Protein–RNA interactions for Protein: Q9BSE4

HERPUD2, Homocysteine-responsive endoplasmic reticulum-resident ubiquitin-like domain member 2 protein, humanhuman

Predictions only

Length 406 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HERPUD2Q9BSE4 FGFR2-208ENST00000360144 3001 ntTSL 2 BASIC20.82■□□□□ 0.92
HERPUD2Q9BSE4 NAT8L-202ENST00000423729 5870 ntAPPRIS P1 TSL 1 (best) BASIC20.82■□□□□ 0.92
HERPUD2Q9BSE4 RAB34-204ENST00000395245 1766 ntAPPRIS P1 TSL 1 (best) BASIC20.82■□□□□ 0.92
HERPUD2Q9BSE4 TMEM179-206ENST00000616017 1645 ntBASIC20.82■□□□□ 0.92
HERPUD2Q9BSE4 PNLIPRP2-204ENST00000591655 1456 ntAPPRIS ALT1 TSL 5 BASIC20.81■□□□□ 0.92
HERPUD2Q9BSE4 AC006001.3-204ENST00000638711 2103 ntTSL 5 BASIC20.81■□□□□ 0.92
HERPUD2Q9BSE4 CERKL-203ENST00000374969 1330 ntTSL 1 (best) BASIC20.81■□□□□ 0.92
HERPUD2Q9BSE4 MARK2-202ENST00000361128 3004 ntAPPRIS ALT2 TSL 1 (best) BASIC20.81■□□□□ 0.92
HERPUD2Q9BSE4 GRK2-201ENST00000308595 3466 ntAPPRIS P1 TSL 1 (best) BASIC20.81■□□□□ 0.92
HERPUD2Q9BSE4 MOB3C-202ENST00000319928 2822 ntAPPRIS P1 TSL 2 BASIC20.81■□□□□ 0.92
HERPUD2Q9BSE4 LINC01976-201ENST00000565120 434 ntTSL 2 BASIC20.81■□□□□ 0.92
HERPUD2Q9BSE4 AC080038.1-201ENST00000611274 1154 ntBASIC20.81■□□□□ 0.92
HERPUD2Q9BSE4 DISC1-204ENST00000366633 2676 ntAPPRIS ALT2 TSL 1 (best) BASIC20.81■□□□□ 0.92
HERPUD2Q9BSE4 DISC1-214ENST00000539444 2658 ntAPPRIS ALT2 TSL 1 (best) BASIC20.81■□□□□ 0.92
HERPUD2Q9BSE4 ACAT1-201ENST00000265838 1761 ntAPPRIS P1 TSL 1 (best) BASIC20.81■□□□□ 0.92
HERPUD2Q9BSE4 TREX1-205ENST00000625293 1783 ntBASIC20.81■□□□□ 0.92
HERPUD2Q9BSE4 POLI-202ENST00000406285 2030 ntTSL 2 BASIC20.81■□□□□ 0.92
HERPUD2Q9BSE4 LINC01184-201ENST00000499346 1380 ntTSL 1 (best) BASIC20.81■□□□□ 0.92
HERPUD2Q9BSE4 NRL-206ENST00000561028 2103 ntAPPRIS P1 TSL 2 BASIC20.81■□□□□ 0.92
HERPUD2Q9BSE4 NAB2-201ENST00000300131 2711 ntAPPRIS P1 TSL 1 (best) BASIC20.81■□□□□ 0.92
HERPUD2Q9BSE4 TMEM109-202ENST00000536171 1959 ntAPPRIS P1 TSL 2 BASIC20.81■□□□□ 0.92
HERPUD2Q9BSE4 FGF17-202ENST00000518533 1706 ntTSL 1 (best) BASIC20.81■□□□□ 0.92
HERPUD2Q9BSE4 ACBD4-202ENST00000376955 1453 ntTSL 2 BASIC20.81■□□□□ 0.92
HERPUD2Q9BSE4 LEF1-203ENST00000438313 1488 ntAPPRIS ALT1 TSL 1 (best) BASIC20.81■□□□□ 0.92
HERPUD2Q9BSE4 FMNL2-201ENST00000288670 5575 ntAPPRIS P1 TSL 1 (best) BASIC20.8■□□□□ 0.92
HERPUD2Q9BSE4 TH-206ENST00000381178 1910 ntTSL 1 (best) BASIC20.8■□□□□ 0.92
HERPUD2Q9BSE4 KLHL31-202ENST00000407079 1905 ntAPPRIS P1 TSL 1 (best) BASIC20.8■□□□□ 0.92
HERPUD2Q9BSE4 BRSK2-201ENST00000308219 4089 ntAPPRIS P3 TSL 1 (best) BASIC20.8■□□□□ 0.92
HERPUD2Q9BSE4 CTBP2-205ENST00000411419 2036 ntAPPRIS P1 TSL 1 (best) BASIC20.8■□□□□ 0.92
HERPUD2Q9BSE4 AKAP8L-201ENST00000397410 2146 ntAPPRIS P1 TSL 1 (best) BASIC20.8■□□□□ 0.92
HERPUD2Q9BSE4 DMRT2-201ENST00000259622 2459 ntTSL 2 BASIC20.8■□□□□ 0.92
HERPUD2Q9BSE4 RNPS1-201ENST00000301730 1276 ntAPPRIS P1 TSL 2 BASIC20.8■□□□□ 0.92
HERPUD2Q9BSE4 CD99P1-203ENST00000431582 602 ntTSL 4 BASIC20.8■□□□□ 0.92
HERPUD2Q9BSE4 PBX1-209ENST00000485769 834 ntTSL 2 BASIC20.8■□□□□ 0.92
HERPUD2Q9BSE4 SLC35A2-211ENST00000634461 533 ntTSL 4 BASIC20.8■□□□□ 0.92
HERPUD2Q9BSE4 PIGQ-206ENST00000422307 2052 ntTSL 3 BASIC20.8■□□□□ 0.92
HERPUD2Q9BSE4 CLN3-240ENST00000631023 1586 ntTSL 5 BASIC20.8■□□□□ 0.92
HERPUD2Q9BSE4 LMAN1L-202ENST00000379709 1699 ntTSL 1 (best) BASIC20.8■□□□□ 0.92
HERPUD2Q9BSE4 FAM76A-205ENST00000419687 1661 ntTSL 2 BASIC20.8■□□□□ 0.92
HERPUD2Q9BSE4 CD37-204ENST00000535669 1674 ntTSL 2 BASIC20.8■□□□□ 0.92
HERPUD2Q9BSE4 EPN3-216ENST00000537145 2223 ntTSL 5 BASIC20.8■□□□□ 0.92
HERPUD2Q9BSE4 RNH1-202ENST00000356187 1791 ntAPPRIS P1 TSL 1 (best) BASIC20.8■□□□□ 0.92
HERPUD2Q9BSE4 MAFF-202ENST00000407965 2325 ntAPPRIS P1 TSL 2 BASIC20.79■□□□□ 0.92
HERPUD2Q9BSE4 AC011511.1-201ENST00000452032 1956 ntAPPRIS P1 TSL 2 BASIC20.79■□□□□ 0.92
HERPUD2Q9BSE4 AC005906.2-203ENST00000640962 2091 ntTSL 5 BASIC20.79■□□□□ 0.92
HERPUD2Q9BSE4 KLHL35-201ENST00000376292 1500 ntTSL 1 (best) BASIC20.79■□□□□ 0.92
HERPUD2Q9BSE4 C14orf79-202ENST00000547315 2370 ntAPPRIS P2 TSL 1 (best) BASIC20.79■□□□□ 0.92
HERPUD2Q9BSE4 FXR2-201ENST00000250113 2957 ntAPPRIS P1 TSL 1 (best) BASIC20.79■□□□□ 0.92
HERPUD2Q9BSE4 AL021707.1-201ENST00000416406 500 ntTSL 3 BASIC20.79■□□□□ 0.92
HERPUD2Q9BSE4 AL355472.2-201ENST00000422958 438 ntBASIC20.79■□□□□ 0.92
HERPUD2Q9BSE4 AL845552.2-201ENST00000553301 553 ntTSL 4 BASIC20.79■□□□□ 0.92
HERPUD2Q9BSE4 AC092143.4-201ENST00000570217 559 ntTSL 4 BASIC20.79■□□□□ 0.92
HERPUD2Q9BSE4 GFER-201ENST00000248114 2345 ntAPPRIS P1 TSL 1 (best) BASIC20.79■□□□□ 0.92
HERPUD2Q9BSE4 FMR1-201ENST00000218200 4333 ntAPPRIS ALT2 TSL 1 (best) BASIC20.79■□□□□ 0.92
HERPUD2Q9BSE4 RNF32-208ENST00000432459 1893 ntAPPRIS P1 TSL 1 (best) BASIC20.79■□□□□ 0.92
HERPUD2Q9BSE4 STIM2-204ENST00000467087 5154 ntAPPRIS ALT2 TSL 1 (best) BASIC20.79■□□□□ 0.92
HERPUD2Q9BSE4 PWWP2AP1-201ENST00000429776 2273 ntBASIC20.79■□□□□ 0.92
HERPUD2Q9BSE4 HOXA11-201ENST00000006015 2295 ntAPPRIS P1 TSL 1 (best) BASIC20.79■□□□□ 0.92
HERPUD2Q9BSE4 TNFRSF14-201ENST00000355716 1707 ntAPPRIS P2 TSL 1 (best) BASIC20.78■□□□□ 0.92
HERPUD2Q9BSE4 RAD23A-203ENST00000586534 1746 ntAPPRIS P3 TSL 1 (best) BASIC20.78■□□□□ 0.92
HERPUD2Q9BSE4 FAM129C-201ENST00000332386 2222 ntAPPRIS ALT2 TSL 1 (best) BASIC20.78■□□□□ 0.92
HERPUD2Q9BSE4 TRMT2A-201ENST00000252136 2964 ntAPPRIS P3 TSL 1 (best) BASIC20.78■□□□□ 0.92
HERPUD2Q9BSE4 ZSCAN1-201ENST00000282326 2054 ntAPPRIS P1 TSL 2 BASIC20.78■□□□□ 0.92
HERPUD2Q9BSE4 MAN1B1-AS1-201ENST00000596585 1872 ntBASIC20.78■□□□□ 0.92
HERPUD2Q9BSE4 CD55-203ENST00000367063 1691 ntAPPRIS ALT2 TSL 1 (best) BASIC20.78■□□□□ 0.92
HERPUD2Q9BSE4 SETD6-201ENST00000219315 1553 ntAPPRIS ALT2 TSL 1 (best) BASIC20.78■□□□□ 0.92
HERPUD2Q9BSE4 DGKQ-201ENST00000273814 4636 ntAPPRIS P2 TSL 1 (best) BASIC20.78■□□□□ 0.92
HERPUD2Q9BSE4 ORAI3-204ENST00000566237 1393 ntTSL 5 BASIC20.78■□□□□ 0.92
HERPUD2Q9BSE4 RHOD-201ENST00000308831 1129 ntAPPRIS P1 TSL 1 (best) BASIC20.78■□□□□ 0.92
HERPUD2Q9BSE4 CFD-201ENST00000327726 1201 ntAPPRIS P3 TSL 1 (best) BASIC20.78■□□□□ 0.92
HERPUD2Q9BSE4 TPSAB1-201ENST00000338844 1175 ntAPPRIS P2 TSL 1 (best) BASIC20.78■□□□□ 0.92
HERPUD2Q9BSE4 AC062017.1-203ENST00000413029 455 ntTSL 2 BASIC20.78■□□□□ 0.92
HERPUD2Q9BSE4 PGM5P4-201ENST00000421970 445 ntBASIC20.78■□□□□ 0.92
HERPUD2Q9BSE4 PTGER2-202ENST00000557436 643 ntTSL 3 BASIC20.78■□□□□ 0.92
HERPUD2Q9BSE4 AC106738.2-202ENST00000558156 533 ntTSL 4 BASIC20.78■□□□□ 0.92
HERPUD2Q9BSE4 PET100-202ENST00000594797 719 ntAPPRIS P1 TSL 1 (best) BASIC20.78■□□□□ 0.92
HERPUD2Q9BSE4 TMEM230-210ENST00000612323 1231 ntTSL 1 (best) BASIC20.78■□□□□ 0.92
HERPUD2Q9BSE4 GGTLC3-201ENST00000619998 968 ntAPPRIS P1 TSL 5 BASIC20.78■□□□□ 0.92
HERPUD2Q9BSE4 AC107959.1-202ENST00000502083 1945 ntTSL 1 (best) BASIC20.78■□□□□ 0.92
HERPUD2Q9BSE4 AC087289.5-201ENST00000586076 3175 ntBASIC20.78■□□□□ 0.92
HERPUD2Q9BSE4 CLN8-208ENST00000635751 1807 ntAPPRIS P1 TSL 5 BASIC20.78■□□□□ 0.92
HERPUD2Q9BSE4 LRP5-201ENST00000294304 5159 ntAPPRIS P1 TSL 1 (best) BASIC20.78■□□□□ 0.92
HERPUD2Q9BSE4 FUZ-216ENST00000533418 1524 ntTSL 5 BASIC20.78■□□□□ 0.92
HERPUD2Q9BSE4 NGLY1-202ENST00000280700 2473 ntAPPRIS P1 TSL 1 (best) BASIC20.78■□□□□ 0.92
HERPUD2Q9BSE4 STMN3-201ENST00000370053 2255 ntAPPRIS P1 TSL 1 (best) BASIC20.78■□□□□ 0.92
HERPUD2Q9BSE4 INSM2-201ENST00000307169 3013 ntAPPRIS P1 BASIC20.78■□□□□ 0.92
HERPUD2Q9BSE4 THOP1-202ENST00000395212 1877 ntTSL 2 BASIC20.77■□□□□ 0.92
HERPUD2Q9BSE4 DEDD2-204ENST00000595337 1894 ntAPPRIS P3 TSL 3 BASIC20.77■□□□□ 0.92
HERPUD2Q9BSE4 GCK-205ENST00000437084 1385 ntTSL 5 BASIC20.77■□□□□ 0.92
HERPUD2Q9BSE4 OIP5-201ENST00000220514 1236 ntAPPRIS P1 TSL 1 (best) BASIC20.77■□□□□ 0.92
HERPUD2Q9BSE4 CITED1-201ENST00000246139 1231 ntAPPRIS P3 TSL 1 (best) BASIC20.77■□□□□ 0.92
HERPUD2Q9BSE4 AIDA-202ENST00000355727 1072 ntTSL 5 BASIC20.77■□□□□ 0.92
HERPUD2Q9BSE4 MCRIP2P1-201ENST00000394346 511 ntBASIC20.77■□□□□ 0.92
HERPUD2Q9BSE4 METTL26-203ENST00000397664 604 ntTSL 2 BASIC20.77■□□□□ 0.92
HERPUD2Q9BSE4 APTR-203ENST00000430801 583 ntTSL 5 BASIC20.77■□□□□ 0.92
HERPUD2Q9BSE4 CYP2T1P-201ENST00000432607 1285 ntBASIC20.77■□□□□ 0.92
HERPUD2Q9BSE4 PRELID2-204ENST00000505416 738 ntAPPRIS P2 TSL 3 BASIC20.77■□□□□ 0.92
HERPUD2Q9BSE4 AC005789.1-201ENST00000585411 297 ntTSL 3 BASIC20.77■□□□□ 0.92
HERPUD2Q9BSE4 AC093762.2-201ENST00000641700 291 ntAPPRIS P1 BASIC20.77■□□□□ 0.92
HERPUD2Q9BSE4 TMEM259-209ENST00000592590 2509 ntTSL 5 BASIC20.77■□□□□ 0.92
Retrieved 100 of 98,524 protein–RNA pairs in 49.5 ms