Protein–RNA interactions for Protein: Q8IXS2

CCDC65, Coiled-coil domain-containing protein 65, humanhuman

Predictions only

Length 484 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC65Q8IXS2 LINC00482-201ENST00000332012 2023 ntTSL 1 (best) BASIC22.29■■□□□ 1.16
CCDC65Q8IXS2 TP53RK-201ENST00000372102 2012 ntTSL 1 (best) BASIC22.29■■□□□ 1.16
CCDC65Q8IXS2 UBAP1-204ENST00000625521 2029 ntTSL 2 BASIC22.29■■□□□ 1.16
CCDC65Q8IXS2 PQLC2-201ENST00000375153 2153 ntAPPRIS P1 TSL 2 BASIC22.29■■□□□ 1.16
CCDC65Q8IXS2 FBXW8-201ENST00000309909 2343 ntAPPRIS P1 TSL 1 (best) BASIC22.29■■□□□ 1.16
CCDC65Q8IXS2 TINAGL1-211ENST00000537531 1841 ntAPPRIS ALT2 TSL 5 BASIC22.29■■□□□ 1.16
CCDC65Q8IXS2 BX119927.1-201ENST00000636596 1552 ntBASIC22.29■■□□□ 1.16
CCDC65Q8IXS2 PDZD3-201ENST00000322712 2204 ntTSL 1 (best) BASIC22.29■■□□□ 1.16
CCDC65Q8IXS2 IRF7-205ENST00000397574 1968 ntAPPRIS ALT2 TSL 1 (best) BASIC22.29■■□□□ 1.16
CCDC65Q8IXS2 TSSK6-201ENST00000585580 1467 ntAPPRIS P1 BASIC22.28■■□□□ 1.16
CCDC65Q8IXS2 AC112907.3-201ENST00000577781 2400 ntBASIC22.28■■□□□ 1.16
CCDC65Q8IXS2 UBXN6-201ENST00000301281 1943 ntAPPRIS P1 TSL 1 (best) BASIC22.28■■□□□ 1.16
CCDC65Q8IXS2 CHST1-201ENST00000308064 2718 ntAPPRIS P1 TSL 1 (best) BASIC22.28■■□□□ 1.16
CCDC65Q8IXS2 CRHR1-203ENST00000339069 2490 ntTSL 2 BASIC22.28■■□□□ 1.16
CCDC65Q8IXS2 ADRA1A-203ENST00000380572 1697 ntTSL 1 (best) BASIC22.28■■□□□ 1.16
CCDC65Q8IXS2 INPP4A-201ENST00000074304 6752 ntTSL 5 BASIC22.28■■□□□ 1.16
CCDC65Q8IXS2 TMPO-201ENST00000261210 820 ntTSL 1 (best) BASIC22.28■■□□□ 1.16
CCDC65Q8IXS2 NFS1-201ENST00000306750 738 ntTSL 1 (best) BASIC22.28■■□□□ 1.16
CCDC65Q8IXS2 LINC00471-201ENST00000313064 1282 ntTSL 1 (best) BASIC22.28■■□□□ 1.16
CCDC65Q8IXS2 NAA20-202ENST00000334982 1260 ntAPPRIS P1 TSL 1 (best) BASIC22.28■■□□□ 1.16
CCDC65Q8IXS2 PPP1CA-202ENST00000358239 1054 ntTSL 2 BASIC22.28■■□□□ 1.16
CCDC65Q8IXS2 MAP2K4P1-201ENST00000438453 1195 ntBASIC22.28■■□□□ 1.16
CCDC65Q8IXS2 ALKBH6-212ENST00000485128 959 ntTSL 5 BASIC22.28■■□□□ 1.16
CCDC65Q8IXS2 ATRAID-208ENST00000611786 1256 ntTSL 1 (best) BASIC22.28■■□□□ 1.16
CCDC65Q8IXS2 TPBGL-201ENST00000562197 2793 ntAPPRIS P1 BASIC22.28■■□□□ 1.16
CCDC65Q8IXS2 PFKFB3-202ENST00000360521 1964 ntAPPRIS P2 TSL 5 BASIC22.28■■□□□ 1.16
CCDC65Q8IXS2 SUMF2-201ENST00000275607 1894 ntTSL 1 (best) BASIC22.28■■□□□ 1.16
CCDC65Q8IXS2 WIPF1-203ENST00000392546 2180 ntAPPRIS P2 TSL 5 BASIC22.28■■□□□ 1.16
CCDC65Q8IXS2 SNRPA-201ENST00000243563 1621 ntAPPRIS P1 TSL 1 (best) BASIC22.28■■□□□ 1.16
CCDC65Q8IXS2 AR-204ENST00000504326 3615 ntTSL 1 (best) BASIC22.27■■□□□ 1.16
CCDC65Q8IXS2 CLDN5-204ENST00000618236 1374 ntAPPRIS P1 BASIC22.27■■□□□ 1.16
CCDC65Q8IXS2 WDR25-201ENST00000335290 2123 ntAPPRIS P1 TSL 1 (best) BASIC22.27■■□□□ 1.16
CCDC65Q8IXS2 CHST8-203ENST00000438847 2133 ntAPPRIS P1 TSL 1 (best) BASIC22.27■■□□□ 1.16
CCDC65Q8IXS2 NRG2-204ENST00000358522 2559 ntAPPRIS P5 TSL 1 (best) BASIC22.27■■□□□ 1.16
CCDC65Q8IXS2 RTN1-202ENST00000342503 1703 ntAPPRIS ALT1 TSL 1 (best) BASIC22.27■■□□□ 1.16
CCDC65Q8IXS2 PRELID3B-201ENST00000355937 2626 ntAPPRIS P1 TSL 1 (best) BASIC22.27■■□□□ 1.16
CCDC65Q8IXS2 CD8B-205ENST00000393761 932 ntTSL 1 (best) BASIC22.27■■□□□ 1.16
CCDC65Q8IXS2 GPR35-202ENST00000403859 2032 ntAPPRIS P3 TSL 2 BASIC22.27■■□□□ 1.16
CCDC65Q8IXS2 CD8B-206ENST00000431506 692 ntAPPRIS ALT2 TSL 5 BASIC22.27■■□□□ 1.16
CCDC65Q8IXS2 TSPY6P-201ENST00000448518 926 ntBASIC22.27■■□□□ 1.16
CCDC65Q8IXS2 KRT8P17-201ENST00000453110 1448 ntBASIC22.27■■□□□ 1.16
CCDC65Q8IXS2 GXYLT1P5-201ENST00000614548 1189 ntBASIC22.27■■□□□ 1.16
CCDC65Q8IXS2 ZNF276-208ENST00000568064 2203 ntTSL 5 BASIC22.27■■□□□ 1.16
CCDC65Q8IXS2 SNX3-201ENST00000230085 1755 ntAPPRIS P1 TSL 1 (best) BASIC22.27■■□□□ 1.16
CCDC65Q8IXS2 RASL12-201ENST00000220062 2640 ntAPPRIS P1 TSL 1 (best) BASIC22.27■■□□□ 1.15
CCDC65Q8IXS2 ST3GAL3-239ENST00000545417 1667 ntTSL 5 BASIC22.26■■□□□ 1.15
CCDC65Q8IXS2 NFKBIE-204ENST00000619360 2327 ntAPPRIS P1 TSL 1 (best) BASIC22.26■■□□□ 1.15
CCDC65Q8IXS2 RNH1-206ENST00000438658 1725 ntAPPRIS P1 TSL 1 (best) BASIC22.26■■□□□ 1.15
CCDC65Q8IXS2 PCDH8-202ENST00000377942 5088 ntAPPRIS P4 TSL 1 (best) BASIC22.26■■□□□ 1.15
CCDC65Q8IXS2 TCF3P1-201ENST00000423021 1937 ntBASIC22.26■■□□□ 1.15
CCDC65Q8IXS2 SPG7-202ENST00000341316 2288 ntTSL 1 (best) BASIC22.26■■□□□ 1.15
CCDC65Q8IXS2 C19orf66-201ENST00000253110 2117 ntAPPRIS P3 TSL 2 BASIC22.26■■□□□ 1.15
CCDC65Q8IXS2 GUSBP6-202ENST00000438529 1198 ntBASIC22.26■■□□□ 1.15
CCDC65Q8IXS2 DNAJA4-210ENST00000489435 947 ntTSL 3 BASIC22.26■■□□□ 1.15
CCDC65Q8IXS2 AC090192.1-201ENST00000517740 490 ntBASIC22.26■■□□□ 1.15
CCDC65Q8IXS2 ZNF696-204ENST00000520333 605 ntTSL 5 BASIC22.26■■□□□ 1.15
CCDC65Q8IXS2 AL031963.3-201ENST00000606441 850 ntBASIC22.26■■□□□ 1.15
CCDC65Q8IXS2 CHD1L-201ENST00000361293 2484 ntTSL 2 BASIC22.26■■□□□ 1.15
CCDC65Q8IXS2 NKX3-2-201ENST00000382438 2801 ntAPPRIS P1 TSL 1 (best) BASIC22.26■■□□□ 1.15
CCDC65Q8IXS2 TAF7-201ENST00000313368 2334 ntAPPRIS P1 BASIC22.26■■□□□ 1.15
CCDC65Q8IXS2 SPOCK3-204ENST00000502330 2180 ntAPPRIS ALT2 TSL 1 (best) BASIC22.26■■□□□ 1.15
CCDC65Q8IXS2 SHISA7-201ENST00000376325 6033 ntAPPRIS P2 TSL 2 BASIC22.26■■□□□ 1.15
CCDC65Q8IXS2 MRFAP1-201ENST00000320912 2049 ntAPPRIS P1 TSL 2 BASIC22.26■■□□□ 1.15
CCDC65Q8IXS2 ST6GALNAC6-215ENST00000542456 2018 ntTSL 2 BASIC22.26■■□□□ 1.15
CCDC65Q8IXS2 DYNLT3-201ENST00000378578 2217 ntAPPRIS P1 TSL 1 (best) BASIC22.26■■□□□ 1.15
CCDC65Q8IXS2 CSPG5-203ENST00000456150 2089 ntTSL 1 (best) BASIC22.26■■□□□ 1.15
CCDC65Q8IXS2 TSEN15-203ENST00000423085 1743 ntTSL 2 BASIC22.26■■□□□ 1.15
CCDC65Q8IXS2 NMRAL1-213ENST00000574733 1719 ntAPPRIS P1 TSL 5 BASIC22.26■■□□□ 1.15
CCDC65Q8IXS2 SPESP1-201ENST00000310673 1431 ntAPPRIS P1 TSL 1 (best) BASIC22.25■■□□□ 1.15
CCDC65Q8IXS2 PADI2-201ENST00000375481 1607 ntTSL 1 (best) BASIC22.25■■□□□ 1.15
CCDC65Q8IXS2 KRTAP5-8-201ENST00000398534 1183 ntAPPRIS P1 BASIC22.25■■□□□ 1.15
CCDC65Q8IXS2 CCDC103-202ENST00000410006 921 ntAPPRIS P1 TSL 2 BASIC22.25■■□□□ 1.15
CCDC65Q8IXS2 DIMT1-202ENST00000506390 1208 ntTSL 1 (best) BASIC22.25■■□□□ 1.15
CCDC65Q8IXS2 ZNF324-202ENST00000535298 1006 ntTSL 5 BASIC22.25■■□□□ 1.15
CCDC65Q8IXS2 AC027307.1-201ENST00000590252 457 ntTSL 5 BASIC22.25■■□□□ 1.15
CCDC65Q8IXS2 AC092118.2-201ENST00000613495 667 ntBASIC22.25■■□□□ 1.15
CCDC65Q8IXS2 OGFR-204ENST00000621591 1194 ntTSL 5 BASIC22.25■■□□□ 1.15
CCDC65Q8IXS2 HAUS4-202ENST00000342454 1474 ntTSL 1 (best) BASIC22.25■■□□□ 1.15
CCDC65Q8IXS2 HDAC2-201ENST00000368632 2084 ntTSL 2 BASIC22.25■■□□□ 1.15
CCDC65Q8IXS2 MSLN-201ENST00000382862 2116 ntAPPRIS P3 TSL 5 BASIC22.25■■□□□ 1.15
CCDC65Q8IXS2 WDR37-203ENST00000381329 1307 ntTSL 1 (best) BASIC22.25■■□□□ 1.15
CCDC65Q8IXS2 SNAP91-211ENST00000520213 2168 ntTSL 1 (best) BASIC22.25■■□□□ 1.15
CCDC65Q8IXS2 MTUS2-202ENST00000380808 1793 ntAPPRIS P3 TSL 1 (best) BASIC22.25■■□□□ 1.15
CCDC65Q8IXS2 WT1-212ENST00000640146 1554 ntAPPRIS P3 TSL 1 (best) BASIC22.25■■□□□ 1.15
CCDC65Q8IXS2 C7orf43-206ENST00000456769 2046 ntTSL 2 BASIC22.24■■□□□ 1.15
CCDC65Q8IXS2 GNA14-201ENST00000341700 2482 ntAPPRIS P1 TSL 1 (best) BASIC22.24■■□□□ 1.15
CCDC65Q8IXS2 SNX27-204ENST00000458013 6403 ntAPPRIS ALT1 TSL 5 BASIC22.24■■□□□ 1.15
CCDC65Q8IXS2 ATG101-201ENST00000336854 1439 ntAPPRIS P1 TSL 1 (best) BASIC22.24■■□□□ 1.15
CCDC65Q8IXS2 KRT8P20-201ENST00000423953 1409 ntBASIC22.24■■□□□ 1.15
CCDC65Q8IXS2 SOX8-201ENST00000293894 3049 ntAPPRIS P1 TSL 1 (best) BASIC22.24■■□□□ 1.15
CCDC65Q8IXS2 FUT4-201ENST00000358752 6059 ntAPPRIS P1 BASIC22.24■■□□□ 1.15
CCDC65Q8IXS2 BHLHA15-201ENST00000314018 706 ntAPPRIS P1 BASIC22.24■■□□□ 1.15
CCDC65Q8IXS2 RRAS2-203ENST00000526063 970 ntTSL 1 (best) BASIC22.24■■□□□ 1.15
CCDC65Q8IXS2 RRAS2-208ENST00000532814 982 ntTSL 1 (best) BASIC22.24■■□□□ 1.15
CCDC65Q8IXS2 AC073896.1-201ENST00000549318 937 ntAPPRIS P1 TSL 5 BASIC22.24■■□□□ 1.15
CCDC65Q8IXS2 AC091138.1-202ENST00000578967 457 ntTSL 2 BASIC22.24■■□□□ 1.15
CCDC65Q8IXS2 YIF1B-213ENST00000591755 1077 ntTSL 2 BASIC22.24■■□□□ 1.15
CCDC65Q8IXS2 VIM-AS1-202ENST00000605833 918 ntTSL 3 BASIC22.24■■□□□ 1.15
CCDC65Q8IXS2 BHLHA15-202ENST00000609256 796 ntAPPRIS P1 TSL 3 BASIC22.24■■□□□ 1.15
CCDC65Q8IXS2 VPS53-201ENST00000291074 2656 ntTSL 1 (best) BASIC22.24■■□□□ 1.15
Retrieved 100 of 98,524 protein–RNA pairs in 31.4 ms