Protein–RNA interactions for Protein: Q9NPC8

SIX2, Homeobox protein SIX2, humanhuman

Predictions only

Length 291 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SIX2Q9NPC8 PRTN3-201ENST00000234347 1026 ntAPPRIS P1 TSL 1 (best) BASIC21.65■■□□□ 1.06
SIX2Q9NPC8 GGTLC1-201ENST00000278765 974 ntAPPRIS P1 TSL 1 (best) BASIC21.65■■□□□ 1.06
SIX2Q9NPC8 OLFM1-206ENST00000371799 961 ntTSL 1 (best) BASIC21.65■■□□□ 1.06
SIX2Q9NPC8 PGPEP1L-201ENST00000378919 995 ntTSL 1 (best) BASIC21.65■■□□□ 1.06
SIX2Q9NPC8 FAM207A-202ENST00000397826 880 ntAPPRIS ALT1 TSL 1 (best) BASIC21.65■■□□□ 1.06
SIX2Q9NPC8 AL512625.2-201ENST00000417533 625 ntBASIC21.65■■□□□ 1.06
SIX2Q9NPC8 FNDC5-207ENST00000640867 639 ntAPPRIS P2 TSL 2 BASIC21.65■■□□□ 1.06
SIX2Q9NPC8 IL17RE-206ENST00000454190 2757 ntTSL 2 BASIC21.65■■□□□ 1.06
SIX2Q9NPC8 TEX45-201ENST00000361664 1679 ntAPPRIS P2 TSL 1 (best) BASIC21.65■■□□□ 1.06
SIX2Q9NPC8 CRLF3-201ENST00000324238 2957 ntAPPRIS P1 TSL 1 (best) BASIC21.65■■□□□ 1.06
SIX2Q9NPC8 HSPD1-202ENST00000388968 2455 ntAPPRIS P1 TSL 1 (best) BASIC21.65■■□□□ 1.06
SIX2Q9NPC8 KLC1-219ENST00000555836 2467 ntTSL 5 BASIC21.65■■□□□ 1.06
SIX2Q9NPC8 WT1-212ENST00000640146 1554 ntAPPRIS P3 TSL 1 (best) BASIC21.65■■□□□ 1.06
SIX2Q9NPC8 TSSK6-201ENST00000585580 1467 ntAPPRIS P1 BASIC21.64■■□□□ 1.06
SIX2Q9NPC8 PPP1R3F-201ENST00000055335 3421 ntAPPRIS P1 TSL 2 BASIC21.64■■□□□ 1.06
SIX2Q9NPC8 ORAI3-204ENST00000566237 1393 ntTSL 5 BASIC21.64■■□□□ 1.06
SIX2Q9NPC8 NEU4-202ENST00000391969 2526 ntAPPRIS P1 TSL 2 BASIC21.64■■□□□ 1.06
SIX2Q9NPC8 C3orf18-203ENST00000426034 2486 ntAPPRIS P1 TSL 1 (best) BASIC21.64■■□□□ 1.05
SIX2Q9NPC8 STYXL1-204ENST00000360591 1127 ntTSL 5 BASIC21.64■■□□□ 1.05
SIX2Q9NPC8 MELTF-AS1-202ENST00000415244 951 ntTSL 1 (best) BASIC21.64■■□□□ 1.05
SIX2Q9NPC8 GRPEL2-202ENST00000416916 1006 ntTSL 2 BASIC21.64■■□□□ 1.05
SIX2Q9NPC8 AC000035.1-201ENST00000634116 343 ntTSL 5 BASIC21.64■■□□□ 1.05
SIX2Q9NPC8 AC008694.1-202ENST00000636953 945 ntBASIC21.64■■□□□ 1.05
SIX2Q9NPC8 SETD6-201ENST00000219315 1553 ntAPPRIS ALT2 TSL 1 (best) BASIC21.64■■□□□ 1.05
SIX2Q9NPC8 CCT5-205ENST00000506600 1939 ntTSL 2 BASIC21.64■■□□□ 1.05
SIX2Q9NPC8 C19orf25-202ENST00000436106 2403 ntAPPRIS P1 TSL 1 (best) BASIC21.64■■□□□ 1.05
SIX2Q9NPC8 AC091729.3-201ENST00000423008 1401 ntTSL 2 BASIC21.63■■□□□ 1.05
SIX2Q9NPC8 CADPS-203ENST00000383710 5471 ntAPPRIS ALT2 TSL 1 (best) BASIC21.63■■□□□ 1.05
SIX2Q9NPC8 RAC1-201ENST00000348035 2323 ntAPPRIS P1 TSL 1 (best) BASIC21.63■■□□□ 1.05
SIX2Q9NPC8 CCDC62-204ENST00000392441 2936 ntAPPRIS ALT2 TSL 5 BASIC21.63■■□□□ 1.05
SIX2Q9NPC8 FBXL19-207ENST00000565690 2570 ntAPPRIS ALT2 TSL 5 BASIC21.63■■□□□ 1.05
SIX2Q9NPC8 BCKDK-202ENST00000287507 1907 ntTSL 1 (best) BASIC21.63■■□□□ 1.05
SIX2Q9NPC8 MRM1-204ENST00000614766 1857 ntAPPRIS P1 TSL 1 (best) BASIC21.63■■□□□ 1.05
SIX2Q9NPC8 IL15RA-207ENST00000397250 584 ntTSL 2 BASIC21.63■■□□□ 1.05
SIX2Q9NPC8 HMX1-202ENST00000506970 651 ntTSL 1 (best) BASIC21.63■■□□□ 1.05
SIX2Q9NPC8 IL15RA-215ENST00000528354 1037 ntTSL 2 BASIC21.63■■□□□ 1.05
SIX2Q9NPC8 IL15RA-220ENST00000620345 1115 ntAPPRIS ALT2 TSL 1 (best) BASIC21.63■■□□□ 1.05
SIX2Q9NPC8 EML2-220ENST00000589876 2364 ntAPPRIS ALT2 TSL 1 (best) BASIC21.63■■□□□ 1.05
SIX2Q9NPC8 KLF2-201ENST00000248071 2018 ntAPPRIS P1 TSL 1 (best) BASIC21.63■■□□□ 1.05
SIX2Q9NPC8 FUZ-212ENST00000528094 1479 ntTSL 2 BASIC21.63■■□□□ 1.05
SIX2Q9NPC8 TOR1B-201ENST00000259339 2769 ntAPPRIS P1 TSL 1 (best) BASIC21.63■■□□□ 1.05
SIX2Q9NPC8 SPOCK3-215ENST00000510741 1963 ntAPPRIS ALT2 TSL 5 BASIC21.63■■□□□ 1.05
SIX2Q9NPC8 GPRC5C-204ENST00000392629 1419 ntAPPRIS ALT2 TSL 1 (best) BASIC21.63■■□□□ 1.05
SIX2Q9NPC8 IGFALS-201ENST00000215539 2116 ntAPPRIS P1 TSL 1 (best) BASIC21.62■■□□□ 1.05
SIX2Q9NPC8 MOK-225ENST00000522867 1883 ntTSL 5 BASIC21.62■■□□□ 1.05
SIX2Q9NPC8 RNF135-205ENST00000535306 2098 ntTSL 1 (best) BASIC21.62■■□□□ 1.05
SIX2Q9NPC8 CACNA1H-201ENST00000348261 8208 ntAPPRIS P4 TSL 1 (best) BASIC21.62■■□□□ 1.05
SIX2Q9NPC8 EIF5A-205ENST00000419711 1271 ntAPPRIS P1 TSL 1 (best) BASIC21.62■■□□□ 1.05
SIX2Q9NPC8 ARL5A-202ENST00000428992 747 ntTSL 2 BASIC21.62■■□□□ 1.05
SIX2Q9NPC8 PARL-206ENST00000435888 1098 ntTSL 5 BASIC21.62■■□□□ 1.05
SIX2Q9NPC8 MMP25-AS1-204ENST00000572574 794 ntTSL 5 BASIC21.62■■□□□ 1.05
SIX2Q9NPC8 AC133552.2-202ENST00000575694 574 ntBASIC21.62■■□□□ 1.05
SIX2Q9NPC8 AL161421.1-201ENST00000619666 1101 ntTSL 1 (best) BASIC21.62■■□□□ 1.05
SIX2Q9NPC8 NPDC1-202ENST00000371601 1494 ntAPPRIS P2 TSL 1 (best) BASIC21.62■■□□□ 1.05
SIX2Q9NPC8 ACTR5-201ENST00000243903 2565 ntAPPRIS P1 TSL 1 (best) BASIC21.62■■□□□ 1.05
SIX2Q9NPC8 FBXO27-201ENST00000292853 2330 ntAPPRIS P2 TSL 1 (best) BASIC21.62■■□□□ 1.05
SIX2Q9NPC8 RFXANK-201ENST00000303088 1407 ntAPPRIS P1 TSL 1 (best) BASIC21.62■■□□□ 1.05
SIX2Q9NPC8 LEFTY2-202ENST00000420304 2085 ntTSL 2 BASIC21.62■■□□□ 1.05
SIX2Q9NPC8 CYP2A7-202ENST00000301146 2281 ntAPPRIS P1 TSL 1 (best) BASIC21.62■■□□□ 1.05
SIX2Q9NPC8 GALNT10-202ENST00000377661 3778 ntTSL 5 BASIC21.62■■□□□ 1.05
SIX2Q9NPC8 TMEM189-201ENST00000371650 2222 ntAPPRIS ALT1 TSL 1 (best) BASIC21.61■■□□□ 1.05
SIX2Q9NPC8 HSD11B1L-204ENST00000411793 1362 ntTSL 1 (best) BASIC21.61■■□□□ 1.05
SIX2Q9NPC8 MMP24-201ENST00000246186 4414 ntAPPRIS P1 TSL 1 (best) BASIC21.61■■□□□ 1.05
SIX2Q9NPC8 GDF15-201ENST00000252809 1200 ntAPPRIS P1 TSL 1 (best) BASIC21.61■■□□□ 1.05
SIX2Q9NPC8 DCXR-201ENST00000306869 887 ntAPPRIS P1 TSL 1 (best) BASIC21.61■■□□□ 1.05
SIX2Q9NPC8 CLDN3-201ENST00000395145 1274 ntAPPRIS P1 BASIC21.61■■□□□ 1.05
SIX2Q9NPC8 VPS53-216ENST00000574029 585 ntTSL 4 BASIC21.61■■□□□ 1.05
SIX2Q9NPC8 AL137784.2-201ENST00000607332 1000 ntBASIC21.61■■□□□ 1.05
SIX2Q9NPC8 MARS-234ENST00000630571 216 ntTSL 5 BASIC21.61■■□□□ 1.05
SIX2Q9NPC8 MARS-235ENST00000630803 183 ntTSL 3 BASIC21.61■■□□□ 1.05
SIX2Q9NPC8 TMEM179-206ENST00000616017 1645 ntBASIC21.61■■□□□ 1.05
SIX2Q9NPC8 SKI-201ENST00000378536 5613 ntAPPRIS P1 TSL 1 (best) BASIC21.61■■□□□ 1.05
SIX2Q9NPC8 KRT8P17-201ENST00000453110 1448 ntBASIC21.61■■□□□ 1.05
SIX2Q9NPC8 TMEM41B-207ENST00000611268 1440 ntAPPRIS P1 TSL 1 (best) BASIC21.61■■□□□ 1.05
SIX2Q9NPC8 ASCL4-201ENST00000342331 2260 ntAPPRIS P1 BASIC21.6■■□□□ 1.05
SIX2Q9NPC8 DVL3-203ENST00000431765 2294 ntTSL 5 BASIC21.6■■□□□ 1.05
SIX2Q9NPC8 RAD23A-203ENST00000586534 1746 ntAPPRIS P3 TSL 1 (best) BASIC21.6■■□□□ 1.05
SIX2Q9NPC8 DISC1-215ENST00000602281 2761 ntAPPRIS ALT2 TSL 1 (best) BASIC21.6■■□□□ 1.05
SIX2Q9NPC8 NFIB-207ENST00000397579 3129 ntTSL 5 BASIC21.6■■□□□ 1.05
SIX2Q9NPC8 RALGPS1-204ENST00000373436 1667 ntTSL 1 (best) BASIC21.6■■□□□ 1.05
SIX2Q9NPC8 CRTAC1-203ENST00000370597 2890 ntTSL 1 (best) BASIC21.6■■□□□ 1.05
SIX2Q9NPC8 TCF7-201ENST00000342854 3045 ntAPPRIS P2 TSL 1 (best) BASIC21.6■■□□□ 1.05
SIX2Q9NPC8 ARNTL2-204ENST00000395901 1954 ntAPPRIS ALT2 TSL 1 (best) BASIC21.6■■□□□ 1.05
SIX2Q9NPC8 KIAA1456-201ENST00000400069 1982 ntTSL 2 BASIC21.6■■□□□ 1.05
SIX2Q9NPC8 ZCCHC9-204ENST00000438268 1248 ntAPPRIS P1 TSL 1 (best) BASIC21.6■■□□□ 1.05
SIX2Q9NPC8 ELOVL2-AS1-201ENST00000456190 737 ntTSL 3 BASIC21.6■■□□□ 1.05
SIX2Q9NPC8 DLX3-202ENST00000512495 834 ntTSL 2 BASIC21.6■■□□□ 1.05
SIX2Q9NPC8 FBXL8-203ENST00000518148 1054 ntTSL 2 BASIC21.6■■□□□ 1.05
SIX2Q9NPC8 LYRM1-205ENST00000562740 931 ntTSL 1 (best) BASIC21.6■■□□□ 1.05
SIX2Q9NPC8 FAM217A-201ENST00000274673 2265 ntAPPRIS P1 TSL 1 (best) BASIC21.6■■□□□ 1.05
SIX2Q9NPC8 CCS-208ENST00000533244 1430 ntAPPRIS P1 TSL 1 (best) BASIC21.6■■□□□ 1.05
SIX2Q9NPC8 IQCJ-SCHIP1-204ENST00000485419 2445 ntAPPRIS ALT2 TSL 2 BASIC21.6■■□□□ 1.05
SIX2Q9NPC8 IGFBP3-210ENST00000613132 2412 ntTSL 5 BASIC21.6■■□□□ 1.05
SIX2Q9NPC8 RGS11-204ENST00000397770 2390 ntAPPRIS P1 TSL 1 (best) BASIC21.6■■□□□ 1.05
SIX2Q9NPC8 ARHGAP22-204ENST00000417247 2340 ntTSL 2 BASIC21.6■■□□□ 1.05
SIX2Q9NPC8 ADRA1A-203ENST00000380572 1697 ntTSL 1 (best) BASIC21.6■■□□□ 1.05
SIX2Q9NPC8 GABRD-201ENST00000378585 1961 ntAPPRIS P2 TSL 1 (best) BASIC21.59■■□□□ 1.05
SIX2Q9NPC8 HAND2-AS1-237ENST00000616485 2420 ntTSL 2 BASIC21.59■■□□□ 1.05
SIX2Q9NPC8 IRGQ-205ENST00000602269 2210 ntAPPRIS P1 TSL 1 (best) BASIC21.59■■□□□ 1.05
SIX2Q9NPC8 SMNDC1-201ENST00000369592 1110 ntAPPRIS P1 TSL 3 BASIC21.59■■□□□ 1.05
Retrieved 100 of 98,524 protein–RNA pairs in 34.3 ms