Protein–RNA interactions for Protein: Q96QK1

VPS35, Vacuolar protein sorting-associated protein 35, humanhuman

Predictions only

Length 796 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VPS35Q96QK1 ASMTL-AS1-203ENST00000425740 840 ntTSL 2 BASIC19.96■□□□□ 0.79
VPS35Q96QK1 STPG4-207ENST00000445927 891 ntAPPRIS P1 TSL 5 BASIC19.96■□□□□ 0.79
VPS35Q96QK1 NCBP2-207ENST00000452404 1133 ntTSL 2 BASIC19.96■□□□□ 0.79
VPS35Q96QK1 CFL1-211ENST00000531407 1062 ntTSL 2 BASIC19.96■□□□□ 0.79
VPS35Q96QK1 LINC01578-208ENST00000557147 490 ntTSL 3 BASIC19.96■□□□□ 0.79
VPS35Q96QK1 FOXI1-202ENST00000449804 2011 ntTSL 1 (best) BASIC19.96■□□□□ 0.79
VPS35Q96QK1 ADRA1A-203ENST00000380572 1697 ntTSL 1 (best) BASIC19.96■□□□□ 0.79
VPS35Q96QK1 PLEKHB1-204ENST00000398494 2061 ntAPPRIS ALT1 TSL 1 (best) BASIC19.96■□□□□ 0.79
VPS35Q96QK1 AC083805.3-201ENST00000619560 1315 ntTSL 3 BASIC19.96■□□□□ 0.79
VPS35Q96QK1 SERPINB6-204ENST00000380529 1370 ntAPPRIS P1 TSL 2 BASIC19.95■□□□□ 0.79
VPS35Q96QK1 AC092368.3-202ENST00000574180 1591 ntBASIC19.95■□□□□ 0.78
VPS35Q96QK1 ARSE-205ENST00000540563 1990 ntTSL 2 BASIC19.95■□□□□ 0.78
VPS35Q96QK1 NKX6-1-202ENST00000515820 2194 ntTSL 3 BASIC19.95■□□□□ 0.78
VPS35Q96QK1 CIZ1-204ENST00000372938 2984 ntAPPRIS P3 TSL 1 (best) BASIC19.95■□□□□ 0.78
VPS35Q96QK1 NXN-201ENST00000336868 3036 ntAPPRIS P1 TSL 1 (best) BASIC19.95■□□□□ 0.78
VPS35Q96QK1 TTC39C-202ENST00000317571 2442 ntAPPRIS ALT2 TSL 1 (best) BASIC19.95■□□□□ 0.78
VPS35Q96QK1 MAFF-204ENST00000426621 2216 ntAPPRIS P1 TSL 4 BASIC19.95■□□□□ 0.78
VPS35Q96QK1 ADRA1B-201ENST00000306675 2047 ntAPPRIS P1 TSL 1 (best) BASIC19.95■□□□□ 0.78
VPS35Q96QK1 T-202ENST00000366871 2250 ntTSL 1 (best) BASIC19.95■□□□□ 0.78
VPS35Q96QK1 ZNF510-203ENST00000375231 5616 ntAPPRIS P1 TSL 1 (best) BASIC19.95■□□□□ 0.78
VPS35Q96QK1 BICRA-204ENST00000614245 5697 ntAPPRIS ALT2 TSL 5 BASIC19.95■□□□□ 0.78
VPS35Q96QK1 AC008667.2-201ENST00000504413 469 ntTSL 3 BASIC19.95■□□□□ 0.78
VPS35Q96QK1 PNMA6B-201ENST00000538162 1200 ntBASIC19.95■□□□□ 0.78
VPS35Q96QK1 TIMM50-213ENST00000599794 786 ntTSL 2 BASIC19.95■□□□□ 0.78
VPS35Q96QK1 WT1-211ENST00000639907 1545 ntAPPRIS ALT2 TSL 2 BASIC19.95■□□□□ 0.78
VPS35Q96QK1 RAVER2-201ENST00000294428 4398 ntAPPRIS ALT2 TSL 5 BASIC19.95■□□□□ 0.78
VPS35Q96QK1 PRAF2-202ENST00000553851 1334 ntAPPRIS P1 TSL 1 (best) BASIC19.95■□□□□ 0.78
VPS35Q96QK1 AC073314.1-201ENST00000568729 2216 ntBASIC19.95■□□□□ 0.78
VPS35Q96QK1 CCDC102A-201ENST00000258214 2463 ntAPPRIS P1 TSL 1 (best) BASIC19.95■□□□□ 0.78
VPS35Q96QK1 CIZ1-203ENST00000357558 2907 ntAPPRIS ALT2 TSL 5 BASIC19.95■□□□□ 0.78
VPS35Q96QK1 GSEC-202ENST00000629441 1572 ntTSL 2 BASIC19.95■□□□□ 0.78
VPS35Q96QK1 UBE2K-201ENST00000261427 5245 ntAPPRIS P1 TSL 1 (best) BASIC19.95■□□□□ 0.78
VPS35Q96QK1 RLBP1-201ENST00000268125 1810 ntAPPRIS P1 TSL 1 (best) BASIC19.95■□□□□ 0.78
VPS35Q96QK1 FGFR2-224ENST00000613048 4369 ntTSL 5 BASIC19.95■□□□□ 0.78
VPS35Q96QK1 MAPT-203ENST00000340799 5724 ntAPPRIS ALT2 TSL 1 (best) BASIC19.94■□□□□ 0.78
VPS35Q96QK1 DPP3P2-201ENST00000416030 1696 ntBASIC19.94■□□□□ 0.78
VPS35Q96QK1 KLHDC2-201ENST00000298307 5514 ntAPPRIS P1 TSL 1 (best) BASIC19.94■□□□□ 0.78
VPS35Q96QK1 MYO1D-213ENST00000583621 1916 ntTSL 1 (best) BASIC19.94■□□□□ 0.78
VPS35Q96QK1 HAUS4-202ENST00000342454 1474 ntTSL 1 (best) BASIC19.94■□□□□ 0.78
VPS35Q96QK1 LRR1-201ENST00000298288 1745 ntAPPRIS P1 TSL 1 (best) BASIC19.94■□□□□ 0.78
VPS35Q96QK1 KIRREL2-201ENST00000262625 1969 ntAPPRIS ALT2 TSL 1 (best) BASIC19.94■□□□□ 0.78
VPS35Q96QK1 TOR2A-203ENST00000373284 1523 ntAPPRIS P1 TSL 1 (best) BASIC19.94■□□□□ 0.78
VPS35Q96QK1 THAP7-201ENST00000215742 1213 ntAPPRIS P1 TSL 1 (best) BASIC19.94■□□□□ 0.78
VPS35Q96QK1 FBL-201ENST00000221801 1160 ntAPPRIS P1 TSL 1 (best) BASIC19.94■□□□□ 0.78
VPS35Q96QK1 IFI27L2-201ENST00000238609 511 ntAPPRIS P1 TSL 1 (best) BASIC19.94■□□□□ 0.78
VPS35Q96QK1 DGCR6L-202ENST00000405465 962 ntTSL 3 BASIC19.94■□□□□ 0.78
VPS35Q96QK1 RNA5SP413-201ENST00000516373 109 ntBASIC19.94■□□□□ 0.78
VPS35Q96QK1 CD99P1-205ENST00000527459 561 ntBASIC19.94■□□□□ 0.78
VPS35Q96QK1 MCRIP1-203ENST00000538396 925 ntAPPRIS P1 TSL 1 (best) BASIC19.94■□□□□ 0.78
VPS35Q96QK1 AC034102.6-201ENST00000550947 559 ntTSL 4 BASIC19.94■□□□□ 0.78
VPS35Q96QK1 PHF20L1-214ENST00000485595 1810 ntTSL 2 BASIC19.94■□□□□ 0.78
VPS35Q96QK1 KCNMA1-293ENST00000640969 5789 ntAPPRIS ALT2 TSL 5 BASIC19.94■□□□□ 0.78
VPS35Q96QK1 LMF1-212ENST00000568897 1603 ntTSL 5 BASIC19.94■□□□□ 0.78
VPS35Q96QK1 NPAS1-207ENST00000602189 1643 ntTSL 5 BASIC19.94■□□□□ 0.78
VPS35Q96QK1 PYURF-201ENST00000273968 1361 ntAPPRIS P1 TSL 1 (best) BASIC19.94■□□□□ 0.78
VPS35Q96QK1 DIAPH1-203ENST00000389057 5762 ntAPPRIS ALT2 TSL 5 BASIC19.94■□□□□ 0.78
VPS35Q96QK1 PPP1R36-201ENST00000298705 1405 ntAPPRIS P2 TSL 1 (best) BASIC19.93■□□□□ 0.78
VPS35Q96QK1 TNFRSF25-203ENST00000351959 1441 ntAPPRIS ALT2 TSL 1 (best) BASIC19.93■□□□□ 0.78
VPS35Q96QK1 SPATA22-210ENST00000573128 1704 ntAPPRIS P1 TSL 1 (best) BASIC19.93■□□□□ 0.78
VPS35Q96QK1 KCNE5-201ENST00000372101 1473 ntAPPRIS P1 BASIC19.93■□□□□ 0.78
VPS35Q96QK1 CAMKMT-201ENST00000378494 1495 ntAPPRIS P1 TSL 1 (best) BASIC19.93■□□□□ 0.78
VPS35Q96QK1 H19-201ENST00000411754 1788 ntTSL 5 BASIC19.93■□□□□ 0.78
VPS35Q96QK1 MAG-202ENST00000392213 2390 ntAPPRIS P4 TSL 1 (best) BASIC19.93■□□□□ 0.78
VPS35Q96QK1 FAM129C-212ENST00000601861 2180 ntAPPRIS ALT2 TSL 2 BASIC19.93■□□□□ 0.78
VPS35Q96QK1 GABARAPL3-202ENST00000624044 1851 ntBASIC19.93■□□□□ 0.78
VPS35Q96QK1 ZNF331-202ENST00000411977 2248 ntAPPRIS P1 TSL 1 (best) BASIC19.93■□□□□ 0.78
VPS35Q96QK1 ARL2-201ENST00000246747 979 ntAPPRIS P1 TSL 1 (best) BASIC19.93■□□□□ 0.78
VPS35Q96QK1 CKLF-201ENST00000264001 669 ntAPPRIS P4 TSL 1 (best) BASIC19.93■□□□□ 0.78
VPS35Q96QK1 MRAP-201ENST00000303645 935 ntAPPRIS P4 TSL 1 (best) BASIC19.93■□□□□ 0.78
VPS35Q96QK1 TTC9B-201ENST00000311308 843 ntAPPRIS P1 TSL 1 (best) BASIC19.93■□□□□ 0.78
VPS35Q96QK1 AC114730.1-201ENST00000400768 472 ntTSL 4 BASIC19.93■□□□□ 0.78
VPS35Q96QK1 GGT1-206ENST00000404223 952 ntTSL 2 BASIC19.93■□□□□ 0.78
VPS35Q96QK1 AC114730.2-201ENST00000417267 668 ntTSL 3 BASIC19.93■□□□□ 0.78
VPS35Q96QK1 ZNF467-202ENST00000484747 913 ntTSL 2 BASIC19.93■□□□□ 0.78
VPS35Q96QK1 NDUFB10-204ENST00000569148 628 ntTSL 2 BASIC19.93■□□□□ 0.78
VPS35Q96QK1 AC005829.2-201ENST00000571422 1056 ntBASIC19.93■□□□□ 0.78
VPS35Q96QK1 GGTLC2-204ENST00000613850 973 ntAPPRIS P1 TSL 1 (best) BASIC19.93■□□□□ 0.78
VPS35Q96QK1 GGTLC2-205ENST00000618722 1047 ntAPPRIS P1 TSL 1 (best) BASIC19.93■□□□□ 0.78
VPS35Q96QK1 TBCB-214ENST00000629269 413 ntTSL 5 BASIC19.93■□□□□ 0.78
VPS35Q96QK1 DUSP7-202ENST00000495880 3340 ntAPPRIS P1 TSL 1 (best) BASIC19.93■□□□□ 0.78
VPS35Q96QK1 LRRC14-201ENST00000292524 5328 ntAPPRIS P1 TSL 1 (best) BASIC19.93■□□□□ 0.78
VPS35Q96QK1 TEX45-201ENST00000361664 1679 ntAPPRIS P2 TSL 1 (best) BASIC19.93■□□□□ 0.78
VPS35Q96QK1 NEURL3-202ENST00000435380 1675 ntTSL 1 (best) BASIC19.93■□□□□ 0.78
VPS35Q96QK1 RAB1B-201ENST00000311481 2007 ntAPPRIS P1 TSL 1 (best) BASIC19.93■□□□□ 0.78
VPS35Q96QK1 CIZ1-206ENST00000372954 2731 ntAPPRIS ALT2 TSL 1 (best) BASIC19.93■□□□□ 0.78
VPS35Q96QK1 ZDHHC16-202ENST00000352634 1718 ntAPPRIS ALT1 TSL 1 (best) BASIC19.93■□□□□ 0.78
VPS35Q96QK1 KCNIP2-207ENST00000358038 2489 ntAPPRIS ALT1 TSL 1 (best) BASIC19.93■□□□□ 0.78
VPS35Q96QK1 XBP1-203ENST00000403532 1824 ntAPPRIS ALT1 TSL 3 BASIC19.92■□□□□ 0.78
VPS35Q96QK1 WASH6P-203ENST00000460206 1826 ntTSL 5 BASIC19.92■□□□□ 0.78
VPS35Q96QK1 RNF8-204ENST00000469731 1800 ntTSL 5 BASIC19.92■□□□□ 0.78
VPS35Q96QK1 PAQR4-201ENST00000293978 2644 ntTSL 2 BASIC19.92■□□□□ 0.78
VPS35Q96QK1 RNF32-207ENST00000405335 1938 ntAPPRIS P1 TSL 5 BASIC19.92■□□□□ 0.78
VPS35Q96QK1 KCNK17-201ENST00000373231 1658 ntAPPRIS P3 TSL 1 (best) BASIC19.92■□□□□ 0.78
VPS35Q96QK1 IPO13-201ENST00000372339 1201 ntTSL 2 BASIC19.92■□□□□ 0.78
VPS35Q96QK1 PYCR3-202ENST00000377579 985 ntTSL 2 BASIC19.92■□□□□ 0.78
VPS35Q96QK1 LRRC4B-201ENST00000389201 2958 ntAPPRIS P1 TSL 2 BASIC19.92■□□□□ 0.78
VPS35Q96QK1 AL807752.2-201ENST00000435463 301 ntTSL 3 BASIC19.92■□□□□ 0.78
VPS35Q96QK1 C5orf38-206ENST00000505778 509 ntAPPRIS ALT2 TSL 1 (best) BASIC19.92■□□□□ 0.78
VPS35Q96QK1 SMIM20-201ENST00000506197 935 ntAPPRIS P1 TSL 1 (best) BASIC19.92■□□□□ 0.78
VPS35Q96QK1 UNC93B5-201ENST00000530315 699 ntBASIC19.92■□□□□ 0.78
Retrieved 100 of 98,524 protein–RNA pairs in 38.4 ms