Protein–RNA interactions for Protein: O75351

VPS4B, Vacuolar protein sorting-associated protein 4B, humanhuman

Predictions only

Length 444 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VPS4BO75351 TNFSF11-203ENST00000398795 2199 ntAPPRIS P1 TSL 1 (best) BASIC19.64■□□□□ 0.74
VPS4BO75351 CPAMD8-202ENST00000388925 5355 ntTSL 5 BASIC19.64■□□□□ 0.74
VPS4BO75351 NAA20-201ENST00000310450 920 ntTSL 2 BASIC19.64■□□□□ 0.73
VPS4BO75351 GUK1-209ENST00000366730 937 ntAPPRIS P3 TSL 3 BASIC19.64■□□□□ 0.73
VPS4BO75351 NUDT8-202ENST00000376693 728 ntAPPRIS ALT2 TSL 2 BASIC19.64■□□□□ 0.73
VPS4BO75351 LINC01117-201ENST00000443670 699 ntTSL 5 BASIC19.64■□□□□ 0.73
VPS4BO75351 AC108693.2-201ENST00000492981 303 ntTSL 3 BASIC19.64■□□□□ 0.73
VPS4BO75351 AF201337.1-201ENST00000520239 748 ntBASIC19.64■□□□□ 0.73
VPS4BO75351 MAGIX-202ENST00000595224 1238 ntAPPRIS P2 TSL 5 BASIC19.64■□□□□ 0.73
VPS4BO75351 TOR2A-201ENST00000336067 1370 ntTSL 2 BASIC19.64■□□□□ 0.73
VPS4BO75351 TSPAN4-206ENST00000397408 1430 ntAPPRIS P1 TSL 2 BASIC19.64■□□□□ 0.73
VPS4BO75351 GNA12-201ENST00000275364 4378 ntAPPRIS P1 TSL 1 (best) BASIC19.64■□□□□ 0.73
VPS4BO75351 NAE1-201ENST00000290810 1837 ntAPPRIS P1 TSL 1 (best) BASIC19.64■□□□□ 0.73
VPS4BO75351 UBXN6-201ENST00000301281 1943 ntAPPRIS P1 TSL 1 (best) BASIC19.64■□□□□ 0.73
VPS4BO75351 P2RY11-201ENST00000321826 1943 ntAPPRIS P1 TSL 1 (best) BASIC19.64■□□□□ 0.73
VPS4BO75351 ST8SIA1-204ENST00000404299 1920 ntTSL 1 (best) BASIC19.64■□□□□ 0.73
VPS4BO75351 NEU4-205ENST00000407683 2273 ntAPPRIS P1 TSL 2 BASIC19.64■□□□□ 0.73
VPS4BO75351 TAF7-201ENST00000313368 2334 ntAPPRIS P1 BASIC19.64■□□□□ 0.73
VPS4BO75351 GALNS-201ENST00000268695 2363 ntAPPRIS P1 TSL 1 (best) BASIC19.64■□□□□ 0.73
VPS4BO75351 JMJD4-202ENST00000438896 2502 ntTSL 2 BASIC19.64■□□□□ 0.73
VPS4BO75351 ZDHHC18-202ENST00000374142 5020 ntAPPRIS P2 TSL 1 (best) BASIC19.64■□□□□ 0.73
VPS4BO75351 KDM2A-202ENST00000398645 6511 ntTSL 1 (best) BASIC19.63■□□□□ 0.73
VPS4BO75351 FBXO31-201ENST00000311635 5934 ntAPPRIS P1 TSL 1 (best) BASIC19.63■□□□□ 0.73
VPS4BO75351 KLHL29-203ENST00000486442 5287 ntAPPRIS P1 TSL 5 BASIC19.63■□□□□ 0.73
VPS4BO75351 TSPAN17-202ENST00000310032 2550 ntTSL 5 BASIC19.63■□□□□ 0.73
VPS4BO75351 ILDR2-207ENST00000529071 2566 ntAPPRIS ALT2 TSL 5 BASIC19.63■□□□□ 0.73
VPS4BO75351 KCNN2-207ENST00000610748 2091 ntTSL 3 BASIC19.63■□□□□ 0.73
VPS4BO75351 ST3GAL4-217ENST00000534083 1919 ntAPPRIS ALT1 TSL 5 BASIC19.63■□□□□ 0.73
VPS4BO75351 IL11RA-201ENST00000318041 1728 ntAPPRIS P1 TSL 1 (best) BASIC19.63■□□□□ 0.73
VPS4BO75351 MKRN1-208ENST00000474576 1661 ntTSL 5 BASIC19.63■□□□□ 0.73
VPS4BO75351 KLF1-201ENST00000264834 1592 ntAPPRIS P1 TSL 1 (best) BASIC19.63■□□□□ 0.73
VPS4BO75351 GNB4-204ENST00000468623 1360 ntAPPRIS P1 TSL 2 BASIC19.63■□□□□ 0.73
VPS4BO75351 ATP6V0A2-201ENST00000330342 6542 ntAPPRIS P1 TSL 1 (best) BASIC19.63■□□□□ 0.73
VPS4BO75351 AC099522.1-201ENST00000505955 881 ntTSL 3 BASIC19.63■□□□□ 0.73
VPS4BO75351 AC104187.1-201ENST00000607510 612 ntBASIC19.63■□□□□ 0.73
VPS4BO75351 CBLN2-201ENST00000269503 2945 ntAPPRIS P1 TSL 1 (best) BASIC19.63■□□□□ 0.73
VPS4BO75351 DOK1-201ENST00000233668 2555 ntAPPRIS P1 TSL 1 (best) BASIC19.63■□□□□ 0.73
VPS4BO75351 ENGASE-205ENST00000579016 2579 ntAPPRIS P1 TSL 1 (best) BASIC19.63■□□□□ 0.73
VPS4BO75351 MZF1-203ENST00000594234 2385 ntTSL 1 (best) BASIC19.63■□□□□ 0.73
VPS4BO75351 FBXW8-201ENST00000309909 2343 ntAPPRIS P1 TSL 1 (best) BASIC19.63■□□□□ 0.73
VPS4BO75351 LIMS2-207ENST00000409808 2315 ntAPPRIS ALT1 TSL 5 BASIC19.63■□□□□ 0.73
VPS4BO75351 RBM6-204ENST00000422955 2324 ntTSL 2 BASIC19.63■□□□□ 0.73
VPS4BO75351 CLDND1-201ENST00000341181 2161 ntAPPRIS P1 TSL 1 (best) BASIC19.63■□□□□ 0.73
VPS4BO75351 NFIL3-201ENST00000297689 2085 ntAPPRIS P1 TSL 1 (best) BASIC19.63■□□□□ 0.73
VPS4BO75351 ACBD4-204ENST00000431281 2026 ntTSL 5 BASIC19.63■□□□□ 0.73
VPS4BO75351 NSDHL-201ENST00000370274 1929 ntAPPRIS P2 TSL 1 (best) BASIC19.63■□□□□ 0.73
VPS4BO75351 TMEM51-201ENST00000376008 1931 ntAPPRIS P1 TSL 2 BASIC19.63■□□□□ 0.73
VPS4BO75351 PPP5C-202ENST00000391919 1929 ntTSL 5 BASIC19.63■□□□□ 0.73
VPS4BO75351 VRK2-207ENST00000440705 1676 ntAPPRIS ALT2 TSL 1 (best) BASIC19.62■□□□□ 0.73
VPS4BO75351 SUDS3-204ENST00000543473 4897 ntAPPRIS P1 TSL 1 (best) BASIC19.62■□□□□ 0.73
VPS4BO75351 CERS4-209ENST00000559450 1637 ntAPPRIS P1 TSL 5 BASIC19.62■□□□□ 0.73
VPS4BO75351 PNKP-214ENST00000600573 1602 ntTSL 5 BASIC19.62■□□□□ 0.73
VPS4BO75351 GABRD-213ENST00000640067 1632 ntAPPRIS ALT2 TSL 5 BASIC19.62■□□□□ 0.73
VPS4BO75351 NRXN1-226ENST00000626899 2543 ntTSL 2 BASIC19.62■□□□□ 0.73
VPS4BO75351 PLCB2-204ENST00000557821 4517 ntAPPRIS ALT1 TSL 1 (best) BASIC19.62■□□□□ 0.73
VPS4BO75351 TBCB-201ENST00000221855 1473 ntAPPRIS P1 TSL 1 (best) BASIC19.62■□□□□ 0.73
VPS4BO75351 VIL1-204ENST00000440053 1454 ntTSL 1 (best) BASIC19.62■□□□□ 0.73
VPS4BO75351 KCNQ2-201ENST00000344425 1426 ntTSL 1 (best) BASIC19.62■□□□□ 0.73
VPS4BO75351 CENPN-201ENST00000299572 1398 ntTSL 1 (best) BASIC19.62■□□□□ 0.73
VPS4BO75351 ROR1-201ENST00000371079 5832 ntAPPRIS P2 TSL 1 (best) BASIC19.62■□□□□ 0.73
VPS4BO75351 GPR35-201ENST00000319838 2249 ntAPPRIS P3 TSL 2 BASIC19.62■□□□□ 0.73
VPS4BO75351 HRASLS5-201ENST00000301790 1166 ntAPPRIS P3 TSL 1 (best) BASIC19.62■□□□□ 0.73
VPS4BO75351 ENTPD8-201ENST00000344119 2111 ntTSL 1 (best) BASIC19.62■□□□□ 0.73
VPS4BO75351 LINC01816-201ENST00000414141 662 ntTSL 1 (best) BASIC19.62■□□□□ 0.73
VPS4BO75351 POU5F1P3-201ENST00000428824 1078 ntBASIC19.62■□□□□ 0.73
VPS4BO75351 ARL5A-202ENST00000428992 747 ntTSL 2 BASIC19.62■□□□□ 0.73
VPS4BO75351 AC073210.2-201ENST00000430369 194 ntBASIC19.62■□□□□ 0.73
VPS4BO75351 RPL29-209ENST00000495383 713 ntAPPRIS P1 TSL 2 BASIC19.62■□□□□ 0.73
VPS4BO75351 AL731577.2-201ENST00000508096 555 ntTSL 2 BASIC19.62■□□□□ 0.73
VPS4BO75351 AC044860.1-203ENST00000560811 844 ntTSL 3 BASIC19.62■□□□□ 0.73
VPS4BO75351 NMRAL1-212ENST00000574425 1240 ntAPPRIS P1 TSL 2 BASIC19.62■□□□□ 0.73
VPS4BO75351 ABHD1-207ENST00000621324 1078 ntTSL 5 BASIC19.62■□□□□ 0.73
VPS4BO75351 DLGAP4-201ENST00000339266 5016 ntAPPRIS ALT2 TSL 5 BASIC19.62■□□□□ 0.73
VPS4BO75351 EYA2-210ENST00000611592 2612 ntTSL 5 BASIC19.62■□□□□ 0.73
VPS4BO75351 MYO15B-232ENST00000610510 9195 ntAPPRIS P1 TSL 5 BASIC19.62■□□□□ 0.73
VPS4BO75351 ZSWIM8-220ENST00000604524 5465 ntTSL 5 BASIC19.62■□□□□ 0.73
VPS4BO75351 RETREG2-203ENST00000430297 4618 ntAPPRIS P1 TSL 1 (best) BASIC19.62■□□□□ 0.73
VPS4BO75351 KCNS2-201ENST00000287042 5219 ntAPPRIS P1 TSL 1 (best) BASIC19.62■□□□□ 0.73
VPS4BO75351 ABHD5-205ENST00000458276 1690 ntAPPRIS P1 TSL 1 (best) BASIC19.62■□□□□ 0.73
VPS4BO75351 SLC25A46-202ENST00000447245 1575 ntTSL 2 BASIC19.61■□□□□ 0.73
VPS4BO75351 WIPI2-203ENST00000401525 2112 ntAPPRIS P1 TSL 1 (best) BASIC19.61■□□□□ 0.73
VPS4BO75351 RUFY3-203ENST00000417478 2143 ntTSL 1 (best) BASIC19.61■□□□□ 0.73
VPS4BO75351 LONRF3-202ENST00000371628 2550 ntAPPRIS P1 TSL 1 (best) BASIC19.61■□□□□ 0.73
VPS4BO75351 PLSCR3-212ENST00000576201 1965 ntAPPRIS P1 TSL 1 (best) BASIC19.61■□□□□ 0.73
VPS4BO75351 SMOC2-206ENST00000535039 1875 ntTSL 5 BASIC19.61■□□□□ 0.73
VPS4BO75351 DMRT2-205ENST00000382255 2367 ntTSL 1 (best) BASIC19.61■□□□□ 0.73
VPS4BO75351 RAC1-201ENST00000348035 2323 ntAPPRIS P1 TSL 1 (best) BASIC19.61■□□□□ 0.73
VPS4BO75351 CD2AP-201ENST00000359314 5412 ntAPPRIS P1 TSL 1 (best) BASIC19.61■□□□□ 0.73
VPS4BO75351 MRPL37-201ENST00000336230 1179 ntTSL 1 (best) BASIC19.61■□□□□ 0.73
VPS4BO75351 XXYLT1-202ENST00000356740 564 ntTSL 2 BASIC19.61■□□□□ 0.73
VPS4BO75351 LYRM9-201ENST00000379102 501 ntAPPRIS P1 TSL 2 BASIC19.61■□□□□ 0.73
VPS4BO75351 IGHV3-33-201ENST00000390615 431 ntAPPRIS P1 BASIC19.61■□□□□ 0.73
VPS4BO75351 LYRM9-206ENST00000508862 807 ntTSL 3 BASIC19.61■□□□□ 0.73
VPS4BO75351 IGHV3-30-201ENST00000603660 431 ntAPPRIS P1 BASIC19.61■□□□□ 0.73
VPS4BO75351 ITM2C-210ENST00000620962 501 ntBASIC19.61■□□□□ 0.73
VPS4BO75351 RTN1-202ENST00000342503 1703 ntAPPRIS ALT1 TSL 1 (best) BASIC19.61■□□□□ 0.73
VPS4BO75351 KCNC2-204ENST00000540018 2168 ntAPPRIS ALT2 TSL 2 BASIC19.61■□□□□ 0.73
VPS4BO75351 PHKA1-204ENST00000373545 6173 ntTSL 5 BASIC19.61■□□□□ 0.73
VPS4BO75351 P2RX2-201ENST00000343948 1494 ntAPPRIS P4 TSL 1 (best) BASIC19.6■□□□□ 0.73
VPS4BO75351 LMAN1L-201ENST00000309664 1873 ntAPPRIS P1 TSL 1 (best) BASIC19.6■□□□□ 0.73
Retrieved 100 of 98,524 protein–RNA pairs in 33.1 ms