Protein–RNA interactions for Protein: Q96K76

USP47, Ubiquitin carboxyl-terminal hydrolase 47, humanhuman

Predictions only

Length 1,375 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
USP47Q96K76 INTS11-202ENST00000411962 1832 ntTSL 5 BASIC28.19■■■□□ 2.1
USP47Q96K76 RTBDN-207ENST00000589272 2076 ntTSL 2 BASIC28.19■■■□□ 2.1
USP47Q96K76 NDRG2-215ENST00000553503 2162 ntAPPRIS ALT1 TSL 1 (best) BASIC28.18■■■□□ 2.1
USP47Q96K76 ST6GALNAC6-215ENST00000542456 2018 ntTSL 2 BASIC28.18■■■□□ 2.1
USP47Q96K76 SMIM3-201ENST00000526627 2332 ntAPPRIS P1 TSL 1 (best) BASIC28.18■■■□□ 2.1
USP47Q96K76 KIAA0895-204ENST00000415803 2865 ntTSL 1 (best) BASIC28.18■■■□□ 2.1
USP47Q96K76 CEBPA-201ENST00000498907 2631 ntAPPRIS P1 BASIC28.18■■■□□ 2.1
USP47Q96K76 SPDYE2-201ENST00000341656 1219 ntAPPRIS ALT2 TSL 1 (best) BASIC28.18■■■□□ 2.1
USP47Q96K76 AL390719.1-204ENST00000412397 1219 ntBASIC28.18■■■□□ 2.1
USP47Q96K76 SPDYE2B-202ENST00000455020 1219 ntAPPRIS ALT2 TSL 1 (best) BASIC28.18■■■□□ 2.1
USP47Q96K76 THAP6-213ENST00000514480 1161 ntAPPRIS P3 TSL 1 (best) BASIC28.18■■■□□ 2.1
USP47Q96K76 UNKL-205ENST00000397464 2180 ntTSL 2 BASIC28.18■■■□□ 2.1
USP47Q96K76 BCL7A-201ENST00000261822 2581 ntAPPRIS P1 TSL 1 (best) BASIC28.18■■■□□ 2.1
USP47Q96K76 AC245041.2-204ENST00000610809 1962 ntTSL 1 (best) BASIC28.18■■■□□ 2.1
USP47Q96K76 IL11RA-201ENST00000318041 1728 ntAPPRIS P1 TSL 1 (best) BASIC28.18■■■□□ 2.1
USP47Q96K76 DBNDD2-203ENST00000372710 1417 ntTSL 1 (best) BASIC28.18■■■□□ 2.1
USP47Q96K76 PCDHB12-202ENST00000622978 2093 ntTSL 2 BASIC28.18■■■□□ 2.1
USP47Q96K76 BABAM1-208ENST00000598188 1470 ntAPPRIS P3 TSL 1 (best) BASIC28.17■■■□□ 2.1
USP47Q96K76 TREX2-206ENST00000370232 1864 ntTSL 1 (best) BASIC28.17■■■□□ 2.1
USP47Q96K76 HOXB2-201ENST00000330070 1562 ntAPPRIS P1 TSL 1 (best) BASIC28.17■■■□□ 2.1
USP47Q96K76 MAL-201ENST00000309988 1112 ntAPPRIS P1 TSL 1 (best) BASIC28.17■■■□□ 2.1
USP47Q96K76 TMEM35B-201ENST00000373337 922 ntAPPRIS P1 TSL 1 (best) BASIC28.17■■■□□ 2.1
USP47Q96K76 DDR1-228ENST00000376575 732 ntTSL 1 (best) BASIC28.17■■■□□ 2.1
USP47Q96K76 LINC02531-201ENST00000404689 593 ntTSL 5 BASIC28.17■■■□□ 2.1
USP47Q96K76 SERTAD4-AS1-201ENST00000437764 726 ntTSL 1 (best) BASIC28.17■■■□□ 2.1
USP47Q96K76 HAGHL-213ENST00000564545 663 ntTSL 3 BASIC28.17■■■□□ 2.1
USP47Q96K76 AC009052.1-201ENST00000567090 298 ntTSL 3 BASIC28.17■■■□□ 2.1
USP47Q96K76 JADE2-211ENST00000612830 1251 ntTSL 1 (best) BASIC28.17■■■□□ 2.1
USP47Q96K76 LINC00482-201ENST00000332012 2023 ntTSL 1 (best) BASIC28.17■■■□□ 2.1
USP47Q96K76 MTMR9LP-204ENST00000441044 2624 ntTSL 1 (best) BASIC28.17■■■□□ 2.1
USP47Q96K76 SNCA-203ENST00000394986 1420 ntAPPRIS P1 TSL 1 (best) BASIC28.17■■■□□ 2.1
USP47Q96K76 PPARG-202ENST00000309576 1870 ntAPPRIS ALT1 TSL 2 BASIC28.17■■■□□ 2.1
USP47Q96K76 LINC01521-201ENST00000504184 1943 ntBASIC28.17■■■□□ 2.1
USP47Q96K76 DMAP1-202ENST00000361745 1545 ntAPPRIS P1 TSL 1 (best) BASIC28.17■■■□□ 2.1
USP47Q96K76 B4GALNT1-213ENST00000552350 1649 ntTSL 4 BASIC28.16■■■□□ 2.1
USP47Q96K76 ST3GAL3-239ENST00000545417 1667 ntTSL 5 BASIC28.16■■■□□ 2.1
USP47Q96K76 PDCD2-204ENST00000453163 2657 ntTSL 1 (best) BASIC28.16■■■□□ 2.1
USP47Q96K76 CCDC107-206ENST00000426546 1242 ntAPPRIS P3 TSL 1 (best) BASIC28.16■■■□□ 2.1
USP47Q96K76 CRIP2-202ENST00000483017 1176 ntTSL 2 BASIC28.16■■■□□ 2.1
USP47Q96K76 AC073912.1-201ENST00000546264 587 ntTSL 3 BASIC28.16■■■□□ 2.1
USP47Q96K76 AC084032.1-201ENST00000552324 578 ntTSL 4 BASIC28.16■■■□□ 2.1
USP47Q96K76 AC105020.4-201ENST00000569467 563 ntTSL 4 BASIC28.16■■■□□ 2.1
USP47Q96K76 MAZ-215ENST00000569978 567 ntTSL 1 (best) BASIC28.16■■■□□ 2.1
USP47Q96K76 AC069544.1-201ENST00000609399 999 ntBASIC28.16■■■□□ 2.1
USP47Q96K76 KMT5B-204ENST00000402185 1881 ntTSL 2 BASIC28.16■■■□□ 2.1
USP47Q96K76 ETV7-205ENST00000538992 1434 ntTSL 2 BASIC28.16■■■□□ 2.1
USP47Q96K76 ACHE-203ENST00000411582 2179 ntTSL 1 (best) BASIC28.16■■■□□ 2.1
USP47Q96K76 CIZ1-204ENST00000372938 2984 ntAPPRIS P3 TSL 1 (best) BASIC28.16■■■□□ 2.1
USP47Q96K76 DXO-202ENST00000375349 1667 ntAPPRIS P1 TSL 5 BASIC28.16■■■□□ 2.1
USP47Q96K76 TDRP-202ENST00000427263 2465 ntTSL 1 (best) BASIC28.15■■■□□ 2.1
USP47Q96K76 UBXN6-201ENST00000301281 1943 ntAPPRIS P1 TSL 1 (best) BASIC28.15■■■□□ 2.1
USP47Q96K76 BRICD5-201ENST00000328540 1913 ntAPPRIS P1 TSL 1 (best) BASIC28.15■■■□□ 2.1
USP47Q96K76 SUMO3-204ENST00000411651 1921 ntTSL 2 BASIC28.15■■■□□ 2.1
USP47Q96K76 PTPMT1-202ENST00000326674 768 ntAPPRIS P1 TSL 1 (best) BASIC28.15■■■□□ 2.1
USP47Q96K76 CEACAM3-201ENST00000344550 1022 ntAPPRIS ALT2 TSL 1 (best) BASIC28.15■■■□□ 2.1
USP47Q96K76 HLA-G-202ENST00000376815 851 ntBASIC28.15■■■□□ 2.1
USP47Q96K76 HLA-G-203ENST00000376818 1127 ntBASIC28.15■■■□□ 2.1
USP47Q96K76 POM121L13P-201ENST00000422362 380 ntBASIC28.15■■■□□ 2.1
USP47Q96K76 AL929601.1-201ENST00000551565 573 ntTSL 4 BASIC28.15■■■□□ 2.1
USP47Q96K76 GORASP1-220ENST00000479927 1345 ntTSL 2 BASIC28.15■■■□□ 2.1
USP47Q96K76 BRD4-202ENST00000360016 3240 ntAPPRIS ALT2 TSL 1 (best) BASIC28.15■■■□□ 2.1
USP47Q96K76 KREMEN2-201ENST00000303746 2326 ntAPPRIS P4 TSL 1 (best) BASIC28.15■■■□□ 2.1
USP47Q96K76 FAM66B-201ENST00000529456 1432 ntTSL 2 BASIC28.15■■■□□ 2.1
USP47Q96K76 PTGER3-203ENST00000354608 1470 ntAPPRIS ALT2 TSL 5 BASIC28.15■■■□□ 2.1
USP47Q96K76 RAD23A-203ENST00000586534 1746 ntAPPRIS P3 TSL 1 (best) BASIC28.15■■■□□ 2.1
USP47Q96K76 C15orf48-201ENST00000344300 875 ntAPPRIS P1 TSL 1 (best) BASIC28.14■■■□□ 2.1
USP47Q96K76 AC093827.2-201ENST00000512654 315 ntBASIC28.14■■■□□ 2.1
USP47Q96K76 AC006058.3-201ENST00000606217 1069 ntBASIC28.14■■■□□ 2.1
USP47Q96K76 HSD11B1L-204ENST00000411793 1362 ntTSL 1 (best) BASIC28.14■■■□□ 2.1
USP47Q96K76 WISP2-202ENST00000372865 1518 ntTSL 1 (best) BASIC28.14■■■□□ 2.1
USP47Q96K76 CBLC-201ENST00000270279 1579 ntAPPRIS P1 TSL 1 (best) BASIC28.14■■■□□ 2.1
USP47Q96K76 LINC01558-202ENST00000495520 1652 ntTSL 2 BASIC28.14■■■□□ 2.1
USP47Q96K76 ETV7-206ENST00000615781 1776 ntTSL 1 (best) BASIC28.14■■■□□ 2.1
USP47Q96K76 TINAGL1-211ENST00000537531 1841 ntAPPRIS ALT2 TSL 5 BASIC28.14■■■□□ 2.1
USP47Q96K76 QKI-207ENST00000453779 5685 ntTSL 1 (best) BASIC28.14■■■□□ 2.09
USP47Q96K76 AOC1-202ENST00000416793 2453 ntTSL 1 (best) BASIC28.14■■■□□ 2.09
USP47Q96K76 COCH-201ENST00000216361 2397 ntAPPRIS P1 TSL 1 (best) BASIC28.14■■■□□ 2.09
USP47Q96K76 SUMF2-208ENST00000434526 2052 ntAPPRIS P3 TSL 1 (best) BASIC28.14■■■□□ 2.09
USP47Q96K76 NPAS3-201ENST00000346562 5847 ntAPPRIS P3 TSL 1 (best) BASIC28.14■■■□□ 2.09
USP47Q96K76 AC099778.1-201ENST00000568593 1911 ntBASIC28.14■■■□□ 2.09
USP47Q96K76 ABHD17AP6-201ENST00000458502 1044 ntBASIC28.13■■■□□ 2.09
USP47Q96K76 ZNF346-203ENST00000503425 1191 ntTSL 2 BASIC28.13■■■□□ 2.09
USP47Q96K76 AC008443.1-203ENST00000505151 886 ntTSL 2 BASIC28.13■■■□□ 2.09
USP47Q96K76 ZNF688-205ENST00000563707 244 ntTSL 3 BASIC28.13■■■□□ 2.09
USP47Q96K76 DEDD2-205ENST00000596251 1183 ntAPPRIS P3 TSL 1 (best) BASIC28.13■■■□□ 2.09
USP47Q96K76 HSD17B12-213ENST00000637401 866 ntTSL 4 BASIC28.13■■■□□ 2.09
USP47Q96K76 EGLN2-202ENST00000406058 2150 ntAPPRIS P1 TSL 1 (best) BASIC28.13■■■□□ 2.09
USP47Q96K76 NF2-201ENST00000334961 2020 ntTSL 1 (best) BASIC28.13■■■□□ 2.09
USP47Q96K76 ASCL5-201ENST00000449188 2026 ntAPPRIS P1 TSL 3 BASIC28.13■■■□□ 2.09
USP47Q96K76 ZNF773-204ENST00000598770 2019 ntAPPRIS ALT2 TSL 2 BASIC28.13■■■□□ 2.09
USP47Q96K76 AC007249.2-201ENST00000553181 1737 ntTSL 5 BASIC28.13■■■□□ 2.09
USP47Q96K76 AL391422.3-201ENST00000603791 2761 ntBASIC28.13■■■□□ 2.09
USP47Q96K76 SPHK1-203ENST00000545180 2238 ntAPPRIS P3 TSL 2 BASIC28.12■■■□□ 2.09
USP47Q96K76 SERF1A-201ENST00000317633 963 ntAPPRIS P1 TSL 1 (best) BASIC28.12■■■□□ 2.09
USP47Q96K76 RUFY3-203ENST00000417478 2143 ntTSL 1 (best) BASIC28.12■■■□□ 2.09
USP47Q96K76 AC096537.1-201ENST00000437416 684 ntTSL 5 BASIC28.12■■■□□ 2.09
USP47Q96K76 DET1-205ENST00000558413 583 ntTSL 4 BASIC28.12■■■□□ 2.09
USP47Q96K76 AC120498.8-201ENST00000614275 531 ntBASIC28.12■■■□□ 2.09
USP47Q96K76 ITM2C-210ENST00000620962 501 ntBASIC28.12■■■□□ 2.09
USP47Q96K76 AC073648.6-201ENST00000641589 218 ntBASIC28.12■■■□□ 2.09
Retrieved 100 of 98,524 protein–RNA pairs in 20 ms