Protein–RNA interactions for Protein: P25940

COL5A3, Collagen alpha-3(V) chain, humanhuman

Predicted RBP Predictions only

Length 1,745 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL5A3P25940 SLC25A3-211ENST00000548847 1369 ntTSL 5 BASIC25.53■■□□□ 1.68
COL5A3P25940 WBP2-213ENST00000590221 1745 ntAPPRIS ALT1 TSL 3 BASIC25.53■■□□□ 1.68
COL5A3P25940 LGALS12-203ENST00000394618 1618 ntAPPRIS P3 TSL 1 (best) BASIC25.53■■□□□ 1.68
COL5A3P25940 BTBD7-205ENST00000554565 2697 ntTSL 1 (best) BASIC25.53■■□□□ 1.68
COL5A3P25940 CCND3-202ENST00000372988 2133 ntTSL 1 (best) BASIC25.53■■□□□ 1.68
COL5A3P25940 ZNF444-201ENST00000337080 2042 ntAPPRIS P3 TSL 1 (best) BASIC25.53■■□□□ 1.68
COL5A3P25940 CBLC-201ENST00000270279 1579 ntAPPRIS P1 TSL 1 (best) BASIC25.53■■□□□ 1.68
COL5A3P25940 PRR31-201ENST00000371629 978 ntTSL 2 BASIC25.52■■□□□ 1.68
COL5A3P25940 GDAP1L1-202ENST00000372952 722 ntTSL 5 BASIC25.52■■□□□ 1.68
COL5A3P25940 AL133410.2-201ENST00000425499 696 ntTSL 5 BASIC25.52■■□□□ 1.68
COL5A3P25940 CENPX-206ENST00000580435 710 ntTSL 1 (best) BASIC25.52■■□□□ 1.68
COL5A3P25940 Z98882.1-201ENST00000622160 2253 ntBASIC25.52■■□□□ 1.68
COL5A3P25940 RBKS-201ENST00000302188 1973 ntAPPRIS P1 TSL 1 (best) BASIC25.52■■□□□ 1.68
COL5A3P25940 PLPP5-203ENST00000424479 2130 ntAPPRIS P1 TSL 1 (best) BASIC25.52■■□□□ 1.68
COL5A3P25940 FAM129C-207ENST00000599124 1918 ntAPPRIS ALT2 TSL 1 (best) BASIC25.52■■□□□ 1.68
COL5A3P25940 NDUFB10-201ENST00000268668 705 ntAPPRIS P1 TSL 1 (best) BASIC25.51■■□□□ 1.68
COL5A3P25940 CHCHD6-201ENST00000290913 1006 ntAPPRIS P2 TSL 1 (best) BASIC25.51■■□□□ 1.68
COL5A3P25940 COMMD1-201ENST00000311832 911 ntAPPRIS P1 TSL 1 (best) BASIC25.51■■□□□ 1.68
COL5A3P25940 FGF8-202ENST00000344255 707 ntTSL 1 (best) BASIC25.51■■□□□ 1.68
COL5A3P25940 RMI2-205ENST00000576027 818 ntTSL 2 BASIC25.51■■□□□ 1.68
COL5A3P25940 GEMIN7-203ENST00000591607 848 ntAPPRIS P1 TSL 3 BASIC25.51■■□□□ 1.68
COL5A3P25940 RAB34-203ENST00000395243 1597 ntTSL 1 (best) BASIC25.51■■□□□ 1.67
COL5A3P25940 NTMT1-209ENST00000611055 1562 ntAPPRIS P1 TSL 3 BASIC25.51■■□□□ 1.67
COL5A3P25940 UBL5-201ENST00000358666 513 ntAPPRIS P1 TSL 1 (best) BASIC25.51■■□□□ 1.67
COL5A3P25940 FGF7P6-201ENST00000377614 1890 ntTSL 1 (best) BASIC25.51■■□□□ 1.67
COL5A3P25940 KRT8P20-201ENST00000423953 1409 ntBASIC25.51■■□□□ 1.67
COL5A3P25940 TMA16-209ENST00000513272 803 ntTSL 2 BASIC25.51■■□□□ 1.67
COL5A3P25940 BAALC-AS1-207ENST00000522856 594 ntTSL 3 BASIC25.51■■□□□ 1.67
COL5A3P25940 AC010203.1-204ENST00000548782 407 ntBASIC25.51■■□□□ 1.67
COL5A3P25940 ANKRD54-211ENST00000609454 825 ntTSL 3 BASIC25.51■■□□□ 1.67
COL5A3P25940 BX664615.2-202ENST00000639056 1888 ntTSL 1 (best) BASIC25.51■■□□□ 1.67
COL5A3P25940 CCDC154-201ENST00000389176 2212 ntAPPRIS P5 TSL 5 BASIC25.51■■□□□ 1.67
COL5A3P25940 NAT6-201ENST00000354862 1330 ntAPPRIS P3 TSL 1 (best) BASIC25.51■■□□□ 1.67
COL5A3P25940 RNASEH2C-203ENST00000528220 1337 ntTSL 2 BASIC25.51■■□□□ 1.67
COL5A3P25940 KAT5-201ENST00000341318 2296 ntTSL 1 (best) BASIC25.5■■□□□ 1.67
COL5A3P25940 GPR20-201ENST00000377741 1515 ntAPPRIS P1 TSL 3 BASIC25.5■■□□□ 1.67
COL5A3P25940 BSCL2-207ENST00000407022 1516 ntAPPRIS P3 TSL 1 (best) BASIC25.5■■□□□ 1.67
COL5A3P25940 DOCK5-208ENST00000481100 2166 ntTSL 1 (best) BASIC25.5■■□□□ 1.67
COL5A3P25940 APIP-201ENST00000395787 1366 ntAPPRIS P1 TSL 1 (best) BASIC25.5■■□□□ 1.67
COL5A3P25940 AL731557.1-201ENST00000425264 744 ntTSL 3 BASIC25.5■■□□□ 1.67
COL5A3P25940 Z98884.1-201ENST00000451646 830 ntTSL 3 BASIC25.5■■□□□ 1.67
COL5A3P25940 PTP4A3-206ENST00000524028 963 ntTSL 5 BASIC25.5■■□□□ 1.67
COL5A3P25940 RNF165-206ENST00000590330 1049 ntTSL 2 BASIC25.5■■□□□ 1.67
COL5A3P25940 AL031985.4-201ENST00000642138 673 ntBASIC25.5■■□□□ 1.67
COL5A3P25940 HOXD12-202ENST00000406506 1318 ntAPPRIS P1 TSL 3 BASIC25.5■■□□□ 1.67
COL5A3P25940 CAB39-203ENST00000410084 1324 ntAPPRIS P1 TSL 1 (best) BASIC25.5■■□□□ 1.67
COL5A3P25940 ACSF2-207ENST00000504392 1881 ntTSL 2 BASIC25.5■■□□□ 1.67
COL5A3P25940 SOX15-201ENST00000250055 1396 ntAPPRIS P1 TSL 1 (best) BASIC25.5■■□□□ 1.67
COL5A3P25940 TPRN-202ENST00000409012 2718 ntAPPRIS P2 TSL 1 (best) BASIC25.49■■□□□ 1.67
COL5A3P25940 GATS-205ENST00000436886 2726 ntAPPRIS P1 TSL 1 (best) BASIC25.49■■□□□ 1.67
COL5A3P25940 ARMC10P1-201ENST00000313754 855 ntBASIC25.49■■□□□ 1.67
COL5A3P25940 RXFP4-201ENST00000368318 1240 ntAPPRIS P1 BASIC25.49■■□□□ 1.67
COL5A3P25940 AC016065.1-203ENST00000523225 1017 ntTSL 3 BASIC25.49■■□□□ 1.67
COL5A3P25940 WWOX-216ENST00000569818 525 ntBASIC25.49■■□□□ 1.67
COL5A3P25940 NTF6B-201ENST00000591913 560 ntBASIC25.49■■□□□ 1.67
COL5A3P25940 HEMK1-206ENST00000455834 1499 ntAPPRIS P1 TSL 5 BASIC25.49■■□□□ 1.67
COL5A3P25940 MATK-215ENST00000619596 1740 ntAPPRIS P4 TSL 2 BASIC25.49■■□□□ 1.67
COL5A3P25940 TRIM74-201ENST00000285805 1350 ntAPPRIS P2 TSL 1 (best) BASIC25.49■■□□□ 1.67
COL5A3P25940 TRIM73-201ENST00000323819 1358 ntAPPRIS P2 TSL 1 (best) BASIC25.49■■□□□ 1.67
COL5A3P25940 COL8A2-203ENST00000481785 2036 ntTSL 1 (best) BASIC25.49■■□□□ 1.67
COL5A3P25940 FAM69B-202ENST00000371692 1668 ntAPPRIS P1 TSL 1 (best) BASIC25.49■■□□□ 1.67
COL5A3P25940 BABAM1-208ENST00000598188 1470 ntAPPRIS P3 TSL 1 (best) BASIC25.49■■□□□ 1.67
COL5A3P25940 HES7-201ENST00000317814 678 ntAPPRIS P3 TSL 1 (best) BASIC25.49■■□□□ 1.67
COL5A3P25940 FAM212A-201ENST00000333323 1040 ntAPPRIS P1 TSL 1 (best) BASIC25.49■■□□□ 1.67
COL5A3P25940 SELENOF-202ENST00000370554 1220 ntTSL 1 (best) BASIC25.49■■□□□ 1.67
COL5A3P25940 CALM3-202ENST00000391918 702 ntTSL 2 BASIC25.49■■□□□ 1.67
COL5A3P25940 NFU1-202ENST00000394305 1058 ntTSL 5 BASIC25.49■■□□□ 1.67
COL5A3P25940 VSIG2-202ENST00000403470 1191 ntTSL 2 BASIC25.49■■□□□ 1.67
COL5A3P25940 SIVA1-207ENST00000556195 674 ntTSL 3 BASIC25.49■■□□□ 1.67
COL5A3P25940 C19orf25-206ENST00000588849 1472 ntTSL 5 BASIC25.48■■□□□ 1.67
COL5A3P25940 AP001922.1-201ENST00000499390 1504 ntTSL 1 (best) BASIC25.48■■□□□ 1.67
COL5A3P25940 ST3GAL4-204ENST00000444328 1812 ntAPPRIS ALT1 TSL 5 BASIC25.48■■□□□ 1.67
COL5A3P25940 PPP1R14BP5-201ENST00000440334 435 ntBASIC25.48■■□□□ 1.67
COL5A3P25940 ELOVL2-AS1-202ENST00000456616 903 ntTSL 1 (best) BASIC25.48■■□□□ 1.67
COL5A3P25940 B3GAT3P1-201ENST00000471720 806 ntBASIC25.48■■□□□ 1.67
COL5A3P25940 REPIN1-210ENST00000482680 1029 ntTSL 2 BASIC25.48■■□□□ 1.67
COL5A3P25940 AC022616.7-201ENST00000525383 220 ntBASIC25.48■■□□□ 1.67
COL5A3P25940 SH2B2-202ENST00000536178 2113 ntAPPRIS P1 TSL 1 (best) BASIC25.48■■□□□ 1.67
COL5A3P25940 FAM213A-202ENST00000372185 1723 ntTSL 2 BASIC25.47■■□□□ 1.67
COL5A3P25940 GPRC5C-204ENST00000392629 1419 ntAPPRIS ALT2 TSL 1 (best) BASIC25.47■■□□□ 1.67
COL5A3P25940 RABEPK-204ENST00000394125 1466 ntAPPRIS P1 TSL 1 (best) BASIC25.47■■□□□ 1.67
COL5A3P25940 HS2ST1-202ENST00000370551 1585 ntTSL 1 (best) BASIC25.47■■□□□ 1.67
COL5A3P25940 ST8SIA6-201ENST00000377602 2276 ntAPPRIS P1 TSL 1 (best) BASIC25.47■■□□□ 1.67
COL5A3P25940 ATPAF2-206ENST00000474627 1564 ntAPPRIS P1 TSL 1 (best) BASIC25.47■■□□□ 1.67
COL5A3P25940 LSR-203ENST00000360798 1963 ntTSL 2 BASIC25.47■■□□□ 1.67
COL5A3P25940 NDUFS6-201ENST00000274137 1082 ntAPPRIS P1 TSL 1 (best) BASIC25.47■■□□□ 1.67
COL5A3P25940 COX7A1-201ENST00000292907 762 ntAPPRIS P1 TSL 1 (best) BASIC25.47■■□□□ 1.67
COL5A3P25940 PRICKLE4-202ENST00000394260 1035 ntAPPRIS ALT2 TSL 2 BASIC25.47■■□□□ 1.67
COL5A3P25940 PRICKLE4-203ENST00000394263 1155 ntAPPRIS P2 TSL 5 BASIC25.47■■□□□ 1.67
COL5A3P25940 IKBKB-210ENST00000518983 447 ntTSL 2 BASIC25.47■■□□□ 1.67
COL5A3P25940 AL590326.2-201ENST00000625139 305 ntBASIC25.47■■□□□ 1.67
COL5A3P25940 ST3GAL3-205ENST00000347631 1324 ntTSL 5 BASIC25.47■■□□□ 1.67
COL5A3P25940 CLN6-201ENST00000249806 2243 ntAPPRIS P1 TSL 1 (best) BASIC25.47■■□□□ 1.67
COL5A3P25940 PODNL1-203ENST00000538371 1826 ntAPPRIS ALT2 TSL 2 BASIC25.47■■□□□ 1.67
COL5A3P25940 Z83844.2-201ENST00000456099 1945 ntTSL 2 BASIC25.47■■□□□ 1.67
COL5A3P25940 DMPK-220ENST00000618091 2503 ntTSL 1 (best) BASIC25.47■■□□□ 1.67
COL5A3P25940 GBX2-201ENST00000306318 2123 ntAPPRIS P1 TSL 1 (best) BASIC25.46■■□□□ 1.67
COL5A3P25940 CHN1-203ENST00000409156 1761 ntTSL 2 BASIC25.46■■□□□ 1.67
COL5A3P25940 TSPO2-202ENST00000373161 958 ntAPPRIS P1 TSL 1 (best) BASIC25.46■■□□□ 1.67
COL5A3P25940 AC007161.3-201ENST00000469183 637 ntTSL 5 BASIC25.46■■□□□ 1.67
Retrieved 100 of 98,524 protein–RNA pairs in 15 ms