Protein–RNA interactions for Protein: Q9UGP4

LIMD1, LIM domain-containing protein 1, humanhuman

Predictions only

Length 676 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LIMD1Q9UGP4 TBC1D7-201ENST00000343141 1027 ntTSL 1 (best) BASIC21.02■□□□□ 0.96
LIMD1Q9UGP4 IGHV3-73-201ENST00000390636 437 ntAPPRIS P1 BASIC21.02■□□□□ 0.96
LIMD1Q9UGP4 AP001059.1-201ENST00000442785 523 ntTSL 3 BASIC21.02■□□□□ 0.96
LIMD1Q9UGP4 ARF3-208ENST00000541959 807 ntAPPRIS P1 TSL 5 BASIC21.02■□□□□ 0.96
LIMD1Q9UGP4 ATP6V0C-203ENST00000565223 668 ntTSL 3 BASIC21.02■□□□□ 0.96
LIMD1Q9UGP4 ATP6V0C-204ENST00000568562 477 ntTSL 3 BASIC21.02■□□□□ 0.96
LIMD1Q9UGP4 ANAPC11-207ENST00000572639 578 ntAPPRIS P1 TSL 3 BASIC21.02■□□□□ 0.96
LIMD1Q9UGP4 P4HB-223ENST00000576390 439 ntTSL 4 BASIC21.02■□□□□ 0.96
LIMD1Q9UGP4 ELAC1-203ENST00000588577 694 ntTSL 2 BASIC21.02■□□□□ 0.96
LIMD1Q9UGP4 SMAGP-204ENST00000603838 816 ntTSL 2 BASIC21.02■□□□□ 0.96
LIMD1Q9UGP4 VGF-202ENST00000445482 2477 ntAPPRIS P1 TSL 5 BASIC21.02■□□□□ 0.96
LIMD1Q9UGP4 ACAA1-202ENST00000333167 1785 ntAPPRIS P1 TSL 1 (best) BASIC21.02■□□□□ 0.96
LIMD1Q9UGP4 KRT8P9-201ENST00000558927 1449 ntBASIC21.02■□□□□ 0.96
LIMD1Q9UGP4 CERKL-201ENST00000339098 1677 ntAPPRIS P3 TSL 1 (best) BASIC21.02■□□□□ 0.95
LIMD1Q9UGP4 ILDR2-205ENST00000526687 2299 ntTSL 5 BASIC21.02■□□□□ 0.95
LIMD1Q9UGP4 CAB39-203ENST00000410084 1324 ntAPPRIS P1 TSL 1 (best) BASIC21.02■□□□□ 0.95
LIMD1Q9UGP4 NAAA-206ENST00000507956 1300 ntAPPRIS ALT2 TSL 2 BASIC21.02■□□□□ 0.95
LIMD1Q9UGP4 AC005906.2-202ENST00000638821 2168 ntTSL 5 BASIC21.02■□□□□ 0.95
LIMD1Q9UGP4 SETD6-201ENST00000219315 1553 ntAPPRIS ALT2 TSL 1 (best) BASIC21.02■□□□□ 0.95
LIMD1Q9UGP4 BTBD1-202ENST00000379403 1467 ntTSL 5 BASIC21.01■□□□□ 0.95
LIMD1Q9UGP4 CCNG2-204ENST00000502280 1459 ntAPPRIS P1 TSL 2 BASIC21.01■□□□□ 0.95
LIMD1Q9UGP4 PGPEP1L-202ENST00000535714 1483 ntTSL 2 BASIC21.01■□□□□ 0.95
LIMD1Q9UGP4 DYRK1B-204ENST00000593685 2724 ntAPPRIS P3 TSL 5 BASIC21.01■□□□□ 0.95
LIMD1Q9UGP4 CDC42SE2-206ENST00000503291 2025 ntTSL 1 (best) BASIC21.01■□□□□ 0.95
LIMD1Q9UGP4 STX5-201ENST00000294179 1794 ntAPPRIS P1 TSL 1 (best) BASIC21.01■□□□□ 0.95
LIMD1Q9UGP4 AL162231.1-203ENST00000416454 465 ntAPPRIS ALT2 TSL 2 BASIC21.01■□□□□ 0.95
LIMD1Q9UGP4 HES2-206ENST00000489730 730 ntTSL 2 BASIC21.01■□□□□ 0.95
LIMD1Q9UGP4 DECR2-212ENST00000627716 352 ntTSL 2 BASIC21.01■□□□□ 0.95
LIMD1Q9UGP4 HOMEZ-201ENST00000357460 4971 ntAPPRIS P2 TSL 1 (best) BASIC21.01■□□□□ 0.95
LIMD1Q9UGP4 CD55-203ENST00000367063 1691 ntAPPRIS ALT2 TSL 1 (best) BASIC21.01■□□□□ 0.95
LIMD1Q9UGP4 SMOX-212ENST00000621355 2322 ntTSL 1 (best) BASIC21.01■□□□□ 0.95
LIMD1Q9UGP4 RFXANK-201ENST00000303088 1407 ntAPPRIS P1 TSL 1 (best) BASIC21.01■□□□□ 0.95
LIMD1Q9UGP4 IER2-201ENST00000292433 2085 ntAPPRIS P1 TSL 1 (best) BASIC21.01■□□□□ 0.95
LIMD1Q9UGP4 MFSD14C-208ENST00000637864 1802 ntAPPRIS ALT2 TSL 2 BASIC21.01■□□□□ 0.95
LIMD1Q9UGP4 RBAK-202ENST00000396912 6551 ntAPPRIS P1 TSL 1 (best) BASIC21.01■□□□□ 0.95
LIMD1Q9UGP4 CADPS-202ENST00000357948 5190 ntAPPRIS ALT2 TSL 1 (best) BASIC21.01■□□□□ 0.95
LIMD1Q9UGP4 ORAI1-202ENST00000617316 2138 ntAPPRIS P1 TSL 1 (best) BASIC21.01■□□□□ 0.95
LIMD1Q9UGP4 ADRM1-201ENST00000253003 1478 ntAPPRIS P1 TSL 1 (best) BASIC21.01■□□□□ 0.95
LIMD1Q9UGP4 FAH-202ENST00000407106 2152 ntAPPRIS P1 TSL 5 BASIC21■□□□□ 0.95
LIMD1Q9UGP4 RAPH1-210ENST00000453034 2394 ntAPPRIS ALT2 TSL 1 (best) BASIC21■□□□□ 0.95
LIMD1Q9UGP4 DMPK-220ENST00000618091 2503 ntTSL 1 (best) BASIC21■□□□□ 0.95
LIMD1Q9UGP4 AC092384.1-201ENST00000378347 1812 ntTSL 2 BASIC21■□□□□ 0.95
LIMD1Q9UGP4 RNF39-202ENST00000376751 1970 ntTSL 1 (best) BASIC21■□□□□ 0.95
LIMD1Q9UGP4 TRIM54-202ENST00000380075 1967 ntAPPRIS P1 TSL 1 (best) BASIC21■□□□□ 0.95
LIMD1Q9UGP4 USP48-205ENST00000421625 2818 ntTSL 2 BASIC21■□□□□ 0.95
LIMD1Q9UGP4 FUOM-203ENST00000368552 762 ntTSL 1 (best) BASIC21■□□□□ 0.95
LIMD1Q9UGP4 AL353807.1-201ENST00000427475 662 ntBASIC21■□□□□ 0.95
LIMD1Q9UGP4 RBM17P1-201ENST00000453646 1190 ntBASIC21■□□□□ 0.95
LIMD1Q9UGP4 SLC52A2-205ENST00000526752 710 ntTSL 3 BASIC21■□□□□ 0.95
LIMD1Q9UGP4 SLC39A11-207ENST00000579732 1004 ntTSL 2 BASIC21■□□□□ 0.95
LIMD1Q9UGP4 AC020911.2-202ENST00000588945 593 ntTSL 3 BASIC21■□□□□ 0.95
LIMD1Q9UGP4 AL121829.2-201ENST00000620908 328 ntBASIC21■□□□□ 0.95
LIMD1Q9UGP4 SH3RF3-201ENST00000309415 5803 ntAPPRIS P1 TSL 5 BASIC21■□□□□ 0.95
LIMD1Q9UGP4 RASGRP2-210ENST00000394430 2174 ntTSL 2 BASIC21■□□□□ 0.95
LIMD1Q9UGP4 BRWD1-202ENST00000341322 2495 ntTSL 1 (best) BASIC21■□□□□ 0.95
LIMD1Q9UGP4 ALDH16A1-202ENST00000455361 2470 ntTSL 2 BASIC21■□□□□ 0.95
LIMD1Q9UGP4 ABCG4-204ENST00000615496 2459 ntAPPRIS P1 TSL 2 BASIC21■□□□□ 0.95
LIMD1Q9UGP4 SRI-203ENST00000419179 1307 ntTSL 2 BASIC21■□□□□ 0.95
LIMD1Q9UGP4 OXER1-201ENST00000378661 1781 ntAPPRIS P1 BASIC21■□□□□ 0.95
LIMD1Q9UGP4 LGR4-202ENST00000389858 5163 ntTSL 1 (best) BASIC20.99■□□□□ 0.95
LIMD1Q9UGP4 DDAH1-205ENST00000539042 1519 ntAPPRIS P1 TSL 5 BASIC20.99■□□□□ 0.95
LIMD1Q9UGP4 THOC6-209ENST00000575576 1360 ntTSL 5 BASIC20.99■□□□□ 0.95
LIMD1Q9UGP4 CSNK1G2-201ENST00000255641 2918 ntAPPRIS P1 TSL 1 (best) BASIC20.99■□□□□ 0.95
LIMD1Q9UGP4 NR2F2-204ENST00000453270 1712 ntTSL 1 (best) BASIC20.99■□□□□ 0.95
LIMD1Q9UGP4 LINC01140-202ENST00000467438 2375 ntTSL 2 BASIC20.99■□□□□ 0.95
LIMD1Q9UGP4 PRDX5-201ENST00000265462 893 ntAPPRIS P1 TSL 1 (best) BASIC20.99■□□□□ 0.95
LIMD1Q9UGP4 CLDND2-201ENST00000291715 974 ntAPPRIS P1 TSL 1 (best) BASIC20.99■□□□□ 0.95
LIMD1Q9UGP4 UNC5B-AS1-201ENST00000447119 647 ntTSL 2 BASIC20.99■□□□□ 0.95
LIMD1Q9UGP4 CENPS-CORT-202ENST00000465026 494 ntTSL 3 BASIC20.99■□□□□ 0.95
LIMD1Q9UGP4 CENPS-CORT-203ENST00000470413 626 ntTSL 2 BASIC20.99■□□□□ 0.95
LIMD1Q9UGP4 DHRS4-206ENST00000558581 1143 ntTSL 1 (best) BASIC20.99■□□□□ 0.95
LIMD1Q9UGP4 AC010422.3-201ENST00000597692 838 ntAPPRIS P1 TSL 2 BASIC20.99■□□□□ 0.95
LIMD1Q9UGP4 PLPP7-202ENST00000372264 2095 ntAPPRIS P1 TSL 1 (best) BASIC20.99■□□□□ 0.95
LIMD1Q9UGP4 TMEM165-201ENST00000381334 1928 ntAPPRIS P1 TSL 1 (best) BASIC20.99■□□□□ 0.95
LIMD1Q9UGP4 RBPJL-202ENST00000372741 1636 ntTSL 1 (best) BASIC20.99■□□□□ 0.95
LIMD1Q9UGP4 PPP3CC-202ENST00000289963 2135 ntAPPRIS ALT1 TSL 1 (best) BASIC20.99■□□□□ 0.95
LIMD1Q9UGP4 NBPF21P-201ENST00000425093 1451 ntBASIC20.99■□□□□ 0.95
LIMD1Q9UGP4 ESPN-202ENST00000416731 1338 ntTSL 5 BASIC20.99■□□□□ 0.95
LIMD1Q9UGP4 ODC1-201ENST00000234111 2653 ntAPPRIS P1 TSL 1 (best) BASIC20.99■□□□□ 0.95
LIMD1Q9UGP4 FDFT1-201ENST00000220584 2176 ntAPPRIS P1 TSL 1 (best) BASIC20.99■□□□□ 0.95
LIMD1Q9UGP4 FSCN2-202ENST00000417245 1665 ntAPPRIS P1 TSL 1 (best) BASIC20.99■□□□□ 0.95
LIMD1Q9UGP4 RHOT1-205ENST00000545287 2516 ntAPPRIS P4 TSL 5 BASIC20.99■□□□□ 0.95
LIMD1Q9UGP4 DENND4B-201ENST00000361217 5706 ntAPPRIS P2 TSL 1 (best) BASIC20.98■□□□□ 0.95
LIMD1Q9UGP4 LMF1-202ENST00000543238 2103 ntTSL 2 BASIC20.98■□□□□ 0.95
LIMD1Q9UGP4 MRPS24-201ENST00000317534 707 ntAPPRIS P1 TSL 1 (best) BASIC20.98■□□□□ 0.95
LIMD1Q9UGP4 AKR1A1-201ENST00000351829 1166 ntAPPRIS P1 TSL 1 (best) BASIC20.98■□□□□ 0.95
LIMD1Q9UGP4 HAGLROS-201ENST00000426615 1121 ntTSL 2 BASIC20.98■□□□□ 0.95
LIMD1Q9UGP4 SMIM20-201ENST00000506197 935 ntAPPRIS P1 TSL 1 (best) BASIC20.98■□□□□ 0.95
LIMD1Q9UGP4 AC117500.4-201ENST00000542797 617 ntTSL 3 BASIC20.98■□□□□ 0.95
LIMD1Q9UGP4 DCAKD-205ENST00000588499 990 ntAPPRIS P1 TSL 2 BASIC20.98■□□□□ 0.95
LIMD1Q9UGP4 AC003005.1-201ENST00000601674 582 ntAPPRIS P5 TSL 2 BASIC20.98■□□□□ 0.95
LIMD1Q9UGP4 AC073195.1-201ENST00000607241 877 ntBASIC20.98■□□□□ 0.95
LIMD1Q9UGP4 AP000525.1-201ENST00000608286 694 ntBASIC20.98■□□□□ 0.95
LIMD1Q9UGP4 ANKRD54-211ENST00000609454 825 ntTSL 3 BASIC20.98■□□□□ 0.95
LIMD1Q9UGP4 SPINK2-206ENST00000618802 608 ntTSL 3 BASIC20.98■□□□□ 0.95
LIMD1Q9UGP4 TMPRSS5-202ENST00000536856 1811 ntTSL 1 (best) BASIC20.98■□□□□ 0.95
LIMD1Q9UGP4 KCNK12-201ENST00000327876 6227 ntAPPRIS P1 TSL 1 (best) BASIC20.98■□□□□ 0.95
LIMD1Q9UGP4 NR0B1-202ENST00000378970 2021 ntAPPRIS P1 TSL 1 (best) BASIC20.98■□□□□ 0.95
LIMD1Q9UGP4 AC079598.2-202ENST00000546624 1451 ntBASIC20.98■□□□□ 0.95
LIMD1Q9UGP4 DNM2-205ENST00000585892 2774 ntTSL 1 (best) BASIC20.98■□□□□ 0.95
Retrieved 100 of 98,524 protein–RNA pairs in 57.6 ms