Protein–RNA interactions for Protein: Q01477

UBP3, Ubiquitin carboxyl-terminal hydrolase 3, yeastyeast

Known RBP RIP-Chip data

Length 912 aa.

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Protein RNA Prediction (catRAPID) Interaction (RIP-Chip)
Gene UniProt Accession Gene Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score Detected Interaction
UBP3Q01477 ZRG17YNR039C 1818 nt2.47□□□□□ -2.01
UBP3Q01477 FIG4YNL325C 2640 nt2.47□□□□□ -2.01
UBP3Q01477 YMR242W-AYMR242W-A 90 nt2.47□□□□□ -2.01
UBP3Q01477 TOF1YNL273W 3717 nt2.46□□□□□ -2.01
UBP3Q01477 IRA2YOL081W 9240 nt2.46□□□□□ -2.02
UBP3Q01477 TFB5YDR079C-A 219 nt2.46□□□□□ -2.02
UBP3Q01477 YOR102WYOR102W 351 nt2.46□□□□□ -2.02
UBP3Q01477 YOR314W-AYOR314W-A 111 nt2.46□□□□□ -2.02
UBP3Q01477 SCD5YOR329C 2619 nt2.46□□□□□ -2.02 RIP-Chip
UBP3Q01477 RPL31AYDL075W 342 nt2.45□□□□□ -2.02
UBP3Q01477 SAC3YDR159W 3906 nt2.45□□□□□ -2.02
UBP3Q01477 IFH1YLR223C 3258 nt2.44□□□□□ -2.02
UBP3Q01477 HER1YOR227W 3741 nt2.44□□□□□ -2.02
UBP3Q01477 ATG9YDL149W 2994 nt2.43□□□□□ -2.02 RIP-Chip
UBP3Q01477 YOR108C-AYOR108C-A 210 nt2.43□□□□□ -2.02
UBP3Q01477 YPL044CYPL044C 549 nt2.43□□□□□ -2.02
UBP3Q01477 TFC3YAL001C 3483 nt2.43□□□□□ -2.02 RIP-Chip
UBP3Q01477 ZIP2YGL249W 2115 nt2.42□□□□□ -2.02
UBP3Q01477 AIM44YPL158C 2277 nt2.42□□□□□ -2.02
UBP3Q01477 YHL015W-AYHL015W-A 84 nt2.42□□□□□ -2.02
UBP3Q01477 YHR217CYHR217C 462 nt2.42□□□□□ -2.02
UBP3Q01477 CTR9YOL145C 3234 nt2.42□□□□□ -2.02
UBP3Q01477 RGA1YOR127W 3024 nt2.42□□□□□ -2.02
UBP3Q01477 MAD1YGL086W 2250 nt2.42□□□□□ -2.02
UBP3Q01477 APL2YKL135C 2181 nt2.42□□□□□ -2.02
UBP3Q01477 MAK10YEL053C 2202 nt2.41□□□□□ -2.02 RIP-Chip
UBP3Q01477 YIL134C-AYIL134C-A 204 nt2.41□□□□□ -2.02
UBP3Q01477 NOP14YDL148C 2433 nt2.41□□□□□ -2.02
UBP3Q01477 YLR035C-AYLR035C-A 3468 nt2.41□□□□□ -2.02
UBP3Q01477 DNF1YER166W 4716 nt2.4□□□□□ -2.02 RIP-Chip
UBP3Q01477 AHC1YOR023C 1701 nt2.4□□□□□ -2.02 RIP-Chip
UBP3Q01477 MSH6YDR097C 3729 nt2.4□□□□□ -2.03
UBP3Q01477 VPS13YLL040C 9435 nt2.4□□□□□ -2.03 RIP-Chip
UBP3Q01477 DCP2YNL118C 2913 nt2.39□□□□□ -2.03
UBP3Q01477 SEY1YOR165W 2331 nt2.39□□□□□ -2.03
UBP3Q01477 YER053C-AYER053C-A 114 nt2.39□□□□□ -2.03
UBP3Q01477 YFR012W-AYFR012W-A 87 nt2.39□□□□□ -2.03
UBP3Q01477 SEC16YPL085W 6588 nt2.39□□□□□ -2.03
UBP3Q01477 SEC31YDL195W 3822 nt2.38□□□□□ -2.03
UBP3Q01477 YHR180W-AYHR180W-A 183 nt2.38□□□□□ -2.03
UBP3Q01477 SAP190YKR028W 3102 nt2.38□□□□□ -2.03
UBP3Q01477 MSH5YDL154W 2706 nt2.38□□□□□ -2.03 RIP-Chip
UBP3Q01477 SEC63YOR254C 1992 nt2.38□□□□□ -2.03
UBP3Q01477 PIP2YOR363C 2991 nt2.37□□□□□ -2.03
UBP3Q01477 SLD3YGL113W 2007 nt2.37□□□□□ -2.03
UBP3Q01477 YDL118WYDL118W 381 nt2.37□□□□□ -2.03
UBP3Q01477 PDR8YLR266C 2106 nt2.37□□□□□ -2.03
UBP3Q01477 ZIP1YDR285W 2628 nt2.37□□□□□ -2.03
UBP3Q01477 IRE1YHR079C 3348 nt2.36□□□□□ -2.03 RIP-Chip
UBP3Q01477 CTF4YPR135W 2784 nt2.36□□□□□ -2.03 RIP-Chip
UBP3Q01477 PAA1YDR071C 576 nt2.35□□□□□ -2.03
UBP3Q01477 SAS3YBL052C 2496 nt2.35□□□□□ -2.03
UBP3Q01477 CHC1YGL206C 4962 nt2.35□□□□□ -2.03
UBP3Q01477 HMI1YOL095C 2121 nt2.35□□□□□ -2.03 RIP-Chip
UBP3Q01477 YDL247W-AYDL247W-A 75 nt2.34□□□□□ -2.03
UBP3Q01477 YNL103W-AYNL103W-A 90 nt2.34□□□□□ -2.03
UBP3Q01477 YDR521WYDR521W 336 nt2.33□□□□□ -2.04
UBP3Q01477 CDC31YOR257W 486 nt2.33□□□□□ -2.04
UBP3Q01477 PTP2YOR208W 2253 nt2.33□□□□□ -2.04
UBP3Q01477 UTP22YGR090W 3714 nt2.32□□□□□ -2.04
UBP3Q01477 tL(UAA)QtL(UAA)Q 85 nt2.32□□□□□ -2.04
UBP3Q01477 MGA2YIR033W 3342 nt2.32□□□□□ -2.04 RIP-Chip
UBP3Q01477 AGC1YPR021C 2709 nt2.31□□□□□ -2.04
UBP3Q01477 PMP2YEL017C-A 132 nt2.31□□□□□ -2.04 RIP-Chip
UBP3Q01477 YJL026C-AYJL026C-A 222 nt2.31□□□□□ -2.04
UBP3Q01477 YJL052C-AYJL052C-A 120 nt2.31□□□□□ -2.04
UBP3Q01477 COX12YLR038C 252 nt2.31□□□□□ -2.04
UBP3Q01477 RPS30BYOR182C 192 nt2.31□□□□□ -2.04
UBP3Q01477 BNI1YNL271C 5862 nt2.31□□□□□ -2.04 RIP-Chip
UBP3Q01477 IRC8YJL051W 2469 nt2.31□□□□□ -2.04
UBP3Q01477 MLH3YPL164C 2148 nt2.3□□□□□ -2.04
UBP3Q01477 SBH1YER087C-B 249 nt2.3□□□□□ -2.04
UBP3Q01477 YBR099CYBR099C 384 nt2.3□□□□□ -2.04
UBP3Q01477 STH1YIL126W 4080 nt2.3□□□□□ -2.04 RIP-Chip
UBP3Q01477 YDR354C-AYDR354C-A 144 nt2.29□□□□□ -2.04
UBP3Q01477 UFD4YKL010C 4452 nt2.29□□□□□ -2.04 RIP-Chip
UBP3Q01477 DGR2YKL121W 2559 nt2.29□□□□□ -2.04
UBP3Q01477 PBY1YBR094W 2262 nt2.29□□□□□ -2.04
UBP3Q01477 YJR039WYJR039W 3366 nt2.29□□□□□ -2.04
UBP3Q01477 snR61snR61 90 nt2.28□□□□□ -2.04
UBP3Q01477 YBR206WYBR206W 324 nt2.28□□□□□ -2.04
UBP3Q01477 REV3YPL167C 4515 nt2.28□□□□□ -2.04 RIP-Chip
UBP3Q01477 FRK1YPL141C 2598 nt2.28□□□□□ -2.04
UBP3Q01477 HIR3YJR140C 4947 nt2.28□□□□□ -2.05
UBP3Q01477 OST4YDL232W 111 nt2.27□□□□□ -2.05
UBP3Q01477 ALK1YGL021W 2283 nt2.27□□□□□ -2.05
UBP3Q01477 YCR095W-AYCR095W-A 159 nt2.26□□□□□ -2.05
UBP3Q01477 YNL211CYNL211C 261 nt2.26□□□□□ -2.05
UBP3Q01477 UBP2YOR124C 3819 nt2.26□□□□□ -2.05
UBP3Q01477 YLR282CYLR282C 342 nt2.25□□□□□ -2.05
UBP3Q01477 DGR1YNL130C-A 147 nt2.25□□□□□ -2.05
UBP3Q01477 YCR038W-AYCR038W-A 126 nt2.24□□□□□ -2.05
UBP3Q01477 TMA7YLR262C-A 195 nt2.24□□□□□ -2.05
UBP3Q01477 TBS1YBR150C 3285 nt2.24□□□□□ -2.05 RIP-Chip
UBP3Q01477 MYO4YAL029C 4416 nt2.24□□□□□ -2.05 RIP-Chip
UBP3Q01477 YOR343W-BYOR343W-B 5313 nt2.23□□□□□ -2.05
UBP3Q01477 YIL002W-AYIL002W-A 210 nt2.22□□□□□ -2.05
UBP3Q01477 YNL067W-BYNL067W-B 141 nt2.22□□□□□ -2.05
UBP3Q01477 YGR109W-BYGR109W-B 4644 nt2.22□□□□□ -2.05
UBP3Q01477 HSL1YKL101W 4557 nt2.22□□□□□ -2.05
Retrieved 100 of 7,029 protein–RNA pairs in 16.4 ms