Protein–RNA interactions for Protein: P48380

RFX3, Transcription factor RFX3, humanhuman

Predictions only

Length 749 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
RFX3P48380 PRKCI-201ENST00000295797 4950 ntAPPRIS P1 TSL 1 (best) BASIC18.82■□□□□ 0.6
RFX3P48380 PITPNB-205ENST00000455418 2963 ntAPPRIS ALT1 TSL 5 BASIC18.82■□□□□ 0.6
RFX3P48380 ME3-202ENST00000393324 2240 ntAPPRIS P1 TSL 1 (best) BASIC18.82■□□□□ 0.6
RFX3P48380 PNLIPRP2-204ENST00000591655 1456 ntAPPRIS ALT1 TSL 5 BASIC18.82■□□□□ 0.6
RFX3P48380 RANBP10-201ENST00000317506 5341 ntAPPRIS P2 TSL 1 (best) BASIC18.82■□□□□ 0.6
RFX3P48380 RANBP10-209ENST00000630626 5305 ntAPPRIS ALT2 TSL 5 BASIC18.82■□□□□ 0.6
RFX3P48380 MAPK9-207ENST00000452135 4815 ntAPPRIS P5 TSL 5 BASIC18.82■□□□□ 0.6
RFX3P48380 P2RY11-201ENST00000321826 1943 ntAPPRIS P1 TSL 1 (best) BASIC18.82■□□□□ 0.6
RFX3P48380 KCNMA1-278ENST00000640141 5705 ntAPPRIS ALT2 TSL 5 BASIC18.82■□□□□ 0.6
RFX3P48380 LINC01547-202ENST00000397841 2303 ntTSL 2 BASIC18.82■□□□□ 0.6
RFX3P48380 ANKIB1-201ENST00000265742 6081 ntAPPRIS P1 TSL 1 (best) BASIC18.81■□□□□ 0.6
RFX3P48380 ADRA1B-201ENST00000306675 2047 ntAPPRIS P1 TSL 1 (best) BASIC18.81■□□□□ 0.6
RFX3P48380 MREG-201ENST00000263268 1314 ntAPPRIS P1 TSL 2 BASIC18.81■□□□□ 0.6
RFX3P48380 JAKMIP1-203ENST00000409371 2420 ntTSL 1 (best) BASIC18.81■□□□□ 0.6
RFX3P48380 NECAB3-201ENST00000246190 1989 ntTSL 5 BASIC18.81■□□□□ 0.6
RFX3P48380 CDC123-201ENST00000281141 1542 ntAPPRIS P1 TSL 1 (best) BASIC18.81■□□□□ 0.6
RFX3P48380 MGAT1-204ENST00000427865 1919 ntAPPRIS P1 TSL 2 BASIC18.81■□□□□ 0.6
RFX3P48380 TRNT1-207ENST00000420393 854 ntTSL 3 BASIC18.81■□□□□ 0.6
RFX3P48380 CROCCP5-201ENST00000436658 830 ntBASIC18.81■□□□□ 0.6
RFX3P48380 ZCCHC9-204ENST00000438268 1248 ntAPPRIS P1 TSL 1 (best) BASIC18.81■□□□□ 0.6
RFX3P48380 ZNRF2P2-202ENST00000442865 590 ntTSL 4 BASIC18.81■□□□□ 0.6
RFX3P48380 AC025754.1-201ENST00000507566 407 ntTSL 3 BASIC18.81■□□□□ 0.6
RFX3P48380 PHB2-213ENST00000546111 858 ntTSL 2 BASIC18.81■□□□□ 0.6
RFX3P48380 RPS15-206ENST00000589656 473 ntAPPRIS ALT1 TSL 5 BASIC18.81■□□□□ 0.6
RFX3P48380 PET100-202ENST00000594797 719 ntAPPRIS P1 TSL 1 (best) BASIC18.81■□□□□ 0.6
RFX3P48380 AL356652.1-201ENST00000615962 565 ntBASIC18.81■□□□□ 0.6
RFX3P48380 POU5F1-209ENST00000638788 369 ntTSL 5 BASIC18.81■□□□□ 0.6
RFX3P48380 AMIGO1-202ENST00000369864 5088 ntAPPRIS P1 TSL 1 (best) BASIC18.81■□□□□ 0.6
RFX3P48380 GPR78-201ENST00000382487 1694 ntAPPRIS P1 TSL 1 (best) BASIC18.81■□□□□ 0.6
RFX3P48380 LGI3-202ENST00000424267 3114 ntTSL 1 (best) BASIC18.81■□□□□ 0.6
RFX3P48380 GABARAPL3-202ENST00000624044 1851 ntBASIC18.81■□□□□ 0.6
RFX3P48380 AHCYL1-203ENST00000393614 4313 ntTSL 2 BASIC18.81■□□□□ 0.6
RFX3P48380 AC087633.2-202ENST00000565166 1439 ntBASIC18.81■□□□□ 0.6
RFX3P48380 EPS8L1-209ENST00000588359 1407 ntTSL 5 BASIC18.81■□□□□ 0.6
RFX3P48380 NCAN-201ENST00000252575 6387 ntAPPRIS P1 TSL 1 (best) BASIC18.81■□□□□ 0.6
RFX3P48380 INTS12-206ENST00000451321 1975 ntTSL 1 (best) BASIC18.81■□□□□ 0.6
RFX3P48380 SPOCK3-217ENST00000511269 1768 ntAPPRIS P3 TSL 2 BASIC18.81■□□□□ 0.6
RFX3P48380 SMIM3-201ENST00000526627 2332 ntAPPRIS P1 TSL 1 (best) BASIC18.8■□□□□ 0.6
RFX3P48380 DET1-207ENST00000564406 2315 ntTSL 2 BASIC18.8■□□□□ 0.6
RFX3P48380 ARHGAP8-204ENST00000389774 1725 ntAPPRIS ALT2 TSL 2 BASIC18.8■□□□□ 0.6
RFX3P48380 FGF17-202ENST00000518533 1706 ntTSL 1 (best) BASIC18.8■□□□□ 0.6
RFX3P48380 MMP23B-202ENST00000378675 1309 ntTSL 1 (best) BASIC18.8■□□□□ 0.6
RFX3P48380 PKMYT1-204ENST00000440027 2061 ntTSL 2 BASIC18.8■□□□□ 0.6
RFX3P48380 NUDT4-202ENST00000415493 4839 ntAPPRIS ALT1 TSL 1 (best) BASIC18.8■□□□□ 0.6
RFX3P48380 MTHFS-201ENST00000258874 907 ntAPPRIS P1 TSL 1 (best) BASIC18.8■□□□□ 0.6
RFX3P48380 MCRIP2P1-201ENST00000394346 511 ntBASIC18.8■□□□□ 0.6
RFX3P48380 LINC01659-202ENST00000449711 917 ntTSL 3 BASIC18.8■□□□□ 0.6
RFX3P48380 ABHD14A-202ENST00000458031 1113 ntTSL 5 BASIC18.8■□□□□ 0.6
RFX3P48380 PTGER2-202ENST00000557436 643 ntTSL 3 BASIC18.8■□□□□ 0.6
RFX3P48380 AC105036.2-201ENST00000569468 176 ntBASIC18.8■□□□□ 0.6
RFX3P48380 CIRBP-211ENST00000586773 942 ntAPPRIS ALT1 TSL 2 BASIC18.8■□□□□ 0.6
RFX3P48380 AC007993.2-201ENST00000592842 521 ntTSL 4 BASIC18.8■□□□□ 0.6
RFX3P48380 OR10C1-204ENST00000622521 1039 ntBASIC18.8■□□□□ 0.6
RFX3P48380 SMG8-203ENST00000578922 2178 ntBASIC18.8■□□□□ 0.6
RFX3P48380 PCMT1-205ENST00000464889 1984 ntAPPRIS P3 TSL 1 (best) BASIC18.8■□□□□ 0.6
RFX3P48380 FOXN3-209ENST00000555353 1595 ntAPPRIS P3 TSL 1 (best) BASIC18.8■□□□□ 0.6
RFX3P48380 FAM129C-207ENST00000599124 1918 ntAPPRIS ALT2 TSL 1 (best) BASIC18.8■□□□□ 0.6
RFX3P48380 ADM-206ENST00000528655 1889 ntAPPRIS P1 TSL 1 (best) BASIC18.8■□□□□ 0.6
RFX3P48380 AL158151.1-201ENST00000372490 2047 ntTSL 2 BASIC18.79■□□□□ 0.6
RFX3P48380 FOXI1-202ENST00000449804 2011 ntTSL 1 (best) BASIC18.79■□□□□ 0.6
RFX3P48380 TTLL7-214ENST00000610996 2028 ntTSL 5 BASIC18.79■□□□□ 0.6
RFX3P48380 C7orf43-201ENST00000316937 2520 ntAPPRIS P1 TSL 1 (best) BASIC18.79■□□□□ 0.6
RFX3P48380 ADAMTS17-201ENST00000268070 6207 ntAPPRIS P1 TSL 1 (best) BASIC18.79■□□□□ 0.6
RFX3P48380 CDH5-202ENST00000539168 1672 ntTSL 2 BASIC18.79■□□□□ 0.6
RFX3P48380 VSX1-202ENST00000376709 2192 ntAPPRIS P1 TSL 1 (best) BASIC18.79■□□□□ 0.6
RFX3P48380 CDK6-202ENST00000424848 1465 ntAPPRIS P1 TSL 1 (best) BASIC18.79■□□□□ 0.6
RFX3P48380 CAPN12-201ENST00000328867 2762 ntAPPRIS P1 TSL 1 (best) BASIC18.79■□□□□ 0.6
RFX3P48380 IRX5-202ENST00000394636 2401 ntAPPRIS P3 TSL 3 BASIC18.79■□□□□ 0.6
RFX3P48380 GTF2IRD2B-208ENST00000619142 1932 ntTSL 1 (best) BASIC18.79■□□□□ 0.6
RFX3P48380 ZNF582-202ENST00000586929 2053 ntAPPRIS P1 TSL 1 (best) BASIC18.79■□□□□ 0.6
RFX3P48380 GGTLC1-201ENST00000278765 974 ntAPPRIS P1 TSL 1 (best) BASIC18.79■□□□□ 0.6
RFX3P48380 HSD17B10-202ENST00000375298 823 ntTSL 3 BASIC18.79■□□□□ 0.6
RFX3P48380 AL645608.9-201ENST00000442292 829 ntTSL 1 (best) BASIC18.79■□□□□ 0.6
RFX3P48380 WT1-AS_3.1-201ENST00000613262 234 ntBASIC18.79■□□□□ 0.6
RFX3P48380 AL050303.2-201ENST00000619798 666 ntBASIC18.79■□□□□ 0.6
RFX3P48380 KRT8P36-201ENST00000489121 1440 ntBASIC18.79■□□□□ 0.6
RFX3P48380 PDCD2-204ENST00000453163 2657 ntTSL 1 (best) BASIC18.79■□□□□ 0.6
RFX3P48380 NSMF-203ENST00000371472 1852 ntAPPRIS P3 TSL 2 BASIC18.79■□□□□ 0.6
RFX3P48380 NECAB1-201ENST00000417640 5289 ntAPPRIS P1 TSL 1 (best) BASIC18.79■□□□□ 0.6
RFX3P48380 GRTP1-203ENST00000375431 1384 ntAPPRIS P3 TSL 1 (best) BASIC18.79■□□□□ 0.6
RFX3P48380 ENTPD2-201ENST00000312665 1500 ntTSL 1 (best) BASIC18.79■□□□□ 0.6
RFX3P48380 SEC11A-201ENST00000268220 1656 ntAPPRIS P1 TSL 1 (best) BASIC18.79■□□□□ 0.6
RFX3P48380 DYNC1LI2-201ENST00000258198 4515 ntAPPRIS P1 TSL 1 (best) BASIC18.79■□□□□ 0.6
RFX3P48380 NDRG2-242ENST00000555158 2216 ntAPPRIS ALT1 TSL 1 (best) BASIC18.78■□□□□ 0.6
RFX3P48380 ZIM2-206ENST00000599935 2226 ntAPPRIS P1 TSL 5 BASIC18.78■□□□□ 0.6
RFX3P48380 GLIPR2-203ENST00000396613 1917 ntTSL 4 BASIC18.78■□□□□ 0.6
RFX3P48380 FAM167A-207ENST00000534308 1642 ntAPPRIS P1 TSL 1 (best) BASIC18.78■□□□□ 0.6
RFX3P48380 FBXW8-201ENST00000309909 2343 ntAPPRIS P1 TSL 1 (best) BASIC18.78■□□□□ 0.6
RFX3P48380 NUAK1-201ENST00000261402 6828 ntAPPRIS P1 TSL 1 (best) BASIC18.78■□□□□ 0.6
RFX3P48380 ACVR1C-201ENST00000243349 8994 ntAPPRIS P1 TSL 1 (best) BASIC18.78■□□□□ 0.6
RFX3P48380 GLS-202ENST00000338435 4475 ntAPPRIS ALT1 TSL 1 (best) BASIC18.78■□□□□ 0.6
RFX3P48380 AC092835.1-201ENST00000425953 1850 ntAPPRIS P1 TSL 5 BASIC18.78■□□□□ 0.6
RFX3P48380 TANGO2-217ENST00000456048 2439 ntTSL 2 BASIC18.78■□□□□ 0.6
RFX3P48380 AC010980.2-201ENST00000587099 1412 ntBASIC18.78■□□□□ 0.6
RFX3P48380 PIF1-202ENST00000333425 2278 ntTSL 1 (best) BASIC18.78■□□□□ 0.6
RFX3P48380 UBE2C-201ENST00000243893 476 ntTSL 2 BASIC18.78■□□□□ 0.6
RFX3P48380 ARL5A-202ENST00000428992 747 ntTSL 2 BASIC18.78■□□□□ 0.6
RFX3P48380 AC008443.6-201ENST00000512508 500 ntTSL 4 BASIC18.78■□□□□ 0.6
RFX3P48380 AF201337.1-201ENST00000520239 748 ntBASIC18.78■□□□□ 0.6
RFX3P48380 Z97986.1-201ENST00000565879 476 ntTSL 5 BASIC18.78■□□□□ 0.6
Retrieved 100 of 98,524 protein–RNA pairs in 64.2 ms