Protein–RNA interactions for Protein: Q9Y566

SHANK1, SH3 and multiple ankyrin repeat domains protein 1, humanhuman

Predictions only

Length 2,161 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SHANK1Q9Y566 ANAPC11-207ENST00000572639 578 ntAPPRIS P1 TSL 3 BASIC18.27■□□□□ 0.52
SHANK1Q9Y566 WDR88-203ENST00000592765 651 ntTSL 5 BASIC18.27■□□□□ 0.52
SHANK1Q9Y566 AOC3-207ENST00000617500 2392 ntTSL 4 BASIC18.27■□□□□ 0.52
SHANK1Q9Y566 SH3GL1-206ENST00000598564 2194 ntTSL 2 BASIC18.27■□□□□ 0.52
SHANK1Q9Y566 C19orf12-201ENST00000323670 2464 ntAPPRIS P1 TSL 2 BASIC18.27■□□□□ 0.52
SHANK1Q9Y566 LPCAT4-201ENST00000314891 2262 ntAPPRIS P1 TSL 1 (best) BASIC18.27■□□□□ 0.52
SHANK1Q9Y566 EPS8L1-209ENST00000588359 1407 ntTSL 5 BASIC18.27■□□□□ 0.52
SHANK1Q9Y566 ANKRD13D-202ENST00000447274 2881 ntTSL 1 (best) BASIC18.27■□□□□ 0.51
SHANK1Q9Y566 GTPBP6-201ENST00000326153 1907 ntAPPRIS P1 TSL 1 (best) BASIC18.27■□□□□ 0.51
SHANK1Q9Y566 FAH-202ENST00000407106 2152 ntAPPRIS P1 TSL 5 BASIC18.27■□□□□ 0.51
SHANK1Q9Y566 AC079598.2-202ENST00000546624 1451 ntBASIC18.27■□□□□ 0.51
SHANK1Q9Y566 PDXK-205ENST00000398081 2251 ntTSL 2 BASIC18.27■□□□□ 0.51
SHANK1Q9Y566 RPP25L-201ENST00000297613 1092 ntAPPRIS P1 TSL 2 BASIC18.27■□□□□ 0.51
SHANK1Q9Y566 TBC1D7-201ENST00000343141 1027 ntTSL 1 (best) BASIC18.27■□□□□ 0.51
SHANK1Q9Y566 IFI6-202ENST00000361157 841 ntAPPRIS ALT2 TSL 1 (best) BASIC18.27■□□□□ 0.51
SHANK1Q9Y566 IGHV3-73-201ENST00000390636 437 ntAPPRIS P1 BASIC18.27■□□□□ 0.51
SHANK1Q9Y566 KRT16P5-201ENST00000455284 522 ntBASIC18.27■□□□□ 0.51
SHANK1Q9Y566 RNF146-204ENST00000476956 884 ntTSL 2 BASIC18.27■□□□□ 0.51
SHANK1Q9Y566 IAH1-215ENST00000497473 1266 ntAPPRIS P1 TSL 1 (best) BASIC18.27■□□□□ 0.51
SHANK1Q9Y566 FBXL12-203ENST00000586073 582 ntTSL 2 BASIC18.27■□□□□ 0.51
SHANK1Q9Y566 AC092384.1-201ENST00000378347 1812 ntTSL 2 BASIC18.27■□□□□ 0.51
SHANK1Q9Y566 ARHGDIA-202ENST00000400721 1568 ntTSL 2 BASIC18.27■□□□□ 0.51
SHANK1Q9Y566 ROPN1-209ENST00000495093 1376 ntTSL 1 (best) BASIC18.26■□□□□ 0.51
SHANK1Q9Y566 ILDR2-204ENST00000525740 2242 ntTSL 5 BASIC18.26■□□□□ 0.51
SHANK1Q9Y566 PEX10-202ENST00000447513 1997 ntAPPRIS P2 TSL 1 (best) BASIC18.26■□□□□ 0.51
SHANK1Q9Y566 BID-212ENST00000614949 1988 ntTSL 5 BASIC18.26■□□□□ 0.51
SHANK1Q9Y566 SPAST-204ENST00000621856 1715 ntTSL 1 (best) BASIC18.26■□□□□ 0.51
SHANK1Q9Y566 RUNDC3B-207ENST00000493037 2020 ntAPPRIS ALT2 TSL 1 (best) BASIC18.26■□□□□ 0.51
SHANK1Q9Y566 CYHR1-202ENST00000403000 1477 ntTSL 1 (best) BASIC18.26■□□□□ 0.51
SHANK1Q9Y566 DLG3-203ENST00000374360 5905 ntAPPRIS P2 TSL 1 (best) BASIC18.26■□□□□ 0.51
SHANK1Q9Y566 DRAM2-201ENST00000286692 2246 ntAPPRIS P1 TSL 1 (best) BASIC18.26■□□□□ 0.51
SHANK1Q9Y566 MDK-201ENST00000359803 985 ntAPPRIS P2 TSL 2 BASIC18.26■□□□□ 0.51
SHANK1Q9Y566 AC134772.1-201ENST00000438872 885 ntTSL 3 BASIC18.26■□□□□ 0.51
SHANK1Q9Y566 GLDC-219ENST00000640208 420 ntTSL 2 BASIC18.26■□□□□ 0.51
SHANK1Q9Y566 APPL2-201ENST00000258530 3239 ntAPPRIS P1 TSL 1 (best) BASIC18.26■□□□□ 0.51
SHANK1Q9Y566 ADORA2A-AS1-203ENST00000427813 2027 ntTSL 1 (best) BASIC18.26■□□□□ 0.51
SHANK1Q9Y566 DUSP9-201ENST00000342782 2433 ntAPPRIS P1 TSL 1 (best) BASIC18.26■□□□□ 0.51
SHANK1Q9Y566 FBXL19-205ENST00000562319 2462 ntAPPRIS ALT2 TSL 2 BASIC18.26■□□□□ 0.51
SHANK1Q9Y566 MEIS2-207ENST00000557796 2666 ntTSL 5 BASIC18.26■□□□□ 0.51
SHANK1Q9Y566 CBLC-201ENST00000270279 1579 ntAPPRIS P1 TSL 1 (best) BASIC18.26■□□□□ 0.51
SHANK1Q9Y566 KCNK17-201ENST00000373231 1658 ntAPPRIS P3 TSL 1 (best) BASIC18.25■□□□□ 0.51
SHANK1Q9Y566 MMP23A-201ENST00000234610 1017 ntBASIC18.25■□□□□ 0.51
SHANK1Q9Y566 C11orf86-201ENST00000308963 1187 ntAPPRIS P1 TSL 2 BASIC18.25■□□□□ 0.51
SHANK1Q9Y566 PACRGL-207ENST00000502938 810 ntTSL 4 BASIC18.25■□□□□ 0.51
SHANK1Q9Y566 AC026427.1-201ENST00000508993 555 ntTSL 3 BASIC18.25■□□□□ 0.51
SHANK1Q9Y566 ARHGEF25-201ENST00000286494 2552 ntTSL 1 (best) BASIC18.25■□□□□ 0.51
SHANK1Q9Y566 CTU2-202ENST00000453996 1751 ntAPPRIS ALT2 TSL 1 (best) BASIC18.25■□□□□ 0.51
SHANK1Q9Y566 FBXO25-203ENST00000352684 2360 ntTSL 5 BASIC18.25■□□□□ 0.51
SHANK1Q9Y566 TRIM3-202ENST00000359518 3042 ntAPPRIS P1 TSL 5 BASIC18.25■□□□□ 0.51
SHANK1Q9Y566 AC007743.1-203ENST00000447423 1623 ntTSL 2 BASIC18.25■□□□□ 0.51
SHANK1Q9Y566 MON1A-203ENST00000455683 1617 ntAPPRIS ALT2 TSL 1 (best) BASIC18.25■□□□□ 0.51
SHANK1Q9Y566 IFI6-201ENST00000339145 822 ntAPPRIS P4 TSL 2 BASIC18.25■□□□□ 0.51
SHANK1Q9Y566 CRAT-202ENST00000393384 973 ntTSL 2 BASIC18.25■□□□□ 0.51
SHANK1Q9Y566 AC004540.1-203ENST00000421862 907 ntTSL 5 BASIC18.25■□□□□ 0.51
SHANK1Q9Y566 TTTY14-205ENST00000454875 544 ntTSL 2 BASIC18.25■□□□□ 0.51
SHANK1Q9Y566 USP46-AS1-201ENST00000503051 1048 ntTSL 3 BASIC18.25■□□□□ 0.51
SHANK1Q9Y566 MRPL36-202ENST00000505059 610 ntAPPRIS P1 TSL 1 (best) BASIC18.25■□□□□ 0.51
SHANK1Q9Y566 BNIP3L-206ENST00000523515 915 ntTSL 2 BASIC18.25■□□□□ 0.51
SHANK1Q9Y566 CDKN3-209ENST00000556102 938 ntTSL 5 BASIC18.25■□□□□ 0.51
SHANK1Q9Y566 BRWD1-AS2-201ENST00000603064 1028 ntBASIC18.25■□□□□ 0.51
SHANK1Q9Y566 AL031963.3-201ENST00000606441 850 ntBASIC18.25■□□□□ 0.51
SHANK1Q9Y566 IGFBP7-AS1-201ENST00000499667 1389 ntTSL 1 (best) BASIC18.25■□□□□ 0.51
SHANK1Q9Y566 FBXW11-203ENST00000393802 2181 ntTSL 1 (best) BASIC18.25■□□□□ 0.51
SHANK1Q9Y566 SAV1-201ENST00000324679 3063 ntAPPRIS P1 TSL 1 (best) BASIC18.25■□□□□ 0.51
SHANK1Q9Y566 SLC25A22-216ENST00000531214 1790 ntAPPRIS P1 TSL 2 BASIC18.25■□□□□ 0.51
SHANK1Q9Y566 AC124283.5-201ENST00000624661 1809 ntBASIC18.25■□□□□ 0.51
SHANK1Q9Y566 SMIM11B-205ENST00000624304 1863 ntAPPRIS P1 TSL 1 (best) BASIC18.24■□□□□ 0.51
SHANK1Q9Y566 MXRA8-203ENST00000445648 2001 ntTSL 2 BASIC18.24■□□□□ 0.51
SHANK1Q9Y566 DNAJA4-202ENST00000394852 3116 ntAPPRIS P1 TSL 1 (best) BASIC18.24■□□□□ 0.51
SHANK1Q9Y566 AL954642.1-201ENST00000428088 538 ntTSL 3 BASIC18.24■□□□□ 0.51
SHANK1Q9Y566 AL355355.2-201ENST00000442321 338 ntBASIC18.24■□□□□ 0.51
SHANK1Q9Y566 RBM17P1-201ENST00000453646 1190 ntBASIC18.24■□□□□ 0.51
SHANK1Q9Y566 AZIN1-AS1-215ENST00000522939 644 ntTSL 2 BASIC18.24■□□□□ 0.51
SHANK1Q9Y566 HLX-AS1-201ENST00000552026 563 ntTSL 4 BASIC18.24■□□□□ 0.51
SHANK1Q9Y566 RPS15-203ENST00000586096 570 ntTSL 2 BASIC18.24■□□□□ 0.51
SHANK1Q9Y566 SPAG16-209ENST00000447990 1330 ntTSL 1 (best) BASIC18.24■□□□□ 0.51
SHANK1Q9Y566 KRT19-201ENST00000361566 1390 ntAPPRIS P1 TSL 1 (best) BASIC18.24■□□□□ 0.51
SHANK1Q9Y566 AC008687.4-201ENST00000637680 1485 ntAPPRIS P1 TSL 5 BASIC18.24■□□□□ 0.51
SHANK1Q9Y566 DDAH1-205ENST00000539042 1519 ntAPPRIS P1 TSL 5 BASIC18.24■□□□□ 0.51
SHANK1Q9Y566 EPB41L4B-202ENST00000374566 5800 ntAPPRIS P4 TSL 1 (best) BASIC18.24■□□□□ 0.51
SHANK1Q9Y566 HOXA6-201ENST00000222728 989 ntAPPRIS P1 TSL 1 (best) BASIC18.24■□□□□ 0.51
SHANK1Q9Y566 CMTM8-201ENST00000307526 1174 ntAPPRIS P1 TSL 1 (best) BASIC18.24■□□□□ 0.51
SHANK1Q9Y566 AC110769.1-201ENST00000420161 815 ntTSL 3 BASIC18.24■□□□□ 0.51
SHANK1Q9Y566 BABAM1-202ENST00000447614 930 ntAPPRIS ALT2 TSL 5 BASIC18.24■□□□□ 0.51
SHANK1Q9Y566 NT5C-211ENST00000582170 653 ntTSL 3 BASIC18.24■□□□□ 0.51
SHANK1Q9Y566 CCDC106-207ENST00000591578 1592 ntAPPRIS P1 TSL 1 (best) BASIC18.24■□□□□ 0.51
SHANK1Q9Y566 AL121829.2-201ENST00000620908 328 ntBASIC18.24■□□□□ 0.51
SHANK1Q9Y566 OAF-201ENST00000328965 2525 ntAPPRIS P2 TSL 1 (best) BASIC18.23■□□□□ 0.51
SHANK1Q9Y566 CACNA1A-218ENST00000635895 8657 ntAPPRIS ALT2 TSL 5 BASIC18.23■□□□□ 0.51
SHANK1Q9Y566 CACNA1A-257ENST00000638009 8665 ntAPPRIS ALT2 TSL 1 (best) BASIC18.23■□□□□ 0.51
SHANK1Q9Y566 FADS6-204ENST00000614223 2044 ntAPPRIS ALT2 TSL 5 BASIC18.23■□□□□ 0.51
SHANK1Q9Y566 TRIM54-202ENST00000380075 1967 ntAPPRIS P1 TSL 1 (best) BASIC18.23■□□□□ 0.51
SHANK1Q9Y566 ZGPAT-204ENST00000369967 1890 ntAPPRIS P1 TSL 5 BASIC18.23■□□□□ 0.51
SHANK1Q9Y566 EXOC3-AS1-202ENST00000623673 1663 ntBASIC18.23■□□□□ 0.51
SHANK1Q9Y566 ANKRD65-204ENST00000520296 1632 ntTSL 1 (best) BASIC18.23■□□□□ 0.51
SHANK1Q9Y566 POLDIP2-202ENST00000618887 1524 ntTSL 2 BASIC18.23■□□□□ 0.51
SHANK1Q9Y566 CIZ1-204ENST00000372938 2984 ntAPPRIS P3 TSL 1 (best) BASIC18.23■□□□□ 0.51
SHANK1Q9Y566 CCNG2-204ENST00000502280 1459 ntAPPRIS P1 TSL 2 BASIC18.23■□□□□ 0.51
SHANK1Q9Y566 DAB1-202ENST00000371230 1150 ntTSL 5 BASIC18.23■□□□□ 0.51
SHANK1Q9Y566 CTNNBIP1-204ENST00000400904 1206 ntAPPRIS P1 TSL 1 (best) BASIC18.23■□□□□ 0.51
Retrieved 100 of 98,524 protein–RNA pairs in 31.7 ms