Protein–RNA interactions for Protein: P01375

TNF, Tumor necrosis factor, humanhuman

Predictions only

Length 233 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TNFP01375 INPP1-202ENST00000392329 2162 ntAPPRIS P1 TSL 5 BASIC19.66■□□□□ 0.74
TNFP01375 EGFL7-201ENST00000308874 1747 ntAPPRIS P1 TSL 1 (best) BASIC19.66■□□□□ 0.74
TNFP01375 HAS3-201ENST00000219322 1163 ntTSL 1 (best) BASIC19.66■□□□□ 0.74
TNFP01375 TMEM243-201ENST00000257637 1063 ntAPPRIS P1 TSL 1 (best) BASIC19.66■□□□□ 0.74
TNFP01375 MRPS24-201ENST00000317534 707 ntAPPRIS P1 TSL 1 (best) BASIC19.66■□□□□ 0.74
TNFP01375 NKAIN4-201ENST00000370307 793 ntTSL 5 BASIC19.66■□□□□ 0.74
TNFP01375 ELAVL3-202ENST00000438662 1223 ntAPPRIS ALT1 TSL 5 BASIC19.66■□□□□ 0.74
TNFP01375 RARRES1-204ENST00000479756 839 ntTSL 1 (best) BASIC19.66■□□□□ 0.74
TNFP01375 TMEM72-203ENST00000544540 1018 ntTSL 1 (best) BASIC19.66■□□□□ 0.74
TNFP01375 CORO1B-210ENST00000627576 960 ntTSL 5 BASIC19.66■□□□□ 0.74
TNFP01375 CABP2-204ENST00000636477 941 ntTSL 5 BASIC19.66■□□□□ 0.74
TNFP01375 AC007225.1-201ENST00000566331 1836 ntBASIC19.66■□□□□ 0.74
TNFP01375 C20orf27-201ENST00000217195 1302 ntTSL 2 BASIC19.66■□□□□ 0.74
TNFP01375 HAUS4-204ENST00000490506 1447 ntTSL 1 (best) BASIC19.66■□□□□ 0.74
TNFP01375 WDR45-207ENST00000376372 1639 ntAPPRIS P1 TSL 1 (best) BASIC19.65■□□□□ 0.74
TNFP01375 PTBP1P-201ENST00000554374 1601 ntBASIC19.65■□□□□ 0.74
TNFP01375 GORAB-201ENST00000367762 1699 ntTSL 1 (best) BASIC19.65■□□□□ 0.74
TNFP01375 VGF-202ENST00000445482 2477 ntAPPRIS P1 TSL 5 BASIC19.65■□□□□ 0.74
TNFP01375 UBE2Q1-201ENST00000292211 3210 ntAPPRIS P1 TSL 1 (best) BASIC19.65■□□□□ 0.74
TNFP01375 AC124283.5-201ENST00000624661 1809 ntBASIC19.65■□□□□ 0.74
TNFP01375 TMEM200B-201ENST00000420504 2553 ntAPPRIS P1 TSL 1 (best) BASIC19.65■□□□□ 0.74
TNFP01375 ZNF746-203ENST00000461958 5051 ntTSL 1 (best) BASIC19.65■□□□□ 0.74
TNFP01375 S100A14-203ENST00000368701 1080 ntAPPRIS P1 TSL 2 BASIC19.65■□□□□ 0.74
TNFP01375 CXADR-204ENST00000400166 1080 ntTSL 1 (best) BASIC19.65■□□□□ 0.74
TNFP01375 EXOSC4-202ENST00000525936 606 ntTSL 3 BASIC19.65■□□□□ 0.74
TNFP01375 HAGHL-213ENST00000564545 663 ntTSL 3 BASIC19.65■□□□□ 0.74
TNFP01375 AC097641.1-201ENST00000580671 588 ntTSL 4 BASIC19.65■□□□□ 0.74
TNFP01375 MIR4497-201ENST00000583208 89 ntBASIC19.65■□□□□ 0.74
TNFP01375 AL121906.2-201ENST00000621597 723 ntBASIC19.65■□□□□ 0.74
TNFP01375 ZNF707-222ENST00000532158 2218 ntAPPRIS P1 TSL 1 (best) BASIC19.65■□□□□ 0.74
TNFP01375 ULK2-202ENST00000395544 6010 ntAPPRIS P1 TSL 1 (best) BASIC19.65■□□□□ 0.74
TNFP01375 KRT8P17-201ENST00000453110 1448 ntBASIC19.65■□□□□ 0.74
TNFP01375 RFC2-202ENST00000352131 1576 ntTSL 1 (best) BASIC19.65■□□□□ 0.74
TNFP01375 NEUROG1-201ENST00000314744 1668 ntAPPRIS P1 BASIC19.65■□□□□ 0.74
TNFP01375 FDFT1-210ENST00000525954 1890 ntTSL 2 BASIC19.65■□□□□ 0.74
TNFP01375 RUNDC3B-207ENST00000493037 2020 ntAPPRIS ALT2 TSL 1 (best) BASIC19.64■□□□□ 0.74
TNFP01375 DACH1-201ENST00000611519 4789 ntAPPRIS ALT2 TSL 1 (best) BASIC19.64■□□□□ 0.74
TNFP01375 DNAAF3-201ENST00000391720 2169 ntAPPRIS P3 TSL 2 BASIC19.64■□□□□ 0.74
TNFP01375 UBE2H-201ENST00000355621 5151 ntAPPRIS P1 TSL 1 (best) BASIC19.64■□□□□ 0.73
TNFP01375 TSTD1-201ENST00000318289 626 ntAPPRIS P3 TSL 1 (best) BASIC19.64■□□□□ 0.73
TNFP01375 PSMG1-202ENST00000380900 907 ntTSL 1 (best) BASIC19.64■□□□□ 0.73
TNFP01375 RHOG-202ENST00000396978 1066 ntAPPRIS P1 TSL 3 BASIC19.64■□□□□ 0.73
TNFP01375 RPS2P55-201ENST00000397318 883 ntBASIC19.64■□□□□ 0.73
TNFP01375 TSPAN4-209ENST00000409543 1031 ntAPPRIS P1 TSL 5 BASIC19.64■□□□□ 0.73
TNFP01375 METTL21A-204ENST00000425132 869 ntTSL 2 BASIC19.64■□□□□ 0.73
TNFP01375 C16orf90-202ENST00000437192 907 ntAPPRIS P1 TSL 5 BASIC19.64■□□□□ 0.73
TNFP01375 LINC00894-209ENST00000458274 547 ntTSL 2 BASIC19.64■□□□□ 0.73
TNFP01375 AC107956.1-201ENST00000494359 873 ntBASIC19.64■□□□□ 0.73
TNFP01375 PNN-205ENST00000556530 601 ntTSL 2 BASIC19.64■□□□□ 0.73
TNFP01375 ISG20-210ENST00000560741 800 ntAPPRIS P1 TSL 5 BASIC19.64■□□□□ 0.73
TNFP01375 NOXO1-205ENST00000566005 1144 ntTSL 1 (best) BASIC19.64■□□□□ 0.73
TNFP01375 AP001412.1-201ENST00000608405 714 ntBASIC19.64■□□□□ 0.73
TNFP01375 FBXO28-202ENST00000424254 1334 ntTSL 1 (best) BASIC19.64■□□□□ 0.73
TNFP01375 NPAS1-201ENST00000439365 1341 ntTSL 2 BASIC19.64■□□□□ 0.73
TNFP01375 VRK2-207ENST00000440705 1676 ntAPPRIS ALT2 TSL 1 (best) BASIC19.64■□□□□ 0.73
TNFP01375 FBXL12-205ENST00000586651 1736 ntTSL 1 (best) BASIC19.64■□□□□ 0.73
TNFP01375 POU2F2-215ENST00000560398 1788 ntTSL 5 BASIC19.64■□□□□ 0.73
TNFP01375 DMRT2-203ENST00000358146 1965 ntAPPRIS P1 TSL 1 (best) BASIC19.64■□□□□ 0.73
TNFP01375 CCDC185-201ENST00000366875 2054 ntAPPRIS P1 BASIC19.64■□□□□ 0.73
TNFP01375 ILDR2-204ENST00000525740 2242 ntTSL 5 BASIC19.64■□□□□ 0.73
TNFP01375 DENND1A-201ENST00000373618 3003 ntTSL 1 (best) BASIC19.63■□□□□ 0.73
TNFP01375 SOX10-201ENST00000360880 2861 ntAPPRIS P1 TSL 1 (best) BASIC19.63■□□□□ 0.73
TNFP01375 SOX10-202ENST00000396884 2879 ntAPPRIS P1 TSL 1 (best) BASIC19.63■□□□□ 0.73
TNFP01375 KCNAB3-201ENST00000303790 2458 ntAPPRIS P1 TSL 1 (best) BASIC19.63■□□□□ 0.73
TNFP01375 P2RX5-201ENST00000225328 2309 ntAPPRIS P3 TSL 1 (best) BASIC19.63■□□□□ 0.73
TNFP01375 ATP11C-203ENST00000370557 6924 ntAPPRIS ALT2 TSL 5 BASIC19.63■□□□□ 0.73
TNFP01375 BRD9-202ENST00000467963 2156 ntAPPRIS P1 TSL 2 BASIC19.63■□□□□ 0.73
TNFP01375 PHF7-201ENST00000327906 2130 ntAPPRIS P1 TSL 1 (best) BASIC19.63■□□□□ 0.73
TNFP01375 FOXD4L3-201ENST00000342833 2039 ntAPPRIS P1 BASIC19.63■□□□□ 0.73
TNFP01375 FBXO31-207ENST00000618298 1871 ntTSL 5 BASIC19.63■□□□□ 0.73
TNFP01375 PHF20L1-214ENST00000485595 1810 ntTSL 2 BASIC19.63■□□□□ 0.73
TNFP01375 DND1-201ENST00000542735 1605 ntAPPRIS P1 TSL 1 (best) BASIC19.63■□□□□ 0.73
TNFP01375 AC110285.2-201ENST00000571724 1565 ntTSL 2 BASIC19.63■□□□□ 0.73
TNFP01375 GPRC5C-204ENST00000392629 1419 ntAPPRIS ALT2 TSL 1 (best) BASIC19.63■□□□□ 0.73
TNFP01375 AL135905.2-201ENST00000584934 1404 ntBASIC19.63■□□□□ 0.73
TNFP01375 DNTTIP1-201ENST00000372622 1290 ntAPPRIS P1 TSL 1 (best) BASIC19.63■□□□□ 0.73
TNFP01375 SMIM19-201ENST00000414154 793 ntAPPRIS P1 TSL 1 (best) BASIC19.63■□□□□ 0.73
TNFP01375 AC012618.2-201ENST00000428058 849 ntBASIC19.63■□□□□ 0.73
TNFP01375 AC068831.2-201ENST00000448987 367 ntTSL 2 BASIC19.63■□□□□ 0.73
TNFP01375 AL365295.1-202ENST00000456100 562 ntTSL 4 BASIC19.63■□□□□ 0.73
TNFP01375 UBE2K-204ENST00000503368 891 ntTSL 1 (best) BASIC19.63■□□□□ 0.73
TNFP01375 AC091564.2-201ENST00000527191 399 ntTSL 3 BASIC19.63■□□□□ 0.73
TNFP01375 ELAC1-203ENST00000588577 694 ntTSL 2 BASIC19.63■□□□□ 0.73
TNFP01375 SPAG16-202ENST00000331683 2177 ntAPPRIS P1 TSL 1 (best) BASIC19.63■□□□□ 0.73
TNFP01375 B4GALT2-204ENST00000434555 1923 ntTSL 1 (best) BASIC19.63■□□□□ 0.73
TNFP01375 FASTK-201ENST00000297532 1827 ntAPPRIS P1 TSL 1 (best) BASIC19.62■□□□□ 0.73
TNFP01375 ZNF316-201ENST00000382252 5392 ntAPPRIS P1 TSL 5 BASIC19.62■□□□□ 0.73
TNFP01375 H19-201ENST00000411754 1788 ntTSL 5 BASIC19.62■□□□□ 0.73
TNFP01375 FAM151B-201ENST00000282226 1717 ntAPPRIS P1 TSL 1 (best) BASIC19.62■□□□□ 0.73
TNFP01375 ETV7-203ENST00000373737 1488 ntAPPRIS ALT2 TSL 1 (best) BASIC19.62■□□□□ 0.73
TNFP01375 GOLGA4-208ENST00000444882 1451 ntTSL 1 (best) BASIC19.62■□□□□ 0.73
TNFP01375 SARDH-203ENST00000371868 2266 ntTSL 2 BASIC19.62■□□□□ 0.73
TNFP01375 DPF1-206ENST00000420980 2227 ntTSL 1 (best) BASIC19.62■□□□□ 0.73
TNFP01375 PPP3CC-201ENST00000240139 2189 ntAPPRIS P3 TSL 1 (best) BASIC19.62■□□□□ 0.73
TNFP01375 AC005229.4-201ENST00000610085 2198 ntBASIC19.62■□□□□ 0.73
TNFP01375 ANG-201ENST00000336811 1222 ntAPPRIS P1 TSL 1 (best) BASIC19.62■□□□□ 0.73
TNFP01375 TCEAL6-202ENST00000372774 1106 ntAPPRIS P1 TSL 1 (best) BASIC19.62■□□□□ 0.73
TNFP01375 MDFI-202ENST00000373050 809 ntTSL 2 BASIC19.62■□□□□ 0.73
TNFP01375 SNORA78-201ENST00000459373 127 ntBASIC19.62■□□□□ 0.73
TNFP01375 AC035140.1-201ENST00000507957 493 ntTSL 3 BASIC19.62■□□□□ 0.73
Retrieved 100 of 98,524 protein–RNA pairs in 7.5 ms