Protein–RNA interactions for Protein: Q9H239

MMP28, Matrix metalloproteinase-28, humanhuman

Predictions only

Length 520 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
MMP28Q9H239 RNF114-201ENST00000244061 2503 ntAPPRIS P1 TSL 1 (best) BASIC17.69■□□□□ 0.42
MMP28Q9H239 MEN1-208ENST00000394374 3155 ntAPPRIS P3 TSL 5 BASIC17.69■□□□□ 0.42
MMP28Q9H239 RASA4CP-201ENST00000424092 1398 ntBASIC17.69■□□□□ 0.42
MMP28Q9H239 RAPGEF5-203ENST00000405243 2800 ntTSL 1 (best) BASIC17.69■□□□□ 0.42
MMP28Q9H239 EIPR1-206ENST00000443925 1771 ntTSL 3 BASIC17.69■□□□□ 0.42
MMP28Q9H239 ISOC1-201ENST00000173527 1940 ntAPPRIS P1 TSL 1 (best) BASIC17.69■□□□□ 0.42
MMP28Q9H239 IL4I1-201ENST00000341114 2349 ntAPPRIS P4 TSL 1 (best) BASIC17.69■□□□□ 0.42
MMP28Q9H239 AC005906.2-203ENST00000640962 2091 ntTSL 5 BASIC17.69■□□□□ 0.42
MMP28Q9H239 CTAG2-202ENST00000369585 748 ntAPPRIS P1 TSL 1 (best) BASIC17.69■□□□□ 0.42
MMP28Q9H239 ACAP1-206ENST00000571471 320 ntTSL 2 BASIC17.69■□□□□ 0.42
MMP28Q9H239 ACBD4-216ENST00000619916 1276 ntTSL 5 BASIC17.69■□□□□ 0.42
MMP28Q9H239 AL136967.2-201ENST00000623968 743 ntBASIC17.69■□□□□ 0.42
MMP28Q9H239 MEN1-209ENST00000394376 3034 ntAPPRIS P3 TSL 5 BASIC17.69■□□□□ 0.42
MMP28Q9H239 PTPA-206ENST00000358994 2664 ntAPPRIS P1 TSL 1 (best) BASIC17.69■□□□□ 0.42
MMP28Q9H239 MAPK8IP3-202ENST00000356010 4456 ntTSL 5 BASIC17.69■□□□□ 0.42
MMP28Q9H239 ZBTB10-205ENST00000610895 2833 ntAPPRIS ALT2 TSL 2 BASIC17.69■□□□□ 0.42
MMP28Q9H239 AL049812.1-201ENST00000432563 2267 ntBASIC17.69■□□□□ 0.42
MMP28Q9H239 ZNHIT2-201ENST00000310597 1306 ntAPPRIS P1 BASIC17.69■□□□□ 0.42
MMP28Q9H239 CAMKK1-202ENST00000348335 3563 ntAPPRIS P1 TSL 1 (best) BASIC17.69■□□□□ 0.42
MMP28Q9H239 NFE2L1-204ENST00000536222 2172 ntTSL 2 BASIC17.69■□□□□ 0.42
MMP28Q9H239 DR1-201ENST00000370267 1647 ntAPPRIS P1 TSL 2 BASIC17.69■□□□□ 0.42
MMP28Q9H239 PPP5C-202ENST00000391919 1929 ntTSL 5 BASIC17.68■□□□□ 0.42
MMP28Q9H239 NLGN2-204ENST00000575301 4374 ntAPPRIS P1 TSL 5 BASIC17.68■□□□□ 0.42
MMP28Q9H239 EDEM1-201ENST00000256497 6146 ntAPPRIS P1 TSL 1 (best) BASIC17.68■□□□□ 0.42
MMP28Q9H239 MGAT4D-208ENST00000515354 1806 ntTSL 3 BASIC17.68■□□□□ 0.42
MMP28Q9H239 LRRC27-203ENST00000368613 2113 ntAPPRIS P3 TSL 1 (best) BASIC17.68■□□□□ 0.42
MMP28Q9H239 EIF3J-201ENST00000261868 2569 ntAPPRIS P1 TSL 1 (best) BASIC17.68■□□□□ 0.42
MMP28Q9H239 SPSB4-201ENST00000310546 2908 ntAPPRIS P1 TSL 1 (best) BASIC17.68■□□□□ 0.42
MMP28Q9H239 PRMT2-204ENST00000397628 954 ntTSL 2 BASIC17.68■□□□□ 0.42
MMP28Q9H239 PACSIN2-203ENST00000402229 1883 ntAPPRIS P1 TSL 5 BASIC17.68■□□□□ 0.42
MMP28Q9H239 CKLF-205ENST00000417030 628 ntAPPRIS ALT2 TSL 4 BASIC17.68■□□□□ 0.42
MMP28Q9H239 GRAMD4P2-201ENST00000423297 1097 ntBASIC17.68■□□□□ 0.42
MMP28Q9H239 AC026271.2-201ENST00000428091 497 ntBASIC17.68■□□□□ 0.42
MMP28Q9H239 IGHV3-19-201ENST00000521488 291 ntBASIC17.68■□□□□ 0.42
MMP28Q9H239 MAG-206ENST00000597035 542 ntTSL 4 BASIC17.68■□□□□ 0.42
MMP28Q9H239 AC092666.2-201ENST00000613287 246 ntBASIC17.68■□□□□ 0.42
MMP28Q9H239 ARHGAP23-222ENST00000622683 5964 ntAPPRIS P2 TSL 5 BASIC17.68■□□□□ 0.42
MMP28Q9H239 SULF2-201ENST00000359930 4915 ntAPPRIS P4 TSL 1 (best) BASIC17.68■□□□□ 0.42
MMP28Q9H239 PKP3-201ENST00000331563 2809 ntAPPRIS P1 TSL 1 (best) BASIC17.68■□□□□ 0.42
MMP28Q9H239 KIF1BP-201ENST00000361983 2544 ntAPPRIS P1 TSL 1 (best) BASIC17.68■□□□□ 0.42
MMP28Q9H239 RBM26-202ENST00000438724 5152 ntAPPRIS ALT1 TSL 1 (best) BASIC17.68■□□□□ 0.42
MMP28Q9H239 MRPL37-202ENST00000360840 1483 ntAPPRIS P1 TSL 1 (best) BASIC17.68■□□□□ 0.42
MMP28Q9H239 ARNT-212ENST00000515192 2892 ntTSL 1 (best) BASIC17.68■□□□□ 0.42
MMP28Q9H239 MAPKAPK3-208ENST00000621469 2563 ntAPPRIS P1 TSL 1 (best) BASIC17.68■□□□□ 0.42
MMP28Q9H239 RELB-207ENST00000625761 2279 ntAPPRIS ALT2 TSL 5 BASIC17.68■□□□□ 0.42
MMP28Q9H239 DNAJC1-202ENST00000376980 2106 ntAPPRIS P1 TSL 1 (best) BASIC17.68■□□□□ 0.42
MMP28Q9H239 DGKI-202ENST00000424189 4163 ntAPPRIS ALT2 TSL 5 BASIC17.68■□□□□ 0.42
MMP28Q9H239 BLOC1S3-201ENST00000433642 2601 ntAPPRIS P1 TSL 2 BASIC17.68■□□□□ 0.42
MMP28Q9H239 ZNF622-201ENST00000308683 1699 ntAPPRIS P1 TSL 1 (best) BASIC17.67■□□□□ 0.42
MMP28Q9H239 S1PR5-204ENST00000617721 1698 ntTSL 5 BASIC17.67■□□□□ 0.42
MMP28Q9H239 SOGA3-203ENST00000525778 4077 ntAPPRIS P1 TSL 5 BASIC17.67■□□□□ 0.42
MMP28Q9H239 HR-202ENST00000381418 6336 ntAPPRIS P1 TSL 1 (best) BASIC17.67■□□□□ 0.42
MMP28Q9H239 FBLN7-202ENST00000331203 2301 ntAPPRIS P1 TSL 1 (best) BASIC17.67■□□□□ 0.42
MMP28Q9H239 RNF166-202ENST00000537718 1525 ntTSL 2 BASIC17.67■□□□□ 0.42
MMP28Q9H239 LDLRAD4-211ENST00000587757 2171 ntTSL 2 BASIC17.67■□□□□ 0.42
MMP28Q9H239 PTOV1-AS1-201ENST00000596521 2155 ntTSL 1 (best) BASIC17.67■□□□□ 0.42
MMP28Q9H239 PTPRJ-207ENST00000613246 7851 ntAPPRIS ALT2 TSL 5 BASIC17.67■□□□□ 0.42
MMP28Q9H239 ABHD13-201ENST00000375898 5338 ntAPPRIS P1 TSL 1 (best) BASIC17.67■□□□□ 0.42
MMP28Q9H239 MFSD7-209ENST00000515118 1556 ntTSL 5 BASIC17.67■□□□□ 0.42
MMP28Q9H239 GYG1-202ENST00000345003 2052 ntTSL 1 (best) BASIC17.67■□□□□ 0.42
MMP28Q9H239 LBX2-AS1-202ENST00000603175 2083 ntBASIC17.67■□□□□ 0.42
MMP28Q9H239 PHLDB3-201ENST00000292140 2591 ntAPPRIS P1 TSL 5 BASIC17.67■□□□□ 0.42
MMP28Q9H239 GTF2IRD2B-208ENST00000619142 1932 ntTSL 1 (best) BASIC17.67■□□□□ 0.42
MMP28Q9H239 CHPF-203ENST00000535926 2634 ntTSL 2 BASIC17.67■□□□□ 0.42
MMP28Q9H239 POLR3GL-201ENST00000369313 818 ntTSL 2 BASIC17.67■□□□□ 0.42
MMP28Q9H239 HOMER3-206ENST00000594439 982 ntTSL 1 (best) BASIC17.67■□□□□ 0.42
MMP28Q9H239 SYNGR3-206ENST00000618464 1213 ntTSL 1 (best) BASIC17.67■□□□□ 0.42
MMP28Q9H239 SIRT3-204ENST00000525319 1475 ntAPPRIS ALT2 TSL 2 BASIC17.67■□□□□ 0.42
MMP28Q9H239 KIF16B-206ENST00000636835 5109 ntAPPRIS ALT2 TSL 1 (best) BASIC17.67■□□□□ 0.42
MMP28Q9H239 PRR20B-201ENST00000377930 1847 ntAPPRIS P1 TSL 1 (best) BASIC17.67■□□□□ 0.42
MMP28Q9H239 PRR20A-201ENST00000377931 1847 ntAPPRIS P1 TSL 1 (best) BASIC17.67■□□□□ 0.42
MMP28Q9H239 PRR20E-201ENST00000434815 1847 ntAPPRIS P1 TSL 1 (best) BASIC17.67■□□□□ 0.42
MMP28Q9H239 PRR20D-201ENST00000452123 1847 ntAPPRIS P1 TSL 1 (best) BASIC17.67■□□□□ 0.42
MMP28Q9H239 PRR20C-201ENST00000544357 1847 ntAPPRIS P1 TSL 1 (best) BASIC17.67■□□□□ 0.42
MMP28Q9H239 PRR20C-202ENST00000614894 1847 ntAPPRIS P1 TSL 1 (best) BASIC17.67■□□□□ 0.42
MMP28Q9H239 HERPUD2-202ENST00000396081 3057 ntAPPRIS P1 TSL 1 (best) BASIC17.67■□□□□ 0.42
MMP28Q9H239 CCDC17-202ENST00000421127 2216 ntAPPRIS ALT2 TSL 2 BASIC17.67■□□□□ 0.42
MMP28Q9H239 ADORA2A-215ENST00000618076 2630 ntAPPRIS P1 TSL 1 (best) BASIC17.67■□□□□ 0.42
MMP28Q9H239 FBXO24-201ENST00000241071 2276 ntAPPRIS P1 TSL 1 (best) BASIC17.67■□□□□ 0.42
MMP28Q9H239 UBXN6-201ENST00000301281 1943 ntAPPRIS P1 TSL 1 (best) BASIC17.66■□□□□ 0.42
MMP28Q9H239 CDH5-204ENST00000563425 1932 ntTSL 5 BASIC17.66■□□□□ 0.42
MMP28Q9H239 FBXO27-201ENST00000292853 2330 ntAPPRIS P2 TSL 1 (best) BASIC17.66■□□□□ 0.42
MMP28Q9H239 ZNF274-212ENST00000617501 2538 ntAPPRIS P4 TSL 1 (best) BASIC17.66■□□□□ 0.42
MMP28Q9H239 XPA-201ENST00000375128 1417 ntAPPRIS P1 TSL 1 (best) BASIC17.66■□□□□ 0.42
MMP28Q9H239 PHPT1-201ENST00000247665 890 ntAPPRIS P1 TSL 1 (best) BASIC17.66■□□□□ 0.42
MMP28Q9H239 HSPE1-203ENST00000409729 478 ntTSL 2 BASIC17.66■□□□□ 0.42
MMP28Q9H239 DIRAS1-202ENST00000585334 774 ntAPPRIS P1 BASIC17.66■□□□□ 0.42
MMP28Q9H239 ABHD5-205ENST00000458276 1690 ntAPPRIS P1 TSL 1 (best) BASIC17.66■□□□□ 0.42
MMP28Q9H239 ITGA6-201ENST00000264107 5618 ntAPPRIS P1 TSL 1 (best) BASIC17.66■□□□□ 0.42
MMP28Q9H239 ACD-201ENST00000219251 2052 ntAPPRIS P3 TSL 2 BASIC17.66■□□□□ 0.42
MMP28Q9H239 NCLN-205ENST00000590671 2070 ntTSL 2 BASIC17.66■□□□□ 0.42
MMP28Q9H239 VMAC-201ENST00000339485 2254 ntAPPRIS P1 TSL 1 (best) BASIC17.66■□□□□ 0.42
MMP28Q9H239 WDR90-201ENST00000293879 5488 ntAPPRIS P2 TSL 5 BASIC17.66■□□□□ 0.42
MMP28Q9H239 SLC37A2-203ENST00000403796 2910 ntAPPRIS ALT1 TSL 2 BASIC17.66■□□□□ 0.42
MMP28Q9H239 C19orf25-207ENST00000588871 2128 ntTSL 5 BASIC17.66■□□□□ 0.42
MMP28Q9H239 MGAT1-204ENST00000427865 1919 ntAPPRIS P1 TSL 2 BASIC17.66■□□□□ 0.42
MMP28Q9H239 PIP4K2A-202ENST00000376573 3802 ntAPPRIS P1 TSL 1 (best) BASIC17.66■□□□□ 0.42
MMP28Q9H239 OXER1-201ENST00000378661 1781 ntAPPRIS P1 BASIC17.66■□□□□ 0.42
MMP28Q9H239 C12orf76-203ENST00000546651 1755 ntTSL 2 BASIC17.66■□□□□ 0.42
MMP28Q9H239 ZNF302-206ENST00000505242 2849 ntAPPRIS P3 TSL 1 (best) BASIC17.66■□□□□ 0.42
Retrieved 100 of 98,524 protein–RNA pairs in 32.8 ms