RPAP1Q9BWH6 HP1BP3-202ENST00000375000 928 ntTSL 1 (best) BASIC24.38■■□□□ 1.49
RPAP1Q9BWH6 HOXD12-201ENST00000404162 841 ntTSL 1 (best) BASIC24.38■■□□□ 1.49
RPAP1Q9BWH6 LINC00708-201ENST00000428165 916 ntTSL 1 (best) BASIC24.38■■□□□ 1.49
RPAP1Q9BWH6 DTX3-208ENST00000551632 1840 ntAPPRIS ALT1 TSL 2 BASIC24.38■■□□□ 1.49
RPAP1Q9BWH6 SPON2-201ENST00000290902 1869 ntAPPRIS P1 TSL 1 (best) BASIC24.38■■□□□ 1.49
RPAP1Q9BWH6 AC020907.5-201ENST00000624372 1936 ntBASIC24.38■■□□□ 1.49
RPAP1Q9BWH6 FN3K-201ENST00000300784 1434 ntAPPRIS P1 TSL 1 (best) BASIC24.38■■□□□ 1.49
Retrieved 100 of 98,524 protein–RNA pairs in 31.8 ms