Protein–RNA interactions for Protein: P06340

HLA-DOA, HLA class II histocompatibility antigen, DO alpha chain, humanhuman

Predictions only

Length 250 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HLA-DOAP06340 PARP9-205ENST00000477522 3128 ntAPPRIS ALT2 TSL 1 (best) BASIC9.03□□□□□ -0.96
HLA-DOAP06340 RNPC3-208ENST00000533099 3641 ntAPPRIS P2 TSL 5 BASIC9.03□□□□□ -0.96
HLA-DOAP06340 DCLRE1C-211ENST00000396817 2761 ntTSL 1 (best) BASIC9.03□□□□□ -0.96
HLA-DOAP06340 AC006269.1-201ENST00000636752 2789 ntAPPRIS P1 TSL 5 BASIC9.03□□□□□ -0.96
HLA-DOAP06340 XIRP2-202ENST00000409043 3292 ntAPPRIS P3 TSL 1 (best) BASIC9.03□□□□□ -0.96
HLA-DOAP06340 GRAMD2B-212ENST00000513040 2196 ntTSL 2 BASIC9.03□□□□□ -0.96
HLA-DOAP06340 AC012360.3-201ENST00000610036 3449 ntBASIC9.03□□□□□ -0.96
HLA-DOAP06340 MGAT4A-202ENST00000393487 8382 ntAPPRIS P1 TSL 5 BASIC9.03□□□□□ -0.96
HLA-DOAP06340 CFLAR-201ENST00000309955 14672 ntAPPRIS P3 TSL 1 (best) BASIC9.03□□□□□ -0.96
HLA-DOAP06340 EYA3-208ENST00000540618 5885 ntTSL 2 BASIC9.03□□□□□ -0.96
HLA-DOAP06340 GUCY2GP-201ENST00000479705 3222 ntBASIC9.03□□□□□ -0.96
HLA-DOAP06340 USP16-204ENST00000399976 2963 ntAPPRIS P3 TSL 1 (best) BASIC9.03□□□□□ -0.96
HLA-DOAP06340 PDE4DIP-246ENST00000618462 8150 ntAPPRIS ALT2 TSL 1 (best) BASIC9.03□□□□□ -0.96
HLA-DOAP06340 AP000766.1-201ENST00000561746 4140 ntBASIC9.03□□□□□ -0.96
HLA-DOAP06340 CU633906.2-205ENST00000624847 1468 ntTSL 5 BASIC9.02□□□□□ -0.96
HLA-DOAP06340 KCNIP4-204ENST00000382150 1645 ntAPPRIS P3 TSL 1 (best) BASIC9.02□□□□□ -0.96
HLA-DOAP06340 PPP1R12B-216ENST00000608999 15248 ntAPPRIS P1 TSL 1 (best) BASIC9.02□□□□□ -0.97
HLA-DOAP06340 GCNT7-202ENST00000617620 1355 ntAPPRIS P1 TSL 5 BASIC9.02□□□□□ -0.97
HLA-DOAP06340 UBQLN3-201ENST00000311659 2407 ntAPPRIS P1 TSL 1 (best) BASIC9.02□□□□□ -0.97
HLA-DOAP06340 MAP4K4-212ENST00000456652 3855 ntTSL 5 BASIC9.02□□□□□ -0.97
HLA-DOAP06340 BDNF-206ENST00000395983 3776 ntAPPRIS P1 TSL 1 (best) BASIC9.02□□□□□ -0.97
HLA-DOAP06340 REG4-203ENST00000369401 2327 ntTSL 1 (best) BASIC9.02□□□□□ -0.97
HLA-DOAP06340 OR9Q1-201ENST00000335397 2488 ntAPPRIS P1 BASIC9.02□□□□□ -0.97
HLA-DOAP06340 AKAP7-202ENST00000342266 2461 ntTSL 1 (best) BASIC9.02□□□□□ -0.97
HLA-DOAP06340 ZNF415-214ENST00000597748 2461 ntTSL 5 BASIC9.02□□□□□ -0.97
HLA-DOAP06340 OR51H1-201ENST00000322059 999 ntAPPRIS P1 BASIC9.02□□□□□ -0.97
HLA-DOAP06340 LELP1-201ENST00000368747 523 ntAPPRIS P1 TSL 1 (best) BASIC9.02□□□□□ -0.97
HLA-DOAP06340 TOMM7-202ENST00000372879 514 ntTSL 4 BASIC9.02□□□□□ -0.97
HLA-DOAP06340 GAS8-AS1-201ENST00000408886 435 ntBASIC9.02□□□□□ -0.97
HLA-DOAP06340 REG3G-203ENST00000409471 575 ntTSL 1 (best) BASIC9.02□□□□□ -0.97
HLA-DOAP06340 LINC00159-202ENST00000414877 428 ntTSL 4 BASIC9.02□□□□□ -0.97
HLA-DOAP06340 AL731684.1-201ENST00000415530 439 ntTSL 5 BASIC9.02□□□□□ -0.97
HLA-DOAP06340 AC010145.1-201ENST00000422415 516 ntTSL 5 BASIC9.02□□□□□ -0.97
HLA-DOAP06340 RPL6P2-201ENST00000425480 783 ntBASIC9.02□□□□□ -0.97
HLA-DOAP06340 AC097527.1-201ENST00000437031 530 ntBASIC9.02□□□□□ -0.97
HLA-DOAP06340 AL031736.1-201ENST00000449688 618 ntBASIC9.02□□□□□ -0.97
HLA-DOAP06340 TRBV5-4-201ENST00000454561 544 ntAPPRIS P1 BASIC9.02□□□□□ -0.97
HLA-DOAP06340 TMEM108-AS1-201ENST00000504993 705 ntTSL 3 BASIC9.02□□□□□ -0.97
HLA-DOAP06340 AC110760.2-202ENST00000507517 946 ntTSL 1 (best) BASIC9.02□□□□□ -0.97
HLA-DOAP06340 RN7SL689P-201ENST00000577215 297 ntBASIC9.02□□□□□ -0.97
HLA-DOAP06340 ZNF431-203ENST00000594425 610 ntTSL 2 BASIC9.02□□□□□ -0.97
HLA-DOAP06340 AL390058.1-201ENST00000603834 629 ntBASIC9.02□□□□□ -0.97
HLA-DOAP06340 FXYD6P1-201ENST00000604857 285 ntBASIC9.02□□□□□ -0.97
HLA-DOAP06340 AL096855.2-201ENST00000605785 369 ntBASIC9.02□□□□□ -0.97
HLA-DOAP06340 AL031670.1-201ENST00000619343 669 ntTSL 3 BASIC9.02□□□□□ -0.97
HLA-DOAP06340 NUMB-223ENST00000556772 5172 ntTSL 1 (best) BASIC9.02□□□□□ -0.97
HLA-DOAP06340 NRP1-212ENST00000432372 4137 ntTSL 1 (best) BASIC9.02□□□□□ -0.97
HLA-DOAP06340 SFR1-201ENST00000369727 1438 ntAPPRIS P4 TSL 2 BASIC9.02□□□□□ -0.97
HLA-DOAP06340 CASR-205ENST00000639785 10047 ntAPPRIS P1 TSL 1 (best) BASIC9.02□□□□□ -0.97
HLA-DOAP06340 TOPORS-202ENST00000379858 3621 ntAPPRIS ALT2 TSL 1 (best) BASIC9.02□□□□□ -0.97
HLA-DOAP06340 ABLIM3-207ENST00000508983 2011 ntTSL 1 (best) BASIC9.02□□□□□ -0.97
HLA-DOAP06340 DGKG-202ENST00000344484 3445 ntTSL 1 (best) BASIC9.02□□□□□ -0.97
HLA-DOAP06340 PPP2R2B-202ENST00000394409 10704 ntAPPRIS P1 TSL 1 (best) BASIC9.02□□□□□ -0.97
HLA-DOAP06340 AP003066.1-201ENST00000527528 1647 ntTSL 1 (best) BASIC9.02□□□□□ -0.97
HLA-DOAP06340 FKBP15-201ENST00000238256 4336 ntAPPRIS P2 TSL 1 (best) BASIC9.01□□□□□ -0.97
HLA-DOAP06340 ZNF667-202ENST00000504904 4390 ntAPPRIS P1 TSL 2 BASIC9.01□□□□□ -0.97
HLA-DOAP06340 GSTO2-202ENST00000369707 6423 ntTSL 1 (best) BASIC9.01□□□□□ -0.97
HLA-DOAP06340 CSTF2T-201ENST00000331173 4105 ntAPPRIS P1 BASIC9.01□□□□□ -0.97
HLA-DOAP06340 KIAA1217-201ENST00000307544 3281 ntTSL 1 (best) BASIC9.01□□□□□ -0.97
HLA-DOAP06340 ZNF300-202ENST00000394226 3256 ntAPPRIS ALT2 TSL 5 BASIC9.01□□□□□ -0.97
HLA-DOAP06340 ESRRG-221ENST00000493603 5304 ntAPPRIS P1 TSL 1 (best) BASIC9.01□□□□□ -0.97
HLA-DOAP06340 MORF4L2-208ENST00000441076 1828 ntAPPRIS P1 TSL 1 (best) BASIC9.01□□□□□ -0.97
HLA-DOAP06340 FHL1-204ENST00000370683 2565 ntAPPRIS P1 TSL 1 (best) BASIC9.01□□□□□ -0.97
HLA-DOAP06340 TRIM16-202ENST00000416464 3184 ntTSL 2 BASIC9.01□□□□□ -0.97
HLA-DOAP06340 ATP2B4-201ENST00000341360 4658 ntTSL 1 (best) BASIC9.01□□□□□ -0.97
HLA-DOAP06340 KCNH7-202ENST00000332142 4113 ntAPPRIS P1 TSL 1 (best) BASIC9.01□□□□□ -0.97
HLA-DOAP06340 IL17F-201ENST00000336123 850 ntAPPRIS P1 TSL 1 (best) BASIC9.01□□□□□ -0.97
HLA-DOAP06340 NR1I3-203ENST00000367981 1076 ntTSL 1 (best) BASIC9.01□□□□□ -0.97
HLA-DOAP06340 AC074375.1-201ENST00000372993 192 ntBASIC9.01□□□□□ -0.97
HLA-DOAP06340 TRGV3-201ENST00000390346 537 ntAPPRIS P1 BASIC9.01□□□□□ -0.97
HLA-DOAP06340 RN7SKP117-201ENST00000410175 264 ntBASIC9.01□□□□□ -0.97
HLA-DOAP06340 AC231533.2-201ENST00000419045 978 ntBASIC9.01□□□□□ -0.97
HLA-DOAP06340 TAS2R2P-201ENST00000421146 910 ntBASIC9.01□□□□□ -0.97
HLA-DOAP06340 AL445430.2-201ENST00000423149 686 ntTSL 1 (best) BASIC9.01□□□□□ -0.97
HLA-DOAP06340 PMCHL1-203ENST00000423301 697 ntTSL 1 (best) BASIC9.01□□□□□ -0.97
HLA-DOAP06340 AC007388.1-201ENST00000426083 1438 ntTSL 1 (best) BASIC9.01□□□□□ -0.97
HLA-DOAP06340 AL162231.2-201ENST00000434627 665 ntTSL 2 BASIC9.01□□□□□ -0.97
HLA-DOAP06340 AC106869.1-202ENST00000441997 604 ntTSL 4 BASIC9.01□□□□□ -0.97
HLA-DOAP06340 AL355483.3-201ENST00000446686 752 ntTSL 3 BASIC9.01□□□□□ -0.97
HLA-DOAP06340 AC104389.2-201ENST00000450768 887 ntBASIC9.01□□□□□ -0.97
HLA-DOAP06340 GLYCTK-AS1-203ENST00000493616 445 ntTSL 3 BASIC9.01□□□□□ -0.97
HLA-DOAP06340 AC098487.1-204ENST00000506972 610 ntTSL 3 BASIC9.01□□□□□ -0.97
HLA-DOAP06340 CORIN-208ENST00000508498 3200 ntAPPRIS ALT2 TSL 2 BASIC9.01□□□□□ -0.97
HLA-DOAP06340 LINC01094-206ENST00000514130 594 ntTSL 4 BASIC9.01□□□□□ -0.97
HLA-DOAP06340 AC083843.1-201ENST00000521444 849 ntTSL 4 BASIC9.01□□□□□ -0.97
HLA-DOAP06340 SUPT16H-204ENST00000555943 915 ntTSL 2 BASIC9.01□□□□□ -0.97
HLA-DOAP06340 EIF4EBP2P2-201ENST00000563883 333 ntBASIC9.01□□□□□ -0.97
HLA-DOAP06340 AC099518.1-201ENST00000568032 841 ntTSL 3 BASIC9.01□□□□□ -0.97
HLA-DOAP06340 MIR5010-201ENST00000582846 120 ntBASIC9.01□□□□□ -0.97
HLA-DOAP06340 GLUD1P2-201ENST00000583339 201 ntBASIC9.01□□□□□ -0.97
HLA-DOAP06340 GLUD1P8-201ENST00000585063 203 ntBASIC9.01□□□□□ -0.97
HLA-DOAP06340 AC090241.1-201ENST00000587732 621 ntBASIC9.01□□□□□ -0.97
HLA-DOAP06340 AC099777.1-201ENST00000603779 1070 ntBASIC9.01□□□□□ -0.97
HLA-DOAP06340 AC023206.1-201ENST00000605824 298 ntBASIC9.01□□□□□ -0.97
HLA-DOAP06340 AL022238.3-201ENST00000609279 443 ntBASIC9.01□□□□□ -0.97
HLA-DOAP06340 MIAT_exon1.1-201ENST00000617016 135 ntBASIC9.01□□□□□ -0.97
HLA-DOAP06340 AC129908.1-201ENST00000624553 648 ntBASIC9.01□□□□□ -0.97
HLA-DOAP06340 AL513321.2-202ENST00000634479 921 ntTSL 5 BASIC9.01□□□□□ -0.97
HLA-DOAP06340 OR13D1-202ENST00000641530 945 ntAPPRIS P1 BASIC9.01□□□□□ -0.97
HLA-DOAP06340 SPRYD4-201ENST00000338146 10779 ntAPPRIS P1 TSL 1 (best) BASIC9.01□□□□□ -0.97
Retrieved 100 of 98,524 protein–RNA pairs in 86.1 ms