Protein–RNA interactions for Protein: Q9UBP4

DKK3, Dickkopf-related protein 3, humanhuman

Predictions only

Length 350 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
DKK3Q9UBP4 RTP5-201ENST00000343216 2296 ntAPPRIS P1 TSL 1 (best) BASIC20.23■□□□□ 0.83
DKK3Q9UBP4 VRK2-207ENST00000440705 1676 ntAPPRIS ALT2 TSL 1 (best) BASIC20.22■□□□□ 0.83
DKK3Q9UBP4 HSD11B1L-219ENST00000581893 1540 ntTSL 1 (best) BASIC20.22■□□□□ 0.83
DKK3Q9UBP4 S1PR5-202ENST00000439028 2191 ntAPPRIS P1 TSL 2 BASIC20.22■□□□□ 0.83
DKK3Q9UBP4 LARGE2-208ENST00000531526 2528 ntAPPRIS P3 TSL 2 BASIC20.22■□□□□ 0.83
DKK3Q9UBP4 SLC35E4-202ENST00000406566 2081 ntTSL 1 (best) BASIC20.22■□□□□ 0.83
DKK3Q9UBP4 ASB18-201ENST00000409749 1401 ntAPPRIS P1 TSL 1 (best) BASIC20.22■□□□□ 0.83
DKK3Q9UBP4 DBNL-207ENST00000440166 1415 ntTSL 2 BASIC20.22■□□□□ 0.83
DKK3Q9UBP4 ETV7-205ENST00000538992 1434 ntTSL 2 BASIC20.22■□□□□ 0.83
DKK3Q9UBP4 SLC35A3-210ENST00000638371 2298 ntTSL 5 BASIC20.22■□□□□ 0.83
DKK3Q9UBP4 SLC2A8-215ENST00000610552 1763 ntTSL 3 BASIC20.22■□□□□ 0.83
DKK3Q9UBP4 EZH2-201ENST00000320356 2639 ntAPPRIS P4 TSL 1 (best) BASIC20.22■□□□□ 0.83
DKK3Q9UBP4 TMEM243-201ENST00000257637 1063 ntAPPRIS P1 TSL 1 (best) BASIC20.22■□□□□ 0.83
DKK3Q9UBP4 PRORSD1P-201ENST00000295112 541 ntBASIC20.22■□□□□ 0.83
DKK3Q9UBP4 FMR1-202ENST00000334557 1295 ntTSL 1 (best) BASIC20.22■□□□□ 0.83
DKK3Q9UBP4 AC073316.3-201ENST00000437354 982 ntTSL 3 BASIC20.22■□□□□ 0.83
DKK3Q9UBP4 SMIM20-201ENST00000506197 935 ntAPPRIS P1 TSL 1 (best) BASIC20.22■□□□□ 0.83
DKK3Q9UBP4 PRORSD1P-203ENST00000579162 626 ntTSL 5 BASIC20.22■□□□□ 0.83
DKK3Q9UBP4 AC120498.8-201ENST00000614275 531 ntBASIC20.22■□□□□ 0.83
DKK3Q9UBP4 AC006557.6-201ENST00000623071 864 ntBASIC20.22■□□□□ 0.83
DKK3Q9UBP4 TMEM151B-202ENST00000451188 4895 ntAPPRIS P2 TSL 5 BASIC20.22■□□□□ 0.83
DKK3Q9UBP4 C18orf8-214ENST00000615148 1958 ntTSL 5 BASIC20.22■□□□□ 0.83
DKK3Q9UBP4 MEIS2-207ENST00000557796 2666 ntTSL 5 BASIC20.22■□□□□ 0.83
DKK3Q9UBP4 LTK-201ENST00000263800 3046 ntAPPRIS P4 TSL 1 (best) BASIC20.22■□□□□ 0.83
DKK3Q9UBP4 TACO1-201ENST00000258975 1469 ntAPPRIS P1 TSL 1 (best) BASIC20.22■□□□□ 0.83
DKK3Q9UBP4 ETV7-203ENST00000373737 1488 ntAPPRIS ALT2 TSL 1 (best) BASIC20.22■□□□□ 0.83
DKK3Q9UBP4 CSNK1G2-201ENST00000255641 2918 ntAPPRIS P1 TSL 1 (best) BASIC20.22■□□□□ 0.83
DKK3Q9UBP4 AC005224.2-201ENST00000571192 1885 ntTSL 2 BASIC20.22■□□□□ 0.83
DKK3Q9UBP4 PKMYT1-204ENST00000440027 2061 ntTSL 2 BASIC20.22■□□□□ 0.83
DKK3Q9UBP4 TRIP13-201ENST00000166345 2672 ntAPPRIS P1 TSL 1 (best) BASIC20.21■□□□□ 0.83
DKK3Q9UBP4 PEX6-201ENST00000244546 2696 ntTSL 1 (best) BASIC20.21■□□□□ 0.83
DKK3Q9UBP4 SEPT7-206ENST00000435235 1584 ntTSL 2 BASIC20.21■□□□□ 0.83
DKK3Q9UBP4 NDUFAF6-203ENST00000396124 1798 ntAPPRIS P1 TSL 2 BASIC20.21■□□□□ 0.83
DKK3Q9UBP4 SMURF1-201ENST00000361125 5737 ntTSL 1 (best) BASIC20.21■□□□□ 0.83
DKK3Q9UBP4 BID-215ENST00000622694 2199 ntAPPRIS P1 TSL 1 (best) BASIC20.21■□□□□ 0.83
DKK3Q9UBP4 EP300-201ENST00000263253 9587 ntAPPRIS P1 TSL 1 (best) BASIC20.21■□□□□ 0.83
DKK3Q9UBP4 LINC01140-202ENST00000467438 2375 ntTSL 2 BASIC20.21■□□□□ 0.83
DKK3Q9UBP4 CABP2-202ENST00000353903 789 ntAPPRIS P1 TSL 5 BASIC20.21■□□□□ 0.83
DKK3Q9UBP4 OGG1-209ENST00000383826 1069 ntTSL 5 BASIC20.21■□□□□ 0.83
DKK3Q9UBP4 LINC01881-205ENST00000456398 1235 ntTSL 5 BASIC20.21■□□□□ 0.83
DKK3Q9UBP4 AC008443.1-203ENST00000505151 886 ntTSL 2 BASIC20.21■□□□□ 0.83
DKK3Q9UBP4 TMEM191C-212ENST00000536718 480 ntAPPRIS ALT2 TSL 5 BASIC20.21■□□□□ 0.83
DKK3Q9UBP4 SPEG-203ENST00000396688 1457 ntTSL 3 BASIC20.21■□□□□ 0.83
DKK3Q9UBP4 LBX2-203ENST00000460508 1452 ntTSL 1 (best) BASIC20.21■□□□□ 0.83
DKK3Q9UBP4 TACC3-213ENST00000617535 1693 ntTSL 5 BASIC20.21■□□□□ 0.83
DKK3Q9UBP4 TRMT2A-204ENST00000439169 2473 ntTSL 5 BASIC20.21■□□□□ 0.83
DKK3Q9UBP4 DMRTB1-201ENST00000371445 1910 ntAPPRIS P1 TSL 1 (best) BASIC20.21■□□□□ 0.83
DKK3Q9UBP4 ANKRD2-201ENST00000298808 1350 ntTSL 1 (best) BASIC20.21■□□□□ 0.83
DKK3Q9UBP4 NKX1-2-201ENST00000451024 3364 ntAPPRIS P1 TSL 5 BASIC20.2■□□□□ 0.82
DKK3Q9UBP4 APLP1-203ENST00000586861 2052 ntTSL 2 BASIC20.2■□□□□ 0.82
DKK3Q9UBP4 MRGPRE-201ENST00000389832 1409 ntAPPRIS P1 TSL 2 BASIC20.2■□□□□ 0.82
DKK3Q9UBP4 NFS1-214ENST00000541387 1436 ntTSL 2 BASIC20.2■□□□□ 0.82
DKK3Q9UBP4 CD247-202ENST00000392122 1678 ntAPPRIS ALT1 TSL 1 (best) BASIC20.2■□□□□ 0.82
DKK3Q9UBP4 AC092720.2-201ENST00000602388 1665 ntBASIC20.2■□□□□ 0.82
DKK3Q9UBP4 UPF3A-202ENST00000375299 2387 ntAPPRIS P1 TSL 1 (best) BASIC20.2■□□□□ 0.82
DKK3Q9UBP4 PTGER3-203ENST00000354608 1470 ntAPPRIS ALT2 TSL 5 BASIC20.2■□□□□ 0.82
DKK3Q9UBP4 EPN2-212ENST00000575595 1491 ntTSL 2 BASIC20.2■□□□□ 0.82
DKK3Q9UBP4 CACNA1A-218ENST00000635895 8657 ntAPPRIS ALT2 TSL 5 BASIC20.2■□□□□ 0.82
DKK3Q9UBP4 CACNA1A-257ENST00000638009 8665 ntAPPRIS ALT2 TSL 1 (best) BASIC20.2■□□□□ 0.82
DKK3Q9UBP4 CAPN10-202ENST00000270364 1267 ntTSL 2 BASIC20.2■□□□□ 0.82
DKK3Q9UBP4 ZNF529-AS1-202ENST00000475219 1033 ntTSL 1 (best) BASIC20.2■□□□□ 0.82
DKK3Q9UBP4 DDN-AS1-201ENST00000547395 858 ntTSL 2 BASIC20.2■□□□□ 0.82
DKK3Q9UBP4 AL929601.1-201ENST00000551565 573 ntTSL 4 BASIC20.2■□□□□ 0.82
DKK3Q9UBP4 MMD2-204ENST00000612910 778 ntTSL 5 BASIC20.2■□□□□ 0.82
DKK3Q9UBP4 BAALC-205ENST00000438105 2662 ntTSL 1 (best) BASIC20.2■□□□□ 0.82
DKK3Q9UBP4 ZNF821-202ENST00000425432 2000 ntAPPRIS P1 TSL 5 BASIC20.2■□□□□ 0.82
DKK3Q9UBP4 ARRB2-216ENST00000574954 1348 ntTSL 1 (best) BASIC20.2■□□□□ 0.82
DKK3Q9UBP4 CCDC88B-203ENST00000359902 2326 ntTSL 1 (best) BASIC20.2■□□□□ 0.82
DKK3Q9UBP4 WDR4-202ENST00000398208 2122 ntAPPRIS P1 TSL 1 (best) BASIC20.2■□□□□ 0.82
DKK3Q9UBP4 MTMR9LP-202ENST00000423995 1878 ntTSL 2 BASIC20.2■□□□□ 0.82
DKK3Q9UBP4 FAM118B-209ENST00000533050 2402 ntAPPRIS P3 TSL 1 (best) BASIC20.19■□□□□ 0.82
DKK3Q9UBP4 AC010173.1-201ENST00000549023 1453 ntTSL 2 BASIC20.19■□□□□ 0.82
DKK3Q9UBP4 DYNLRB1-203ENST00000374846 1044 ntTSL 5 BASIC20.19■□□□□ 0.82
DKK3Q9UBP4 HLA-G-202ENST00000376815 851 ntBASIC20.19■□□□□ 0.82
DKK3Q9UBP4 HLA-G-203ENST00000376818 1127 ntBASIC20.19■□□□□ 0.82
DKK3Q9UBP4 MAGI2-AS3-211ENST00000451809 707 ntTSL 3 BASIC20.19■□□□□ 0.82
DKK3Q9UBP4 HES2-206ENST00000489730 730 ntTSL 2 BASIC20.19■□□□□ 0.82
DKK3Q9UBP4 AL031963.3-201ENST00000606441 850 ntBASIC20.19■□□□□ 0.82
DKK3Q9UBP4 MTCL1-201ENST00000306329 5718 ntAPPRIS ALT2 TSL 5 BASIC20.19■□□□□ 0.82
DKK3Q9UBP4 CTGF-201ENST00000367976 2339 ntAPPRIS P1 TSL 1 (best) BASIC20.19■□□□□ 0.82
DKK3Q9UBP4 LRCH4-211ENST00000619071 2098 ntTSL 5 BASIC20.18■□□□□ 0.82
DKK3Q9UBP4 KMT2B-201ENST00000420124 8469 ntAPPRIS P1 TSL 1 (best) BASIC20.18■□□□□ 0.82
DKK3Q9UBP4 MFSD10-211ENST00000514800 1776 ntTSL 5 BASIC20.18■□□□□ 0.82
DKK3Q9UBP4 DENND4B-201ENST00000361217 5706 ntAPPRIS P2 TSL 1 (best) BASIC20.18■□□□□ 0.82
DKK3Q9UBP4 HPS6-201ENST00000299238 2649 ntAPPRIS P1 BASIC20.18■□□□□ 0.82
DKK3Q9UBP4 ETV2-202ENST00000379026 1571 ntAPPRIS ALT2 TSL 2 BASIC20.18■□□□□ 0.82
DKK3Q9UBP4 IRF7-204ENST00000397570 1943 ntAPPRIS ALT2 TSL 1 (best) BASIC20.18■□□□□ 0.82
DKK3Q9UBP4 ARHGDIA-202ENST00000400721 1568 ntTSL 2 BASIC20.18■□□□□ 0.82
DKK3Q9UBP4 CDKN1C-203ENST00000430149 1570 ntAPPRIS P3 TSL 1 (best) BASIC20.18■□□□□ 0.82
DKK3Q9UBP4 SLC22A23-205ENST00000436008 6641 ntAPPRIS ALT2 TSL 5 BASIC20.18■□□□□ 0.82
DKK3Q9UBP4 PMAIP1-201ENST00000269518 1262 ntTSL 1 (best) BASIC20.18■□□□□ 0.82
DKK3Q9UBP4 NDUFA8-201ENST00000373768 844 ntAPPRIS P1 TSL 1 (best) BASIC20.18■□□□□ 0.82
DKK3Q9UBP4 C14orf144-202ENST00000555282 854 ntTSL 3 BASIC20.18■□□□□ 0.82
DKK3Q9UBP4 MAZ-215ENST00000569978 567 ntTSL 1 (best) BASIC20.18■□□□□ 0.82
DKK3Q9UBP4 AC069544.1-201ENST00000609399 999 ntBASIC20.18■□□□□ 0.82
DKK3Q9UBP4 CAMK2B-216ENST00000440254 2097 ntAPPRIS P4 TSL 1 (best) BASIC20.18■□□□□ 0.82
DKK3Q9UBP4 ADAM9-203ENST00000466936 2053 ntTSL 2 BASIC20.18■□□□□ 0.82
DKK3Q9UBP4 WDR25-201ENST00000335290 2123 ntAPPRIS P1 TSL 1 (best) BASIC20.18■□□□□ 0.82
DKK3Q9UBP4 CPNE9-202ENST00000383831 1751 ntTSL 5 BASIC20.18■□□□□ 0.82
DKK3Q9UBP4 H19-201ENST00000411754 1788 ntTSL 5 BASIC20.18■□□□□ 0.82
Retrieved 100 of 98,524 protein–RNA pairs in 25.8 ms