Protein–RNA interactions for Protein: Q8NDQ6

ZNF540, Zinc finger protein 540, humanhuman

Predictions only

Length 660 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
ZNF540Q8NDQ6 C14orf79-202ENST00000547315 2370 ntAPPRIS P2 TSL 1 (best) BASIC18.52■□□□□ 0.56
ZNF540Q8NDQ6 FGFR2-208ENST00000360144 3001 ntTSL 2 BASIC18.52■□□□□ 0.56
ZNF540Q8NDQ6 PRMT2-204ENST00000397628 954 ntTSL 2 BASIC18.52■□□□□ 0.56
ZNF540Q8NDQ6 OTUB1-212ENST00000543988 1259 ntTSL 1 (best) BASIC18.52■□□□□ 0.56
ZNF540Q8NDQ6 AC004528.2-201ENST00000610701 440 ntTSL 5 BASIC18.52■□□□□ 0.56
ZNF540Q8NDQ6 SLC35A2-212ENST00000634665 486 ntTSL 4 BASIC18.52■□□□□ 0.56
ZNF540Q8NDQ6 FOSL1-201ENST00000312562 1669 ntAPPRIS P1 TSL 1 (best) BASIC18.52■□□□□ 0.56
ZNF540Q8NDQ6 AC007192.1-201ENST00000593731 5142 ntAPPRIS P1 TSL 2 BASIC18.52■□□□□ 0.56
ZNF540Q8NDQ6 TMEM155-201ENST00000337677 2313 ntAPPRIS P2 TSL 1 (best) BASIC18.52■□□□□ 0.56
ZNF540Q8NDQ6 ADGRD2-201ENST00000334810 3244 ntAPPRIS P1 TSL 5 BASIC18.52■□□□□ 0.55
ZNF540Q8NDQ6 STAC-204ENST00000457375 1366 ntTSL 2 BASIC18.52■□□□□ 0.55
ZNF540Q8NDQ6 STX18-205ENST00000505286 1380 ntTSL 1 (best) BASIC18.52■□□□□ 0.55
ZNF540Q8NDQ6 CTBP2-205ENST00000411419 2036 ntAPPRIS P1 TSL 1 (best) BASIC18.52■□□□□ 0.55
ZNF540Q8NDQ6 HSD11B1L-201ENST00000301382 1457 ntTSL 1 (best) BASIC18.52■□□□□ 0.55
ZNF540Q8NDQ6 HOXB9-201ENST00000311177 2581 ntAPPRIS P1 TSL 1 (best) BASIC18.51■□□□□ 0.55
ZNF540Q8NDQ6 P2RY6-212ENST00000618468 2431 ntAPPRIS P1 TSL 3 BASIC18.51■□□□□ 0.55
ZNF540Q8NDQ6 TULP1-201ENST00000229771 2162 ntAPPRIS P2 TSL 1 (best) BASIC18.51■□□□□ 0.55
ZNF540Q8NDQ6 PFKFB3-204ENST00000379785 2181 ntTSL 5 BASIC18.51■□□□□ 0.55
ZNF540Q8NDQ6 SENP6-202ENST00000370010 4644 ntAPPRIS P3 TSL 1 (best) BASIC18.51■□□□□ 0.55
ZNF540Q8NDQ6 LYNX1-204ENST00000614491 4708 ntAPPRIS P1 TSL 2 BASIC18.51■□□□□ 0.55
ZNF540Q8NDQ6 KBTBD2-201ENST00000304056 3745 ntAPPRIS P1 TSL 1 (best) BASIC18.51■□□□□ 0.55
ZNF540Q8NDQ6 TCERG1L-201ENST00000368642 2618 ntAPPRIS P1 TSL 1 (best) BASIC18.51■□□□□ 0.55
ZNF540Q8NDQ6 EP300-201ENST00000263253 9587 ntAPPRIS P1 TSL 1 (best) BASIC18.51■□□□□ 0.55
ZNF540Q8NDQ6 SCARF2-203ENST00000623402 3248 ntAPPRIS P3 TSL 1 (best) BASIC18.51■□□□□ 0.55
ZNF540Q8NDQ6 KRT18P5-201ENST00000436075 1291 ntBASIC18.51■□□□□ 0.55
ZNF540Q8NDQ6 AC093817.1-201ENST00000507296 812 ntTSL 3 BASIC18.51■□□□□ 0.55
ZNF540Q8NDQ6 AL583722.4-201ENST00000555524 716 ntTSL 3 BASIC18.51■□□□□ 0.55
ZNF540Q8NDQ6 SUZ12P1-202ENST00000578070 929 ntTSL 5 BASIC18.51■□□□□ 0.55
ZNF540Q8NDQ6 AC022517.1-201ENST00000592429 346 ntBASIC18.51■□□□□ 0.55
ZNF540Q8NDQ6 AC105233.4-201ENST00000642045 216 ntBASIC18.51■□□□□ 0.55
ZNF540Q8NDQ6 WNT7B-204ENST00000410089 2202 ntTSL 5 BASIC18.51■□□□□ 0.55
ZNF540Q8NDQ6 SAMD11-211ENST00000616125 2230 ntAPPRIS ALT2 TSL 5 BASIC18.51■□□□□ 0.55
ZNF540Q8NDQ6 TMEM129-202ENST00000382936 2810 ntAPPRIS P1 TSL 1 (best) BASIC18.51■□□□□ 0.55
ZNF540Q8NDQ6 GATAD1-201ENST00000287957 3361 ntAPPRIS P1 TSL 1 (best) BASIC18.51■□□□□ 0.55
ZNF540Q8NDQ6 KANK4-204ENST00000371153 4665 ntAPPRIS P1 TSL 1 (best) BASIC18.51■□□□□ 0.55
ZNF540Q8NDQ6 MBD3-207ENST00000590550 2782 ntTSL 2 BASIC18.51■□□□□ 0.55
ZNF540Q8NDQ6 MRPL37-202ENST00000360840 1483 ntAPPRIS P1 TSL 1 (best) BASIC18.51■□□□□ 0.55
ZNF540Q8NDQ6 FAM198A-202ENST00000430121 3121 ntAPPRIS P2 TSL 5 BASIC18.51■□□□□ 0.55
ZNF540Q8NDQ6 TRMU-201ENST00000290846 1940 ntAPPRIS P1 TSL 1 (best) BASIC18.51■□□□□ 0.55
ZNF540Q8NDQ6 PCDHAC2-201ENST00000289269 5963 ntAPPRIS P1 TSL 1 (best) BASIC18.51■□□□□ 0.55
ZNF540Q8NDQ6 LINC01558-202ENST00000495520 1652 ntTSL 2 BASIC18.5■□□□□ 0.55
ZNF540Q8NDQ6 CHRDL2-210ENST00000622063 1691 ntTSL 5 BASIC18.5■□□□□ 0.55
ZNF540Q8NDQ6 TDRKH-203ENST00000368824 2824 ntAPPRIS P2 TSL 1 (best) BASIC18.5■□□□□ 0.55
ZNF540Q8NDQ6 EXOG-203ENST00000422077 1317 ntTSL 2 BASIC18.5■□□□□ 0.55
ZNF540Q8NDQ6 EI24-201ENST00000278903 2455 ntAPPRIS P1 TSL 1 (best) BASIC18.5■□□□□ 0.55
ZNF540Q8NDQ6 EGFL7-203ENST00000371699 2125 ntAPPRIS P1 TSL 2 BASIC18.5■□□□□ 0.55
ZNF540Q8NDQ6 ZFAND2B-202ENST00000409097 1765 ntTSL 2 BASIC18.5■□□□□ 0.55
ZNF540Q8NDQ6 CDCP1-202ENST00000425231 1416 ntAPPRIS ALT2 TSL 1 (best) BASIC18.5■□□□□ 0.55
ZNF540Q8NDQ6 EML3-217ENST00000531557 2509 ntTSL 5 BASIC18.5■□□□□ 0.55
ZNF540Q8NDQ6 IQCJ-SCHIP1-207ENST00000638749 2633 ntAPPRIS P3 TSL 1 (best) BASIC18.5■□□□□ 0.55
ZNF540Q8NDQ6 TOLLIP-201ENST00000263646 2283 ntTSL 5 BASIC18.5■□□□□ 0.55
ZNF540Q8NDQ6 UBXN11-201ENST00000314675 2254 ntAPPRIS ALT2 TSL 2 BASIC18.5■□□□□ 0.55
ZNF540Q8NDQ6 TNFRSF18-202ENST00000379265 705 ntAPPRIS ALT2 TSL 1 (best) BASIC18.5■□□□□ 0.55
ZNF540Q8NDQ6 MFF-208ENST00000409616 1247 ntTSL 5 BASIC18.5■□□□□ 0.55
ZNF540Q8NDQ6 TUNAR-203ENST00000554321 767 ntAPPRIS P1 TSL 4 BASIC18.5■□□□□ 0.55
ZNF540Q8NDQ6 DUX4L2-201ENST00000561772 1275 ntBASIC18.5■□□□□ 0.55
ZNF540Q8NDQ6 ELANE-202ENST00000590230 1028 ntAPPRIS P1 TSL 5 BASIC18.5■□□□□ 0.55
ZNF540Q8NDQ6 LGI4-206ENST00000591633 1113 ntTSL 1 (best) BASIC18.5■□□□□ 0.55
ZNF540Q8NDQ6 DUX4-206ENST00000616166 1275 ntAPPRIS P2 BASIC18.5■□□□□ 0.55
ZNF540Q8NDQ6 MIR6084-201ENST00000622012 110 ntBASIC18.5■□□□□ 0.55
ZNF540Q8NDQ6 DUX4L6-201ENST00000626483 1275 ntBASIC18.5■□□□□ 0.55
ZNF540Q8NDQ6 DUX4L1-201ENST00000627662 1275 ntBASIC18.5■□□□□ 0.55
ZNF540Q8NDQ6 DUX4L8-201ENST00000629013 1275 ntBASIC18.5■□□□□ 0.55
ZNF540Q8NDQ6 DUX4L3-201ENST00000630187 1275 ntBASIC18.5■□□□□ 0.55
ZNF540Q8NDQ6 DUX4L7-201ENST00000630678 1275 ntBASIC18.5■□□□□ 0.55
ZNF540Q8NDQ6 DUX4L5-201ENST00000630834 1275 ntBASIC18.5■□□□□ 0.55
ZNF540Q8NDQ6 SLC35A3-213ENST00000638988 1286 ntTSL 5 BASIC18.5■□□□□ 0.55
ZNF540Q8NDQ6 AZIN1-201ENST00000337198 4721 ntAPPRIS P1 TSL 1 (best) BASIC18.5■□□□□ 0.55
ZNF540Q8NDQ6 CADPS2-202ENST00000334010 6045 ntAPPRIS ALT2 TSL 5 BASIC18.5■□□□□ 0.55
ZNF540Q8NDQ6 ANAPC1P1-202ENST00000616781 1771 ntTSL 1 (best) BASIC18.5■□□□□ 0.55
ZNF540Q8NDQ6 ASCL2-201ENST00000331289 1852 ntAPPRIS P1 TSL 1 (best) BASIC18.5■□□□□ 0.55
ZNF540Q8NDQ6 TMCO6-203ENST00000394671 1887 ntAPPRIS P1 TSL 2 BASIC18.5■□□□□ 0.55
ZNF540Q8NDQ6 HR-202ENST00000381418 6336 ntAPPRIS P1 TSL 1 (best) BASIC18.5■□□□□ 0.55
ZNF540Q8NDQ6 SGO1-209ENST00000442720 2266 ntAPPRIS ALT2 TSL 1 (best) BASIC18.49■□□□□ 0.55
ZNF540Q8NDQ6 MAN1A1-201ENST00000368468 5014 ntAPPRIS P1 TSL 2 BASIC18.49■□□□□ 0.55
ZNF540Q8NDQ6 MORF4L1-201ENST00000331268 2359 ntTSL 1 (best) BASIC18.49■□□□□ 0.55
ZNF540Q8NDQ6 CLN3-207ENST00000395653 1430 ntTSL 5 BASIC18.49■□□□□ 0.55
ZNF540Q8NDQ6 PRKRA-201ENST00000325748 1826 ntAPPRIS P1 TSL 1 (best) BASIC18.49■□□□□ 0.55
ZNF540Q8NDQ6 INTS11-202ENST00000411962 1832 ntTSL 5 BASIC18.49■□□□□ 0.55
ZNF540Q8NDQ6 DAG1-221ENST00000541308 5676 ntAPPRIS P1 TSL 5 BASIC18.49■□□□□ 0.55
ZNF540Q8NDQ6 PGS1-201ENST00000262764 2201 ntAPPRIS P1 TSL 1 (best) BASIC18.49■□□□□ 0.55
ZNF540Q8NDQ6 PRSS36-202ENST00000418068 2446 ntTSL 2 BASIC18.49■□□□□ 0.55
ZNF540Q8NDQ6 MIDN-206ENST00000591446 3243 ntAPPRIS P2 TSL 1 (best) BASIC18.49■□□□□ 0.55
ZNF540Q8NDQ6 GZMM-201ENST00000264553 940 ntAPPRIS P1 TSL 1 (best) BASIC18.49■□□□□ 0.55
ZNF540Q8NDQ6 LY6E-201ENST00000292494 1181 ntAPPRIS P2 TSL 1 (best) BASIC18.49■□□□□ 0.55
ZNF540Q8NDQ6 POLR2F-203ENST00000407936 582 ntTSL 3 BASIC18.49■□□□□ 0.55
ZNF540Q8NDQ6 GXYLT1P2-201ENST00000433312 1230 ntBASIC18.49■□□□□ 0.55
ZNF540Q8NDQ6 POLR2F-207ENST00000460648 518 ntTSL 4 BASIC18.49■□□□□ 0.55
ZNF540Q8NDQ6 CTAG1A-201ENST00000593606 993 ntTSL 5 BASIC18.49■□□□□ 0.55
ZNF540Q8NDQ6 H2AFB3-201ENST00000615853 591 ntAPPRIS P1 BASIC18.49■□□□□ 0.55
ZNF540Q8NDQ6 TUSC3-203ENST00000503731 1498 ntAPPRIS P4 TSL 1 (best) BASIC18.49■□□□□ 0.55
ZNF540Q8NDQ6 SNAP91-211ENST00000520213 2168 ntTSL 1 (best) BASIC18.49■□□□□ 0.55
ZNF540Q8NDQ6 FOLH1-203ENST00000343844 2258 ntTSL 2 BASIC18.49■□□□□ 0.55
ZNF540Q8NDQ6 ST3GAL3-206ENST00000351035 2377 ntTSL 5 BASIC18.49■□□□□ 0.55
ZNF540Q8NDQ6 STX17-212ENST00000534052 2424 ntAPPRIS P1 TSL 1 (best) BASIC18.49■□□□□ 0.55
ZNF540Q8NDQ6 KIF22-201ENST00000160827 2113 ntAPPRIS P1 TSL 1 (best) BASIC18.49■□□□□ 0.55
ZNF540Q8NDQ6 WFIKKN1-201ENST00000319070 2028 ntAPPRIS P1 TSL 1 (best) BASIC18.49■□□□□ 0.55
ZNF540Q8NDQ6 SLC25A10-201ENST00000331531 1946 ntTSL 1 (best) BASIC18.49■□□□□ 0.55
ZNF540Q8NDQ6 ABHD12B-201ENST00000337334 1708 ntAPPRIS ALT2 TSL 1 (best) BASIC18.49■□□□□ 0.55
ZNF540Q8NDQ6 PNKP-214ENST00000600573 1602 ntTSL 5 BASIC18.49■□□□□ 0.55
Retrieved 100 of 98,524 protein–RNA pairs in 42.5 ms