Protein–RNA interactions for Protein: O00337

SLC28A1, Sodium/nucleoside cotransporter 1, humanhuman

Predictions only

Length 649 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SLC28A1O00337 MPRIP-203ENST00000395806 527 ntTSL 3 BASIC19.33■□□□□ 0.68
SLC28A1O00337 SPOCK2-203ENST00000412663 1284 ntTSL 5 BASIC19.33■□□□□ 0.68
SLC28A1O00337 DNAJC27-AS1-204ENST00000428614 780 ntTSL 3 BASIC19.33■□□□□ 0.68
SLC28A1O00337 PLD4-205ENST00000553861 667 ntTSL 2 BASIC19.33■□□□□ 0.68
SLC28A1O00337 IDH2-203ENST00000559482 1278 ntTSL 5 BASIC19.33■□□□□ 0.68
SLC28A1O00337 AC016405.3-201ENST00000607710 860 ntBASIC19.33■□□□□ 0.68
SLC28A1O00337 MIR6821-201ENST00000617625 74 ntBASIC19.33■□□□□ 0.68
SLC28A1O00337 RHOA-202ENST00000418115 2031 ntAPPRIS P1 TSL 1 (best) BASIC19.33■□□□□ 0.68
SLC28A1O00337 ASCL4-201ENST00000342331 2260 ntAPPRIS P1 BASIC19.33■□□□□ 0.68
SLC28A1O00337 NBL1-209ENST00000548815 1953 ntAPPRIS P3 TSL 3 BASIC19.33■□□□□ 0.68
SLC28A1O00337 IQCJ-SCHIP1-204ENST00000485419 2445 ntAPPRIS ALT2 TSL 2 BASIC19.33■□□□□ 0.68
SLC28A1O00337 BCKDK-202ENST00000287507 1907 ntTSL 1 (best) BASIC19.33■□□□□ 0.68
SLC28A1O00337 STK25-205ENST00000405883 1904 ntTSL 2 BASIC19.33■□□□□ 0.68
SLC28A1O00337 LENG9-203ENST00000611161 1916 ntAPPRIS P1 BASIC19.33■□□□□ 0.68
SLC28A1O00337 KLHL11-201ENST00000319121 2383 ntAPPRIS P1 TSL 1 (best) BASIC19.33■□□□□ 0.68
SLC28A1O00337 CASP16P-201ENST00000428155 1433 ntTSL 1 (best) BASIC19.33■□□□□ 0.68
SLC28A1O00337 EML2-220ENST00000589876 2364 ntAPPRIS ALT2 TSL 1 (best) BASIC19.33■□□□□ 0.68
SLC28A1O00337 IGFALS-201ENST00000215539 2116 ntAPPRIS P1 TSL 1 (best) BASIC19.33■□□□□ 0.68
SLC28A1O00337 DISC1-215ENST00000602281 2761 ntAPPRIS ALT2 TSL 1 (best) BASIC19.32■□□□□ 0.68
SLC28A1O00337 STX18-205ENST00000505286 1380 ntTSL 1 (best) BASIC19.32■□□□□ 0.68
SLC28A1O00337 C2orf54-201ENST00000307486 2017 ntAPPRIS ALT2 TSL 1 (best) BASIC19.32■□□□□ 0.68
SLC28A1O00337 DYNLT3-201ENST00000378578 2217 ntAPPRIS P1 TSL 1 (best) BASIC19.32■□□□□ 0.68
SLC28A1O00337 DUSP18-205ENST00000404885 1306 ntAPPRIS P1 TSL 1 (best) BASIC19.32■□□□□ 0.68
SLC28A1O00337 DMRT2-205ENST00000382255 2367 ntTSL 1 (best) BASIC19.32■□□□□ 0.68
SLC28A1O00337 PNMA8B-202ENST00000599531 5308 ntAPPRIS P1 BASIC19.32■□□□□ 0.68
SLC28A1O00337 CRLF3-201ENST00000324238 2957 ntAPPRIS P1 TSL 1 (best) BASIC19.32■□□□□ 0.68
SLC28A1O00337 DNAJC1-202ENST00000376980 2106 ntAPPRIS P1 TSL 1 (best) BASIC19.32■□□□□ 0.68
SLC28A1O00337 LTB-211ENST00000446745 853 ntTSL 1 (best) BASIC19.32■□□□□ 0.68
SLC28A1O00337 AC079305.3-201ENST00000455416 218 ntTSL 5 BASIC19.32■□□□□ 0.68
SLC28A1O00337 EDA-209ENST00000525810 843 ntTSL 1 (best) BASIC19.32■□□□□ 0.68
SLC28A1O00337 EDA-210ENST00000527388 927 ntTSL 1 (best) BASIC19.32■□□□□ 0.68
SLC28A1O00337 FRMD8-208ENST00000531296 366 ntTSL 1 (best) BASIC19.32■□□□□ 0.68
SLC28A1O00337 AC137761.2-201ENST00000561729 223 ntBASIC19.32■□□□□ 0.68
SLC28A1O00337 AC145350.3-201ENST00000569033 163 ntBASIC19.32■□□□□ 0.68
SLC28A1O00337 MMP25-AS1-204ENST00000572574 794 ntTSL 5 BASIC19.32■□□□□ 0.68
SLC28A1O00337 AC005697.1-201ENST00000582441 582 ntAPPRIS P1 TSL 4 BASIC19.32■□□□□ 0.68
SLC28A1O00337 SUDS3-204ENST00000543473 4897 ntAPPRIS P1 TSL 1 (best) BASIC19.32■□□□□ 0.68
SLC28A1O00337 PFKFB3-219ENST00000640683 2311 ntTSL 5 BASIC19.32■□□□□ 0.68
SLC28A1O00337 FAM217A-201ENST00000274673 2265 ntAPPRIS P1 TSL 1 (best) BASIC19.32■□□□□ 0.68
SLC28A1O00337 BIN2-210ENST00000615107 2255 ntAPPRIS P1 TSL 1 (best) BASIC19.32■□□□□ 0.68
SLC28A1O00337 BEST4-201ENST00000372207 2047 ntAPPRIS P1 TSL 1 (best) BASIC19.32■□□□□ 0.68
SLC28A1O00337 WNT7B-204ENST00000410089 2202 ntTSL 5 BASIC19.32■□□□□ 0.68
SLC28A1O00337 SPNS2-201ENST00000329078 3447 ntAPPRIS P1 TSL 1 (best) BASIC19.32■□□□□ 0.68
SLC28A1O00337 TNFSF11-203ENST00000398795 2199 ntAPPRIS P1 TSL 1 (best) BASIC19.32■□□□□ 0.68
SLC28A1O00337 RNF38-202ENST00000350199 5104 ntAPPRIS P1 TSL 5 BASIC19.32■□□□□ 0.68
SLC28A1O00337 SETD6-201ENST00000219315 1553 ntAPPRIS ALT2 TSL 1 (best) BASIC19.32■□□□□ 0.68
SLC28A1O00337 CLN3-240ENST00000631023 1586 ntTSL 5 BASIC19.32■□□□□ 0.68
SLC28A1O00337 SAC3D1-205ENST00000531072 1362 ntAPPRIS P1 TSL 2 BASIC19.32■□□□□ 0.68
SLC28A1O00337 CDV3-201ENST00000264993 3307 ntAPPRIS P1 TSL 1 (best) BASIC19.31■□□□□ 0.68
SLC28A1O00337 AC104581.1-201ENST00000324348 2852 ntAPPRIS P1 TSL 2 BASIC19.31■□□□□ 0.68
SLC28A1O00337 USP48-201ENST00000308271 4595 ntAPPRIS P1 TSL 1 (best) BASIC19.31■□□□□ 0.68
SLC28A1O00337 RNF135-205ENST00000535306 2098 ntTSL 1 (best) BASIC19.31■□□□□ 0.68
SLC28A1O00337 KIF26A-202ENST00000423312 5649 ntAPPRIS P2 TSL 5 BASIC19.31■□□□□ 0.68
SLC28A1O00337 TDRP-203ENST00000523656 2622 ntTSL 5 BASIC19.31■□□□□ 0.68
SLC28A1O00337 ACY1-215ENST00000636358 1684 ntAPPRIS P1 TSL 1 (best) BASIC19.31■□□□□ 0.68
SLC28A1O00337 MAZ-214ENST00000568544 1464 ntTSL 2 BASIC19.31■□□□□ 0.68
SLC28A1O00337 MAST1-208ENST00000591495 1496 ntTSL 5 BASIC19.31■□□□□ 0.68
SLC28A1O00337 ST6GALNAC6-215ENST00000542456 2018 ntTSL 2 BASIC19.31■□□□□ 0.68
SLC28A1O00337 MARK1-205ENST00000611084 5321 ntAPPRIS ALT1 TSL 1 (best) BASIC19.31■□□□□ 0.68
SLC28A1O00337 KCNQ5-202ENST00000355194 6566 ntAPPRIS ALT1 TSL 5 BASIC19.31■□□□□ 0.68
SLC28A1O00337 KCNQ5-206ENST00000402622 6596 ntAPPRIS ALT2 TSL 5 BASIC19.31■□□□□ 0.68
SLC28A1O00337 SBNO2-201ENST00000361757 4923 ntAPPRIS P4 TSL 1 (best) BASIC19.31■□□□□ 0.68
SLC28A1O00337 NFKBIB-201ENST00000313582 1159 ntAPPRIS P1 TSL 1 (best) BASIC19.31■□□□□ 0.68
SLC28A1O00337 ARL6IP4-205ENST00000412505 818 ntTSL 5 BASIC19.31■□□□□ 0.68
SLC28A1O00337 AC093762.2-201ENST00000641700 291 ntAPPRIS P1 BASIC19.31■□□□□ 0.68
SLC28A1O00337 EXTL3-213ENST00000523149 1779 ntTSL 5 BASIC19.31■□□□□ 0.68
SLC28A1O00337 FOXN3-209ENST00000555353 1595 ntAPPRIS P3 TSL 1 (best) BASIC19.31■□□□□ 0.68
SLC28A1O00337 C19orf25-202ENST00000436106 2403 ntAPPRIS P1 TSL 1 (best) BASIC19.31■□□□□ 0.68
SLC28A1O00337 TSPAN17-202ENST00000310032 2550 ntTSL 5 BASIC19.31■□□□□ 0.68
SLC28A1O00337 BTBD9-205ENST00000419706 2034 ntTSL 1 (best) BASIC19.3■□□□□ 0.68
SLC28A1O00337 ASMTL-206ENST00000534940 2048 ntTSL 2 BASIC19.3■□□□□ 0.68
SLC28A1O00337 CERKL-201ENST00000339098 1677 ntAPPRIS P3 TSL 1 (best) BASIC19.3■□□□□ 0.68
SLC28A1O00337 TMPRSS6-207ENST00000442782 1695 ntTSL 1 (best) BASIC19.3■□□□□ 0.68
SLC28A1O00337 FGFRL1-203ENST00000504138 1663 ntAPPRIS P1 TSL 1 (best) BASIC19.3■□□□□ 0.68
SLC28A1O00337 AC125437.2-201ENST00000625180 2167 ntBASIC19.3■□□□□ 0.68
SLC28A1O00337 LIMS2-207ENST00000409808 2315 ntAPPRIS ALT1 TSL 5 BASIC19.3■□□□□ 0.68
SLC28A1O00337 GABRD-201ENST00000378585 1961 ntAPPRIS P2 TSL 1 (best) BASIC19.3■□□□□ 0.68
SLC28A1O00337 PCDHB11-202ENST00000624887 1973 ntTSL 2 BASIC19.3■□□□□ 0.68
SLC28A1O00337 CDK6-202ENST00000424848 1465 ntAPPRIS P1 TSL 1 (best) BASIC19.3■□□□□ 0.68
SLC28A1O00337 LEF1-203ENST00000438313 1488 ntAPPRIS ALT1 TSL 1 (best) BASIC19.3■□□□□ 0.68
SLC28A1O00337 EIF2B1-204ENST00000537073 1768 ntTSL 2 BASIC19.3■□□□□ 0.68
SLC28A1O00337 GP9-201ENST00000307395 889 ntAPPRIS P1 TSL 1 (best) BASIC19.3■□□□□ 0.68
SLC28A1O00337 DHRS4L2-204ENST00000537912 918 ntTSL 2 BASIC19.3■□□□□ 0.68
SLC28A1O00337 SLC25A29-212ENST00000555927 960 ntTSL 2 BASIC19.3■□□□□ 0.68
SLC28A1O00337 AC007773.1-201ENST00000592680 972 ntTSL 2 BASIC19.3■□□□□ 0.68
SLC28A1O00337 AC100791.3-201ENST00000617619 330 ntBASIC19.3■□□□□ 0.68
SLC28A1O00337 GLT8D1-213ENST00000491606 1577 ntAPPRIS P1 TSL 5 BASIC19.3■□□□□ 0.68
SLC28A1O00337 RNF32-208ENST00000432459 1893 ntAPPRIS P1 TSL 1 (best) BASIC19.3■□□□□ 0.68
SLC28A1O00337 MAN1B1-AS1-201ENST00000596585 1872 ntBASIC19.3■□□□□ 0.68
SLC28A1O00337 UTP4-201ENST00000314423 2322 ntAPPRIS P1 TSL 1 (best) BASIC19.3■□□□□ 0.68
SLC28A1O00337 SMARCD2-212ENST00000613943 2342 ntTSL 5 BASIC19.3■□□□□ 0.68
SLC28A1O00337 MRPL40-201ENST00000333130 1387 ntAPPRIS P1 TSL 1 (best) BASIC19.3■□□□□ 0.68
SLC28A1O00337 CDC123-201ENST00000281141 1542 ntAPPRIS P1 TSL 1 (best) BASIC19.3■□□□□ 0.68
SLC28A1O00337 POU3F2-201ENST00000328345 4879 ntAPPRIS P1 BASIC19.3■□□□□ 0.68
SLC28A1O00337 CRTC1-204ENST00000601916 1834 ntTSL 5 BASIC19.3■□□□□ 0.68
SLC28A1O00337 STARD10-201ENST00000334805 1963 ntAPPRIS P1 TSL 1 (best) BASIC19.3■□□□□ 0.68
SLC28A1O00337 AC011511.1-201ENST00000452032 1956 ntAPPRIS P1 TSL 2 BASIC19.3■□□□□ 0.68
SLC28A1O00337 AGFG2-201ENST00000300176 4796 ntAPPRIS P1 TSL 1 (best) BASIC19.29■□□□□ 0.68
SLC28A1O00337 PEX6-201ENST00000244546 2696 ntTSL 1 (best) BASIC19.29■□□□□ 0.68
SLC28A1O00337 TOR1A-201ENST00000351698 2076 ntAPPRIS P1 TSL 1 (best) BASIC19.29■□□□□ 0.68
Retrieved 100 of 98,524 protein–RNA pairs in 24.8 ms