Protein–RNA interactions for Protein: Q9BXS0

COL25A1, Collagen alpha-1(XXV) chain, humanhuman

Predicted RBP Predictions only

Length 654 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL25A1Q9BXS0 CBWD2-204ENST00000433343 1411 ntTSL 1 (best) BASIC20.64■□□□□ 0.89
COL25A1Q9BXS0 KRT18P1-202ENST00000452408 1331 ntBASIC20.64■□□□□ 0.89
COL25A1Q9BXS0 CRELD2-204ENST00000407217 1230 ntAPPRIS ALT2 TSL 1 (best) BASIC20.64■□□□□ 0.89
COL25A1Q9BXS0 Z98884.1-201ENST00000451646 830 ntTSL 3 BASIC20.64■□□□□ 0.89
COL25A1Q9BXS0 C1QB-203ENST00000509305 1254 ntAPPRIS P1 TSL 1 (best) BASIC20.64■□□□□ 0.89
COL25A1Q9BXS0 NXNL2-205ENST00000618633 739 ntTSL 5 BASIC20.64■□□□□ 0.89
COL25A1Q9BXS0 CDKN1C-204ENST00000440480 1811 ntAPPRIS ALT2 TSL 1 (best) BASIC20.64■□□□□ 0.89
COL25A1Q9BXS0 SSTR3-202ENST00000617123 1781 ntAPPRIS P1 TSL 1 (best) BASIC20.64■□□□□ 0.89
COL25A1Q9BXS0 PICK1-202ENST00000404072 2164 ntAPPRIS P1 TSL 2 BASIC20.63■□□□□ 0.89
COL25A1Q9BXS0 NAPRT-204ENST00000449291 1965 ntAPPRIS P1 TSL 1 (best) BASIC20.63■□□□□ 0.89
COL25A1Q9BXS0 ZNF205-201ENST00000219091 1947 ntAPPRIS P1 TSL 5 BASIC20.63■□□□□ 0.89
COL25A1Q9BXS0 CSF1-203ENST00000369801 1364 ntTSL 1 (best) BASIC20.63■□□□□ 0.89
COL25A1Q9BXS0 RFT1-202ENST00000394738 1800 ntTSL 5 BASIC20.63■□□□□ 0.89
COL25A1Q9BXS0 KLHL7-201ENST00000322275 969 ntTSL 1 (best) BASIC20.63■□□□□ 0.89
COL25A1Q9BXS0 FAM187B-201ENST00000324675 1184 ntAPPRIS P1 TSL 1 (best) BASIC20.63■□□□□ 0.89
COL25A1Q9BXS0 VMO1-201ENST00000328739 766 ntAPPRIS P1 TSL 1 (best) BASIC20.63■□□□□ 0.89
COL25A1Q9BXS0 CLN3-202ENST00000355477 1173 ntTSL 1 (best) BASIC20.63■□□□□ 0.89
COL25A1Q9BXS0 NUS1P1-201ENST00000446295 882 ntBASIC20.63■□□□□ 0.89
COL25A1Q9BXS0 LY6E-213ENST00000522528 606 ntTSL 3 BASIC20.63■□□□□ 0.89
COL25A1Q9BXS0 AL732292.2-201ENST00000609649 430 ntBASIC20.63■□□□□ 0.89
COL25A1Q9BXS0 HACD3-205ENST00000562901 1797 ntTSL 5 BASIC20.63■□□□□ 0.89
COL25A1Q9BXS0 CCND3-203ENST00000372991 2085 ntAPPRIS P1 TSL 1 (best) BASIC20.63■□□□□ 0.89
COL25A1Q9BXS0 SRMS-201ENST00000217188 1516 ntAPPRIS P1 TSL 1 (best) BASIC20.63■□□□□ 0.89
COL25A1Q9BXS0 SLC25A29-215ENST00000556505 1540 ntTSL 2 BASIC20.63■□□□□ 0.89
COL25A1Q9BXS0 DNAJC21-201ENST00000342382 2309 ntAPPRIS P1 TSL 1 (best) BASIC20.62■□□□□ 0.89
COL25A1Q9BXS0 FASTK-212ENST00000482571 1764 ntTSL 1 (best) BASIC20.62■□□□□ 0.89
COL25A1Q9BXS0 BSCL2-201ENST00000278893 1364 ntAPPRIS ALT2 TSL 2 BASIC20.62■□□□□ 0.89
COL25A1Q9BXS0 HLA-A-201ENST00000376802 1334 ntBASIC20.62■□□□□ 0.89
COL25A1Q9BXS0 RARA-204ENST00000394089 2024 ntAPPRIS P1 TSL 2 BASIC20.62■□□□□ 0.89
COL25A1Q9BXS0 NGLY1-204ENST00000396649 2024 ntTSL 1 (best) BASIC20.62■□□□□ 0.89
COL25A1Q9BXS0 HOXA6-201ENST00000222728 989 ntAPPRIS P1 TSL 1 (best) BASIC20.62■□□□□ 0.89
COL25A1Q9BXS0 ALKBH6-201ENST00000252984 955 ntAPPRIS ALT2 TSL 1 (best) BASIC20.62■□□□□ 0.89
COL25A1Q9BXS0 DNTTIP1-201ENST00000372622 1290 ntAPPRIS P1 TSL 1 (best) BASIC20.62■□□□□ 0.89
COL25A1Q9BXS0 MIR564-202ENST00000385049 94 ntBASIC20.62■□□□□ 0.89
COL25A1Q9BXS0 AC002116.1-201ENST00000473572 1130 ntTSL 2 BASIC20.62■□□□□ 0.89
COL25A1Q9BXS0 AC010226.1-202ENST00000508517 539 ntTSL 2 BASIC20.62■□□□□ 0.89
COL25A1Q9BXS0 AC009477.2-201ENST00000635976 171 ntAPPRIS P1 BASIC20.62■□□□□ 0.89
COL25A1Q9BXS0 LINC00605-201ENST00000514902 1558 ntTSL 1 (best) BASIC20.62■□□□□ 0.89
COL25A1Q9BXS0 TMEM266-201ENST00000388942 2520 ntAPPRIS P1 TSL 5 BASIC20.62■□□□□ 0.89
COL25A1Q9BXS0 NFKBIL1-203ENST00000376148 1478 ntAPPRIS P1 TSL 1 (best) BASIC20.62■□□□□ 0.89
COL25A1Q9BXS0 ARHGEF35-201ENST00000378115 2431 ntAPPRIS P1 TSL 1 (best) BASIC20.62■□□□□ 0.89
COL25A1Q9BXS0 RFXANK-201ENST00000303088 1407 ntAPPRIS P1 TSL 1 (best) BASIC20.61■□□□□ 0.89
COL25A1Q9BXS0 GTPBP8-203ENST00000383678 1360 ntAPPRIS P1 TSL 1 (best) BASIC20.61■□□□□ 0.89
COL25A1Q9BXS0 ACBD4-214ENST00000591859 1998 ntTSL 1 (best) BASIC20.61■□□□□ 0.89
COL25A1Q9BXS0 NTMT1-203ENST00000372483 1315 ntAPPRIS P1 TSL 1 (best) BASIC20.61■□□□□ 0.89
COL25A1Q9BXS0 NTMT1-211ENST00000617943 1346 ntTSL 3 BASIC20.61■□□□□ 0.89
COL25A1Q9BXS0 LINC01786-202ENST00000453732 389 ntTSL 2 BASIC20.61■□□□□ 0.89
COL25A1Q9BXS0 DYNLL1-204ENST00000548214 616 ntTSL 2 BASIC20.61■□□□□ 0.89
COL25A1Q9BXS0 SLC1A6-202ENST00000430939 1794 ntTSL 2 BASIC20.6■□□□□ 0.89
COL25A1Q9BXS0 AP001062.3-201ENST00000422357 704 ntTSL 2 BASIC20.6■□□□□ 0.89
COL25A1Q9BXS0 MTG1-205ENST00000477902 1283 ntTSL 3 BASIC20.6■□□□□ 0.89
COL25A1Q9BXS0 AC139887.2-202ENST00000507446 534 ntTSL 4 BASIC20.6■□□□□ 0.89
COL25A1Q9BXS0 PENK-208ENST00000523051 772 ntTSL 5 BASIC20.6■□□□□ 0.89
COL25A1Q9BXS0 RPL8-207ENST00000528957 1015 ntAPPRIS P1 TSL 1 (best) BASIC20.6■□□□□ 0.89
COL25A1Q9BXS0 MIR3197-201ENST00000582241 73 ntBASIC20.6■□□□□ 0.89
COL25A1Q9BXS0 PLAUR-214ENST00000601723 1205 ntTSL 1 (best) BASIC20.6■□□□□ 0.89
COL25A1Q9BXS0 AL512343.2-201ENST00000609423 490 ntTSL 2 BASIC20.6■□□□□ 0.89
COL25A1Q9BXS0 HYMAI.1-201ENST00000620949 238 ntBASIC20.6■□□□□ 0.89
COL25A1Q9BXS0 PBX4-201ENST00000251203 1724 ntAPPRIS P1 TSL 1 (best) BASIC20.6■□□□□ 0.89
COL25A1Q9BXS0 RAB11FIP1-203ENST00000522727 1866 ntTSL 1 (best) BASIC20.6■□□□□ 0.89
COL25A1Q9BXS0 MAGI2-215ENST00000628980 6212 ntTSL 5 BASIC20.6■□□□□ 0.89
COL25A1Q9BXS0 GRK4-201ENST00000345167 2013 ntTSL 1 (best) BASIC20.6■□□□□ 0.89
COL25A1Q9BXS0 AZU1-201ENST00000233997 908 ntAPPRIS P1 TSL 1 (best) BASIC20.59■□□□□ 0.89
COL25A1Q9BXS0 DGCR6L-201ENST00000248879 1154 ntAPPRIS P1 TSL 1 (best) BASIC20.59■□□□□ 0.89
COL25A1Q9BXS0 SLC25A1P2-201ENST00000430693 912 ntBASIC20.59■□□□□ 0.89
COL25A1Q9BXS0 DMKN-215ENST00000451297 1111 ntAPPRIS ALT2 TSL 1 (best) BASIC20.59■□□□□ 0.89
COL25A1Q9BXS0 FAM172A-207ENST00000509739 1031 ntTSL 2 BASIC20.59■□□□□ 0.89
COL25A1Q9BXS0 HNF1B-206ENST00000620125 1103 ntTSL 5 BASIC20.59■□□□□ 0.89
COL25A1Q9BXS0 ANKRD65-204ENST00000520296 1632 ntTSL 1 (best) BASIC20.59■□□□□ 0.89
COL25A1Q9BXS0 LGALS9C-212ENST00000583322 1602 ntAPPRIS ALT1 TSL 5 BASIC20.59■□□□□ 0.89
COL25A1Q9BXS0 SCAMP3-201ENST00000302631 1446 ntAPPRIS P1 TSL 1 (best) BASIC20.59■□□□□ 0.89
COL25A1Q9BXS0 AC116050.2-201ENST00000612102 1779 ntBASIC20.59■□□□□ 0.89
COL25A1Q9BXS0 AGPAT2-205ENST00000538402 1357 ntAPPRIS P1 TSL 1 (best) BASIC20.59■□□□□ 0.89
COL25A1Q9BXS0 AC087742.1-201ENST00000575880 1738 ntBASIC20.58■□□□□ 0.89
COL25A1Q9BXS0 GOLGA7-201ENST00000357743 2027 ntAPPRIS P1 TSL 1 (best) BASIC20.58■□□□□ 0.89
COL25A1Q9BXS0 TANGO2-202ENST00000398042 2011 ntTSL 2 BASIC20.58■□□□□ 0.89
COL25A1Q9BXS0 C11orf96-202ENST00000528572 1834 ntBASIC20.58■□□□□ 0.89
COL25A1Q9BXS0 PTPA-202ENST00000347048 1989 ntTSL 1 (best) BASIC20.58■□□□□ 0.89
COL25A1Q9BXS0 EXOSC4-201ENST00000316052 887 ntAPPRIS P1 TSL 1 (best) BASIC20.58■□□□□ 0.89
COL25A1Q9BXS0 TSPY19P-201ENST00000418461 509 ntBASIC20.58■□□□□ 0.89
COL25A1Q9BXS0 AC005104.2-201ENST00000427818 678 ntBASIC20.58■□□□□ 0.89
COL25A1Q9BXS0 RNASEH1-AS1-202ENST00000438436 1218 ntTSL 1 (best) BASIC20.58■□□□□ 0.89
COL25A1Q9BXS0 AC074183.1-201ENST00000439105 782 ntTSL 5 BASIC20.58■□□□□ 0.89
COL25A1Q9BXS0 TSPY18P-201ENST00000441642 509 ntBASIC20.58■□□□□ 0.89
COL25A1Q9BXS0 AC097372.2-201ENST00000510996 732 ntTSL 3 BASIC20.58■□□□□ 0.89
COL25A1Q9BXS0 GCHFR-202ENST00000558467 785 ntTSL 2 BASIC20.58■□□□□ 0.89
COL25A1Q9BXS0 AL512604.3-201ENST00000569583 964 ntBASIC20.58■□□□□ 0.89
COL25A1Q9BXS0 MIR3180-1-201ENST00000580374 94 ntBASIC20.58■□□□□ 0.89
COL25A1Q9BXS0 MIR3180-3-201ENST00000584616 94 ntBASIC20.58■□□□□ 0.89
COL25A1Q9BXS0 CALM3-211ENST00000598871 561 ntTSL 4 BASIC20.58■□□□□ 0.89
COL25A1Q9BXS0 AC008567.3-202ENST00000619671 859 ntTSL 1 (best) BASIC20.58■□□□□ 0.89
COL25A1Q9BXS0 CEACAM3-208ENST00000630848 1110 ntAPPRIS ALT2 TSL 5 BASIC20.58■□□□□ 0.89
COL25A1Q9BXS0 LINC01311-201ENST00000565162 1445 ntBASIC20.58■□□□□ 0.88
COL25A1Q9BXS0 APBA3-201ENST00000316757 2075 ntAPPRIS P1 TSL 1 (best) BASIC20.58■□□□□ 0.88
COL25A1Q9BXS0 FRAT2-201ENST00000371019 2213 ntAPPRIS P1 BASIC20.58■□□□□ 0.88
COL25A1Q9BXS0 BBC3-203ENST00000439096 1838 ntAPPRIS P1 TSL 1 (best) BASIC20.57■□□□□ 0.88
COL25A1Q9BXS0 GNPTG-201ENST00000204679 1983 ntAPPRIS P1 TSL 1 (best) BASIC20.57■□□□□ 0.88
COL25A1Q9BXS0 ETFA-202ENST00000433983 1346 ntTSL 2 BASIC20.57■□□□□ 0.88
COL25A1Q9BXS0 TBCB-201ENST00000221855 1473 ntAPPRIS P1 TSL 1 (best) BASIC20.57■□□□□ 0.88
COL25A1Q9BXS0 CA9-201ENST00000378357 1618 ntAPPRIS P1 TSL 1 (best) BASIC20.57■□□□□ 0.88
Retrieved 100 of 98,524 protein–RNA pairs in 23.7 ms