Protein–RNA interactions for Protein: Q9HC56

PCDH9, Protocadherin-9, humanhuman

Predictions only

Length 1,237 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PCDH9Q9HC56 ZNF302-209ENST00000507959 854 ntTSL 2 BASIC20.78■□□□□ 0.92
PCDH9Q9HC56 FAM47E-204ENST00000510328 1002 ntAPPRIS ALT2 TSL 2 BASIC20.78■□□□□ 0.92
PCDH9Q9HC56 PET100-202ENST00000594797 719 ntAPPRIS P1 TSL 1 (best) BASIC20.78■□□□□ 0.92
PCDH9Q9HC56 AC005181.1-201ENST00000604782 1256 ntBASIC20.78■□□□□ 0.92
PCDH9Q9HC56 AC016405.3-201ENST00000607710 860 ntBASIC20.78■□□□□ 0.92
PCDH9Q9HC56 GDF6-203ENST00000621429 1179 ntTSL 5 BASIC20.78■□□□□ 0.92
PCDH9Q9HC56 TDRP-203ENST00000523656 2622 ntTSL 5 BASIC20.78■□□□□ 0.92
PCDH9Q9HC56 PTGER2-201ENST00000245457 2383 ntAPPRIS P1 TSL 1 (best) BASIC20.78■□□□□ 0.92
PCDH9Q9HC56 EML2-220ENST00000589876 2364 ntAPPRIS ALT2 TSL 1 (best) BASIC20.78■□□□□ 0.92
PCDH9Q9HC56 MAN2C1-244ENST00000618257 1346 ntTSL 5 BASIC20.78■□□□□ 0.92
PCDH9Q9HC56 NEIL3-201ENST00000264596 2408 ntAPPRIS P1 TSL 1 (best) BASIC20.77■□□□□ 0.92
PCDH9Q9HC56 P2RX2-201ENST00000343948 1494 ntAPPRIS P4 TSL 1 (best) BASIC20.77■□□□□ 0.92
PCDH9Q9HC56 CAPZB-205ENST00000433834 1462 ntTSL 2 BASIC20.77■□□□□ 0.92
PCDH9Q9HC56 OLFM1-205ENST00000371796 2492 ntTSL 2 BASIC20.77■□□□□ 0.92
PCDH9Q9HC56 NAP1L4-212ENST00000526115 1941 ntTSL 2 BASIC20.77■□□□□ 0.92
PCDH9Q9HC56 UBE2C-201ENST00000243893 476 ntTSL 2 BASIC20.77■□□□□ 0.92
PCDH9Q9HC56 DCXR-201ENST00000306869 887 ntAPPRIS P1 TSL 1 (best) BASIC20.77■□□□□ 0.92
PCDH9Q9HC56 MGST3-205ENST00000367889 1015 ntAPPRIS P1 TSL 1 (best) BASIC20.77■□□□□ 0.92
PCDH9Q9HC56 ZNF451-202ENST00000370702 458 ntTSL 2 BASIC20.77■□□□□ 0.92
PCDH9Q9HC56 APTR-203ENST00000430801 583 ntTSL 5 BASIC20.77■□□□□ 0.92
PCDH9Q9HC56 CASP6-205ENST00000505486 538 ntTSL 4 BASIC20.77■□□□□ 0.92
PCDH9Q9HC56 DHRS4-207ENST00000559632 1003 ntTSL 1 (best) BASIC20.77■□□□□ 0.92
PCDH9Q9HC56 Z92544.1-201ENST00000567091 730 ntTSL 3 BASIC20.77■□□□□ 0.92
PCDH9Q9HC56 BIN2-210ENST00000615107 2255 ntAPPRIS P1 TSL 1 (best) BASIC20.77■□□□□ 0.92
PCDH9Q9HC56 PNKP-215ENST00000600910 1600 ntTSL 5 BASIC20.77■□□□□ 0.92
PCDH9Q9HC56 CENPS-CORT-204ENST00000602296 1326 ntTSL 3 BASIC20.77■□□□□ 0.91
PCDH9Q9HC56 TACC3-213ENST00000617535 1693 ntTSL 5 BASIC20.77■□□□□ 0.91
PCDH9Q9HC56 KLHL11-201ENST00000319121 2383 ntAPPRIS P1 TSL 1 (best) BASIC20.77■□□□□ 0.91
PCDH9Q9HC56 FBLN1-204ENST00000402984 2355 ntTSL 5 BASIC20.77■□□□□ 0.91
PCDH9Q9HC56 MZF1-203ENST00000594234 2385 ntTSL 1 (best) BASIC20.77■□□□□ 0.91
PCDH9Q9HC56 FAM217A-201ENST00000274673 2265 ntAPPRIS P1 TSL 1 (best) BASIC20.76■□□□□ 0.91
PCDH9Q9HC56 AUH-202ENST00000375731 1577 ntAPPRIS P1 TSL 1 (best) BASIC20.76■□□□□ 0.91
PCDH9Q9HC56 AQP11-201ENST00000313578 2152 ntAPPRIS P1 TSL 1 (best) BASIC20.76■□□□□ 0.91
PCDH9Q9HC56 ULK2-202ENST00000395544 6010 ntAPPRIS P1 TSL 1 (best) BASIC20.76■□□□□ 0.91
PCDH9Q9HC56 ARHGAP27-201ENST00000290470 1376 ntTSL 1 (best) BASIC20.76■□□□□ 0.91
PCDH9Q9HC56 FYN-204ENST00000368678 2573 ntAPPRIS ALT1 TSL 5 BASIC20.76■□□□□ 0.91
PCDH9Q9HC56 BET1L-204ENST00000410108 637 ntTSL 3 BASIC20.76■□□□□ 0.91
PCDH9Q9HC56 CYP2T1P-201ENST00000432607 1285 ntBASIC20.76■□□□□ 0.91
PCDH9Q9HC56 GATA3-AS1-204ENST00000438755 675 ntTSL 1 (best) BASIC20.76■□□□□ 0.91
PCDH9Q9HC56 AC106738.2-202ENST00000558156 533 ntTSL 4 BASIC20.76■□□□□ 0.91
PCDH9Q9HC56 FGF14-IT1-202ENST00000607251 2123 ntTSL 2 BASIC20.76■□□□□ 0.91
PCDH9Q9HC56 SLC25A39-212ENST00000590194 1542 ntAPPRIS P3 TSL 5 BASIC20.76■□□□□ 0.91
PCDH9Q9HC56 MTUS2-202ENST00000380808 1793 ntAPPRIS P3 TSL 1 (best) BASIC20.76■□□□□ 0.91
PCDH9Q9HC56 DLG3-201ENST00000194900 6112 ntAPPRIS ALT2 TSL 5 BASIC20.76■□□□□ 0.91
PCDH9Q9HC56 ST6GAL2-203ENST00000409087 1657 ntTSL 1 (best) BASIC20.76■□□□□ 0.91
PCDH9Q9HC56 TNFSF11-203ENST00000398795 2199 ntAPPRIS P1 TSL 1 (best) BASIC20.76■□□□□ 0.91
PCDH9Q9HC56 COL15A1-205ENST00000610452 5422 ntAPPRIS ALT2 TSL 5 BASIC20.76■□□□□ 0.91
PCDH9Q9HC56 DOK1-201ENST00000233668 2555 ntAPPRIS P1 TSL 1 (best) BASIC20.76■□□□□ 0.91
PCDH9Q9HC56 ZNF582-202ENST00000586929 2053 ntAPPRIS P1 TSL 1 (best) BASIC20.76■□□□□ 0.91
PCDH9Q9HC56 ST7-OT4-201ENST00000397750 1576 ntTSL 1 (best) BASIC20.76■□□□□ 0.91
PCDH9Q9HC56 EEF1DP3-201ENST00000428783 1309 ntTSL 1 (best) BASIC20.76■□□□□ 0.91
PCDH9Q9HC56 ACY1-207ENST00000476854 1319 ntTSL 3 BASIC20.76■□□□□ 0.91
PCDH9Q9HC56 TXNDC5-201ENST00000379757 2964 ntAPPRIS P1 TSL 1 (best) BASIC20.76■□□□□ 0.91
PCDH9Q9HC56 WDR88-201ENST00000355868 1718 ntAPPRIS P2 TSL 2 BASIC20.75■□□□□ 0.91
PCDH9Q9HC56 AL645608.1-202ENST00000417705 1389 ntTSL 3 BASIC20.75■□□□□ 0.91
PCDH9Q9HC56 PANK1-201ENST00000307534 6976 ntTSL 1 (best) BASIC20.75■□□□□ 0.91
PCDH9Q9HC56 MTMR14-201ENST00000296003 2494 ntAPPRIS P4 TSL 1 (best) BASIC20.75■□□□□ 0.91
PCDH9Q9HC56 LBX2-AS1-202ENST00000603175 2083 ntBASIC20.75■□□□□ 0.91
PCDH9Q9HC56 SLC22A15-201ENST00000369502 1230 ntTSL 2 BASIC20.75■□□□□ 0.91
PCDH9Q9HC56 AC062017.1-203ENST00000413029 455 ntTSL 2 BASIC20.75■□□□□ 0.91
PCDH9Q9HC56 LINC01117-201ENST00000443670 699 ntTSL 5 BASIC20.75■□□□□ 0.91
PCDH9Q9HC56 AC008750.8-201ENST00000600067 551 ntAPPRIS P1 TSL 5 BASIC20.75■□□□□ 0.91
PCDH9Q9HC56 POU5F1-209ENST00000638788 369 ntTSL 5 BASIC20.75■□□□□ 0.91
PCDH9Q9HC56 AC093762.2-201ENST00000641700 291 ntAPPRIS P1 BASIC20.75■□□□□ 0.91
PCDH9Q9HC56 GPR35-201ENST00000319838 2249 ntAPPRIS P3 TSL 2 BASIC20.75■□□□□ 0.91
PCDH9Q9HC56 IL17RE-206ENST00000454190 2757 ntTSL 2 BASIC20.75■□□□□ 0.91
PCDH9Q9HC56 CHP2-201ENST00000300113 2382 ntAPPRIS P1 TSL 1 (best) BASIC20.75■□□□□ 0.91
PCDH9Q9HC56 INTS12-206ENST00000451321 1975 ntTSL 1 (best) BASIC20.75■□□□□ 0.91
PCDH9Q9HC56 ACBD4-204ENST00000431281 2026 ntTSL 5 BASIC20.75■□□□□ 0.91
PCDH9Q9HC56 AGAP3-202ENST00000397238 3225 ntAPPRIS P2 TSL 1 (best) BASIC20.74■□□□□ 0.91
PCDH9Q9HC56 C17orf62-204ENST00000437807 2242 ntAPPRIS P1 TSL 2 BASIC20.74■□□□□ 0.91
PCDH9Q9HC56 FGFR1-241ENST00000619564 5482 ntTSL 5 BASIC20.74■□□□□ 0.91
PCDH9Q9HC56 CNRIP1-201ENST00000263655 1953 ntAPPRIS P1 TSL 1 (best) BASIC20.74■□□□□ 0.91
PCDH9Q9HC56 UBXN11-201ENST00000314675 2254 ntAPPRIS ALT2 TSL 2 BASIC20.74■□□□□ 0.91
PCDH9Q9HC56 AC104581.1-201ENST00000324348 2852 ntAPPRIS P1 TSL 2 BASIC20.74■□□□□ 0.91
PCDH9Q9HC56 CFD-201ENST00000327726 1201 ntAPPRIS P3 TSL 1 (best) BASIC20.74■□□□□ 0.91
PCDH9Q9HC56 PRPS1-203ENST00000372428 1748 ntTSL 2 BASIC20.74■□□□□ 0.91
PCDH9Q9HC56 AL021707.1-201ENST00000416406 500 ntTSL 3 BASIC20.74■□□□□ 0.91
PCDH9Q9HC56 DALRD3-205ENST00000440857 2014 ntTSL 1 (best) BASIC20.74■□□□□ 0.91
PCDH9Q9HC56 VMO1-204ENST00000441199 741 ntTSL 2 BASIC20.74■□□□□ 0.91
PCDH9Q9HC56 CDC42SE2-206ENST00000503291 2025 ntTSL 1 (best) BASIC20.74■□□□□ 0.91
PCDH9Q9HC56 C11orf24-209ENST00000533310 980 ntAPPRIS ALT2 TSL 5 BASIC20.74■□□□□ 0.91
PCDH9Q9HC56 NEURL4-203ENST00000570460 4890 ntAPPRIS ALT2 TSL 5 BASIC20.74■□□□□ 0.91
PCDH9Q9HC56 AC069236.1-201ENST00000604339 616 ntBASIC20.74■□□□□ 0.91
PCDH9Q9HC56 SMARCD2-212ENST00000613943 2342 ntTSL 5 BASIC20.74■□□□□ 0.91
PCDH9Q9HC56 AL161421.1-201ENST00000619666 1101 ntTSL 1 (best) BASIC20.74■□□□□ 0.91
PCDH9Q9HC56 LHX3-202ENST00000371748 2365 ntTSL 1 (best) BASIC20.74■□□□□ 0.91
PCDH9Q9HC56 LONRF3-202ENST00000371628 2550 ntAPPRIS P1 TSL 1 (best) BASIC20.74■□□□□ 0.91
PCDH9Q9HC56 PI4KB-213ENST00000529142 2603 ntTSL 2 BASIC20.74■□□□□ 0.91
PCDH9Q9HC56 AC125437.2-201ENST00000625180 2167 ntBASIC20.73■□□□□ 0.91
PCDH9Q9HC56 GPR35-202ENST00000403859 2032 ntAPPRIS P3 TSL 2 BASIC20.73■□□□□ 0.91
PCDH9Q9HC56 MRM1-204ENST00000614766 1857 ntAPPRIS P1 TSL 1 (best) BASIC20.73■□□□□ 0.91
PCDH9Q9HC56 GALNT8-202ENST00000433855 5977 ntTSL 2 BASIC20.73■□□□□ 0.91
PCDH9Q9HC56 BX119927.1-201ENST00000636596 1552 ntBASIC20.73■□□□□ 0.91
PCDH9Q9HC56 MTHFS-201ENST00000258874 907 ntAPPRIS P1 TSL 1 (best) BASIC20.73■□□□□ 0.91
PCDH9Q9HC56 RNPS1-201ENST00000301730 1276 ntAPPRIS P1 TSL 2 BASIC20.73■□□□□ 0.91
PCDH9Q9HC56 ZNF644-203ENST00000361321 1253 ntTSL 2 BASIC20.73■□□□□ 0.91
PCDH9Q9HC56 DNAJC1-202ENST00000376980 2106 ntAPPRIS P1 TSL 1 (best) BASIC20.73■□□□□ 0.91
PCDH9Q9HC56 MIR663A-201ENST00000385250 93 ntBASIC20.73■□□□□ 0.91
PCDH9Q9HC56 C19orf81-201ENST00000425202 765 ntAPPRIS P2 TSL 5 BASIC20.73■□□□□ 0.91
Retrieved 100 of 98,524 protein–RNA pairs in 26.1 ms