Protein–RNA interactions for Protein: P16989

YBX3, Y-box-binding protein 3, humanhuman

Known RBP eCLIP

Length 372 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
YBX3P16989 SNU13-205ENST00000463675 786 ntTSL 319.72■□□□□ 0.756e-12■■■□□ 16
YBX3P16989 RPL36-201ENST00000347512 707 ntAPPRIS P1 TSL 1 (best) BASIC23.82■■□□□ 1.49e-44■■■□□ 16
YBX3P16989 RPL36-203ENST00000577222 874 ntAPPRIS P1 TSL 5 BASIC19.76■□□□□ 0.759e-44■■■□□ 16
YBX3P16989 RPL36-204ENST00000579446 452 ntTSL 2 BASIC15.09■□□□□ 0.019e-44■■■□□ 16
YBX3P16989 RPL36-205ENST00000579649 449 ntAPPRIS P1 TSL 5 BASIC13.08□□□□□ -0.329e-44■■■□□ 16
YBX3P16989 BRAP-201ENST00000327551 1947 ntTSL 1 (best) BASIC18.34■□□□□ 0.533e-9■■■□□ 16
YBX3P16989 BRAP-202ENST00000419234 4026 ntAPPRIS P1 TSL 1 (best) BASIC13.5□□□□□ -0.253e-9■■■□□ 16
YBX3P16989 KIF1B-212ENST00000622724 8588 ntTSL 1 (best) BASIC10.26□□□□□ -0.776e-7■■■□□ 16
YBX3P16989 KIF1B-201ENST00000263934 6816 ntAPPRIS P1 TSL 1 (best) BASIC9.18□□□□□ -0.943e-7■■■□□ 16
YBX3P16989 KIF1B-211ENST00000620295 8624 ntTSL 1 (best) BASIC8.84□□□□□ -0.996e-7■■■□□ 16
YBX3P16989 BRAP-203ENST00000547043 1543 ntTSL 38.66□□□□□ -1.023e-9■■■□□ 16
YBX3P16989 KIF1B-202ENST00000377081 8746 ntTSL 1 (best) BASIC8.44□□□□□ -1.066e-7■■■□□ 16
YBX3P16989 SDHB-206ENST00000485092 636 ntTSL 27.69□□□□□ -1.183e-9■■■□□ 16
YBX3P16989 KIF1B-204ENST00000377086 10669 ntTSL 1 (best) BASIC6.4□□□□□ -1.386e-7■■■□□ 16
YBX3P16989 SDHB-204ENST00000475049 397 ntTSL 35.77□□□□□ -1.493e-9■■■□□ 16
YBX3P16989 CTBP1-205ENST00000504092 920 ntTSL 525.89■■□□□ 1.743e-9■■■□□ 15.9
YBX3P16989 CTBP1-201ENST00000290921 2297 ntTSL 1 (best) BASIC25.51■■□□□ 1.673e-9■■■□□ 15.9
YBX3P16989 CTBP1-208ENST00000506180 843 ntTSL 524.89■■□□□ 1.583e-9■■■□□ 15.9
YBX3P16989 CTBP1-203ENST00000382952 2467 ntAPPRIS P1 TSL 1 (best) BASIC23.23■■□□□ 1.313e-9■■■□□ 15.9
YBX3P16989 CTBP1-216ENST00000514669 809 ntTSL 321.59■■□□□ 1.053e-9■■■□□ 15.9
YBX3P16989 CTBP1-207ENST00000505826 657 ntTSL 521.59■■□□□ 1.053e-9■■■□□ 15.9
YBX3P16989 CTBP1-210ENST00000510739 774 ntTSL 321.43■■□□□ 1.023e-9■■■□□ 15.9
YBX3P16989 CTBP1-213ENST00000514210 856 ntTSL 220.13■□□□□ 0.813e-9■■■□□ 15.9
YBX3P16989 CTBP1-206ENST00000504784 418 ntTSL 318.36■□□□□ 0.533e-9■■■□□ 15.9
YBX3P16989 POLR2C-204ENST00000563115 1062 ntTSL 223.99■■□□□ 1.431e-6■■■□□ 15.9
YBX3P16989 POLR2C-201ENST00000219252 2057 ntAPPRIS P1 TSL 1 (best) BASIC19.82■□□□□ 0.761e-6■■■□□ 15.9
YBX3P16989 POLR2C-203ENST00000562953 806 ntTSL 217.93■□□□□ 0.461e-6■■■□□ 15.9
YBX3P16989 POLR2C-207ENST00000564651 720 ntTSL 217.23■□□□□ 0.351e-6■■■□□ 15.9
YBX3P16989 POLR2C-208ENST00000567982 1135 ntTSL 214.66□□□□□ -0.061e-6■■■□□ 15.9
YBX3P16989 AC245297.1-201ENST00000313342 933 ntBASIC16.22■□□□□ 0.192e-7■■■□□ 15.9
YBX3P16989 NOS3-208ENST00000475454 366 ntTSL 518.93■□□□□ 0.625e-9■■■□□ 15.9
YBX3P16989 NOS3-205ENST00000468293 737 ntTSL 217.19■□□□□ 0.345e-9■■■□□ 15.9
YBX3P16989 ZNF562-202ENST00000453372 2111 ntAPPRIS P3 TSL 3 BASIC7.14□□□□□ -1.271e-7■■■□□ 15.9
YBX3P16989 ZNF562-201ENST00000293648 12380 ntTSL 2 BASIC5.06□□□□□ -1.61e-7■■■□□ 15.9
YBX3P16989 PRKAG1-212ENST00000550125 725 ntTSL 510.54□□□□□ -0.721e-7■■■□□ 15.9
YBX3P16989 PRKAG1-220ENST00000552793 816 ntTSL 25.69□□□□□ -1.51e-7■■■□□ 15.9
YBX3P16989 PRKAG1-210ENST00000548950 663 ntTSL 54.88□□□□□ -1.631e-7■■■□□ 15.9
YBX3P16989 CANT1-214ENST00000592228 1546 ntTSL 518.68■□□□□ 0.582e-6■■■□□ 15.9
YBX3P16989 CANT1-201ENST00000302345 3534 ntAPPRIS P1 TSL 2 BASIC13.66□□□□□ -0.222e-6■■■□□ 15.9
YBX3P16989 CANT1-216ENST00000620915 3337 ntAPPRIS P1 TSL 5 BASIC11.6□□□□□ -0.552e-6■■■□□ 15.9
YBX3P16989 CANT1-202ENST00000392446 3252 ntAPPRIS P1 TSL 1 (best) BASIC11.54□□□□□ -0.562e-6■■■□□ 15.9
YBX3P16989 AC104581.3-201ENST00000573621 348 ntAPPRIS P1 TSL 5 BASIC8.76□□□□□ -1.014e-6■■■□□ 15.9
YBX3P16989 EXOSC8-209ENST00000489088 745 ntTSL 325.96■■□□□ 1.755e-8■■■□□ 15.9
YBX3P16989 EXOSC8-202ENST00000389704 1198 ntAPPRIS P1 TSL 1 (best) BASIC22.6■■□□□ 1.215e-8■■■□□ 15.9
YBX3P16989 EXOSC8-205ENST00000474661 738 ntTSL 511.86□□□□□ -0.515e-8■■■□□ 15.9
YBX3P16989 EXOSC8-208ENST00000488779 630 ntTSL 511.86□□□□□ -0.515e-8■■■□□ 15.9
YBX3P16989 EXOSC8-210ENST00000490537 2423 ntTSL 1 (best)10.35□□□□□ -0.755e-8■■■□□ 15.9
YBX3P16989 EXOSC8-207ENST00000488108 497 ntTSL 48.41□□□□□ -1.065e-8■■■□□ 15.9
YBX3P16989 EXOSC8-203ENST00000464235 614 ntTSL 37.86□□□□□ -1.155e-8■■■□□ 15.9
YBX3P16989 EXOSC8-201ENST00000239893 694 ntTSL 57.34□□□□□ -1.235e-8■■■□□ 15.9
YBX3P16989 EXOSC8-204ENST00000470423 208 ntTSL 51.41□□□□□ -2.185e-8■■■□□ 15.9
YBX3P16989 DEAF1-205ENST00000526790 498 ntTSL 217.78■□□□□ 0.441e-6■■■□□ 15.9
YBX3P16989 AGO2-202ENST00000517293 422 ntTSL 310.37□□□□□ -0.758e-7■■■□□ 15.9
YBX3P16989 NT5DC2-209ENST00000478091 590 ntTSL 324.69■■□□□ 1.543e-6■■■□□ 15.9
YBX3P16989 ATP6AP2-206ENST00000486558 832 ntTSL 523.34■■□□□ 1.333e-9■■■□□ 15.9
YBX3P16989 ATP6AP2-207ENST00000487051 1603 ntTSL 222.37■■□□□ 1.173e-9■■■□□ 15.9
YBX3P16989 NT5DC2-206ENST00000466112 887 ntTSL 222.05■■□□□ 1.123e-6■■■□□ 15.9
YBX3P16989 ATP6AP2-220ENST00000636970 1187 ntAPPRIS ALT2 TSL 5 BASIC21.89■■□□□ 1.093e-9■■■□□ 15.9
YBX3P16989 ATP6AP2-225ENST00000637482 1648 ntAPPRIS ALT2 TSL 5 BASIC20.46■□□□□ 0.873e-9■■■□□ 15.9
YBX3P16989 ATP6AP2-214ENST00000636287 1904 ntAPPRIS ALT2 TSL 5 BASIC20.41■□□□□ 0.863e-9■■■□□ 15.9
YBX3P16989 ATP6AP2-224ENST00000637327 1929 ntAPPRIS ALT2 TSL 2 BASIC20.35■□□□□ 0.853e-9■■■□□ 15.9
YBX3P16989 ATP6AP2-233ENST00000638153 1303 ntAPPRIS ALT2 TSL 5 BASIC20.06■□□□□ 0.83e-9■■■□□ 15.9
YBX3P16989 ATP6AP2-218ENST00000636639 2125 ntTSL 1 (best)19.73■□□□□ 0.753e-9■■■□□ 15.9
YBX3P16989 ATP6AP2-211ENST00000636196 1403 ntAPPRIS ALT2 TSL 5 BASIC19.24■□□□□ 0.673e-9■■■□□ 15.9
YBX3P16989 ATP6AP2-215ENST00000636409 1962 ntAPPRIS ALT2 TSL 2 BASIC18.79■□□□□ 0.63e-9■■■□□ 15.9
YBX3P16989 ATP6AP2-226ENST00000637526 1862 ntAPPRIS ALT2 TSL 5 BASIC18.63■□□□□ 0.573e-9■■■□□ 15.9
YBX3P16989 ATP6AP2-216ENST00000636574 2027 ntTSL 518.49■□□□□ 0.553e-9■■■□□ 15.9
YBX3P16989 ATP6AP2-201ENST00000378438 2022 ntAPPRIS ALT2 TSL 5 BASIC18.47■□□□□ 0.553e-9■■■□□ 15.9
YBX3P16989 ATP6AP2-213ENST00000636251 1877 ntAPPRIS ALT2 TSL 5 BASIC18.37■□□□□ 0.533e-9■■■□□ 15.9
YBX3P16989 ATP6AP2-219ENST00000636787 2012 ntTSL 517.93■□□□□ 0.463e-9■■■□□ 15.9
YBX3P16989 ATP6AP2-209ENST00000635774 1995 ntTSL 517.73■□□□□ 0.433e-9■■■□□ 15.9
YBX3P16989 ATP6AP2-208ENST00000635734 1851 ntTSL 517.27■□□□□ 0.363e-9■■■□□ 15.9
YBX3P16989 ATP6AP2-217ENST00000636580 2337 ntAPPRIS P2 TSL 1 (best) BASIC17.19■□□□□ 0.343e-9■■■□□ 15.9
YBX3P16989 ATP6AP2-202ENST00000423649 1093 ntAPPRIS ALT2 TSL 2 BASIC16.24■□□□□ 0.193e-9■■■□□ 15.9
YBX3P16989 PUM1-215ENST00000525948 1103 ntTSL 314.76□□□□□ -0.052e-13■■■□□ 15.9
YBX3P16989 CMSS1-205ENST00000489081 1056 ntTSL 2 BASIC13.73□□□□□ -0.213e-9■■■□□ 15.9
YBX3P16989 PUM1-213ENST00000524516 561 ntTSL 212.58□□□□□ -0.42e-13■■■□□ 15.9
YBX3P16989 PUM1-209ENST00000480602 906 ntTSL 511.66□□□□□ -0.542e-13■■■□□ 15.9
YBX3P16989 ATP6AP2-230ENST00000637954 3593 ntTSL 211.58□□□□□ -0.563e-9■■■□□ 15.9
YBX3P16989 ATP6AP2-204ENST00000447485 1254 ntTSL 5 BASIC10.75□□□□□ -0.693e-9■■■□□ 15.9
YBX3P16989 CMSS1-201ENST00000421999 4330 ntAPPRIS P1 TSL 1 (best) BASIC10.58□□□□□ -0.723e-9■■■□□ 15.9
YBX3P16989 ATP6AP2-231ENST00000637955 1084 ntTSL 59.56□□□□□ -0.883e-9■■■□□ 15.9
YBX3P16989 PUM1-218ENST00000526215 586 ntTSL 29.22□□□□□ -0.932e-13■■■□□ 15.9
YBX3P16989 ATP6AP2-210ENST00000635829 2479 ntTSL 58.6□□□□□ -1.033e-9■■■□□ 15.9
YBX3P16989 PUM1-222ENST00000531867 549 ntTSL 48.28□□□□□ -1.082e-13■■■□□ 15.9
YBX3P16989 ATP6AP2-203ENST00000436783 554 ntTSL 57.7□□□□□ -1.183e-9■■■□□ 15.9
YBX3P16989 ATP6AP2-227ENST00000637614 621 ntAPPRIS ALT2 TSL 56.83□□□□□ -1.323e-9■■■□□ 15.9
YBX3P16989 CMSS1-209ENST00000497345 538 ntTSL 35.55□□□□□ -1.523e-9■■■□□ 15.9
YBX3P16989 CMSS1-207ENST00000494412 477 ntTSL 25.41□□□□□ -1.543e-9■■■□□ 15.9
YBX3P16989 Y_RNA.657-201ENST00000515983 102 ntBASIC-1.01□□□□□ -2.573e-9■■■□□ 15.9
YBX3P16989 CKB-206ENST00000553994 746 ntTSL 237.85■■■■□ 3.654e-9■■■□□ 15.9
YBX3P16989 CKB-214ENST00000555770 816 ntTSL 436.95■■■■□ 3.514e-9■■■□□ 15.9
YBX3P16989 CKB-213ENST00000555659 755 ntTSL 226.74■■□□□ 1.874e-9■■■□□ 15.9
YBX3P16989 CKB-209ENST00000554705 803 ntTSL 226.74■■□□□ 1.874e-9■■■□□ 15.9
YBX3P16989 CKB-216ENST00000557530 523 ntTSL 416.66■□□□□ 0.264e-9■■■□□ 15.9
YBX3P16989 RGS10-204ENST00000469575 316 ntTSL 34.62□□□□□ -1.675e-8■■■□□ 15.9
YBX3P16989 NCAPG2-207ENST00000472591 554 ntTSL 415.09■□□□□ 0.012e-6■■■□□ 15.9
YBX3P16989 RNF213-220ENST00000582970 21055 ntAPPRIS P2 TSL 1 (best) BASIC7.26□□□□□ -1.252e-6■■■□□ 15.9
YBX3P16989 RNF213-204ENST00000508628 17730 ntAPPRIS ALT2 TSL 5 BASIC5.56□□□□□ -1.522e-6■■■□□ 15.9
YBX3P16989 MYL6B-202ENST00000548548 887 ntTSL 220■□□□□ 0.791e-6■■■□□ 15.9
Retrieved 100 of 29,075 protein–RNA pairs in 677.7 ms