Protein–RNA interactions for Protein: Q96M19

LINC00477, Putative transmembrane protein encoded by LINC00477, humanhuman

Predictions only

Length 166 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LINC00477Q96M19 SNAP23-214ENST00000567094 834 ntTSL 3 BASIC15.05■□□□□ -0
LINC00477Q96M19 AP2S1-207ENST00000599990 829 ntAPPRIS ALT1 TSL 2 BASIC15.05■□□□□ -0
LINC00477Q96M19 TFG-210ENST00000620299 1289 ntTSL 5 BASIC15.05■□□□□ -0
LINC00477Q96M19 AC244517.4-202ENST00000624089 484 ntTSL 3 BASIC15.05■□□□□ -0
LINC00477Q96M19 AP001160.5-201ENST00000636508 485 ntAPPRIS P1 BASIC15.05■□□□□ -0
LINC00477Q96M19 MME-202ENST00000382989 1319 ntTSL 1 (best) BASIC15.05■□□□□ -0
LINC00477Q96M19 NPLOC4-201ENST00000331134 4415 ntAPPRIS P1 TSL 1 (best) BASIC15.05■□□□□ -0
LINC00477Q96M19 TMEM179-206ENST00000616017 1645 ntBASIC15.05■□□□□ -0
LINC00477Q96M19 ST6GAL2-203ENST00000409087 1657 ntTSL 1 (best) BASIC15.05■□□□□ -0
LINC00477Q96M19 FSCN2-202ENST00000417245 1665 ntAPPRIS P1 TSL 1 (best) BASIC15.05■□□□□ -0
LINC00477Q96M19 CPNE9-205ENST00000613455 1742 ntTSL 5 BASIC15.05■□□□□ -0
LINC00477Q96M19 LINC00482-201ENST00000332012 2023 ntTSL 1 (best) BASIC15.05■□□□□ -0
LINC00477Q96M19 CYP2A7-202ENST00000301146 2281 ntAPPRIS P1 TSL 1 (best) BASIC15.05■□□□□ -0
LINC00477Q96M19 ATOH8-201ENST00000306279 2438 ntAPPRIS P1 TSL 1 (best) BASIC15.05■□□□□ -0
LINC00477Q96M19 CDCA4-201ENST00000336219 2513 ntAPPRIS P1 TSL 1 (best) BASIC15.05■□□□□ -0
LINC00477Q96M19 CDH23-212ENST00000616684 4814 ntTSL 5 BASIC15.05■□□□□ -0
LINC00477Q96M19 KAZN-203ENST00000376030 6030 ntAPPRIS P1 TSL 5 BASIC15.04■□□□□ -0
LINC00477Q96M19 HCG11-201ENST00000411553 5696 ntBASIC15.04■□□□□ -0
LINC00477Q96M19 PCDH1-201ENST00000287008 4793 ntAPPRIS P3 TSL 5 BASIC15.04■□□□□ -0
LINC00477Q96M19 DYNC1LI2-201ENST00000258198 4515 ntAPPRIS P1 TSL 1 (best) BASIC15.04■□□□□ -0
LINC00477Q96M19 PELI3-202ENST00000349459 2783 ntAPPRIS P1 TSL 1 (best) BASIC15.04■□□□□ -0
LINC00477Q96M19 ZIM2-208ENST00000629319 2253 ntAPPRIS P1 TSL 5 BASIC15.04■□□□□ -0
LINC00477Q96M19 KCNC2-204ENST00000540018 2168 ntAPPRIS ALT2 TSL 2 BASIC15.04■□□□□ -0
LINC00477Q96M19 GPR35-202ENST00000403859 2032 ntAPPRIS P3 TSL 2 BASIC15.04■□□□□ -0
LINC00477Q96M19 DALRD3-201ENST00000313778 1968 ntTSL 2 BASIC15.04■□□□□ -0
LINC00477Q96M19 RAB11FIP4-201ENST00000394744 1968 ntTSL 2 BASIC15.04■□□□□ -0
LINC00477Q96M19 PCBP3-203ENST00000400308 1911 ntTSL 1 (best) BASIC15.04■□□□□ -0
LINC00477Q96M19 CD37-204ENST00000535669 1674 ntTSL 2 BASIC15.04■□□□□ -0
LINC00477Q96M19 CD247-201ENST00000362089 1609 ntAPPRIS P4 TSL 1 (best) BASIC15.04■□□□□ -0
LINC00477Q96M19 BX322557.1-202ENST00000400362 1460 ntTSL 1 (best) BASIC15.04■□□□□ -0
LINC00477Q96M19 IKBIP-203ENST00000393042 1368 ntTSL 1 (best) BASIC15.04■□□□□ -0
LINC00477Q96M19 UCN-201ENST00000296099 795 ntAPPRIS P1 TSL 1 (best) BASIC15.04■□□□□ -0
LINC00477Q96M19 TMEM61-201ENST00000371268 1097 ntAPPRIS P1 TSL 1 (best) BASIC15.04■□□□□ -0
LINC00477Q96M19 ABHD14A-204ENST00000491470 674 ntTSL 3 BASIC15.04■□□□□ -0
LINC00477Q96M19 CASP6-205ENST00000505486 538 ntTSL 4 BASIC15.04■□□□□ -0
LINC00477Q96M19 ORAI3-202ENST00000562699 628 ntTSL 2 BASIC15.04■□□□□ -0
LINC00477Q96M19 MYCNOS-205ENST00000641950 531 ntBASIC15.04■□□□□ -0
LINC00477Q96M19 NYX-202ENST00000378220 2297 ntAPPRIS P1 TSL 1 (best) BASIC15.04■□□□□ -0
LINC00477Q96M19 CCDC47-202ENST00000403162 2195 ntAPPRIS P1 TSL 2 BASIC15.04■□□□□ -0
LINC00477Q96M19 AC008105.1-201ENST00000587534 2003 ntTSL 2 BASIC15.04■□□□□ -0
LINC00477Q96M19 CNRIP1-201ENST00000263655 1953 ntAPPRIS P1 TSL 1 (best) BASIC15.04■□□□□ -0
LINC00477Q96M19 MTUS2-202ENST00000380808 1793 ntAPPRIS P3 TSL 1 (best) BASIC15.03■□□□□ -0
LINC00477Q96M19 INSM1-201ENST00000310227 2829 ntAPPRIS P1 BASIC15.03■□□□□ -0
LINC00477Q96M19 TUSC2-201ENST00000232496 1691 ntAPPRIS P1 TSL 1 (best) BASIC15.03■□□□□ -0
LINC00477Q96M19 GPR50-AS1-201ENST00000454196 1620 ntTSL 2 BASIC15.03■□□□□ -0
LINC00477Q96M19 HAND2-AS1-237ENST00000616485 2420 ntTSL 2 BASIC15.03■□□□□ -0
LINC00477Q96M19 ANTXR1-202ENST00000409349 1384 ntTSL 1 (best) BASIC15.03■□□□□ -0
LINC00477Q96M19 HOXA13-201ENST00000222753 5030 ntAPPRIS P1 TSL 1 (best) BASIC15.03■□□□□ -0
LINC00477Q96M19 SNAP91-211ENST00000520213 2168 ntTSL 1 (best) BASIC15.03■□□□□ -0
LINC00477Q96M19 TPSAB1-201ENST00000338844 1175 ntAPPRIS P2 TSL 1 (best) BASIC15.03■□□□□ -0
LINC00477Q96M19 P2RX2-204ENST00000351222 1140 ntTSL 1 (best) BASIC15.03■□□□□ -0
LINC00477Q96M19 FEZ1-205ENST00000524435 750 ntTSL 2 BASIC15.03■□□□□ -0
LINC00477Q96M19 AC140479.5-201ENST00000568189 735 ntTSL 3 BASIC15.03■□□□□ -0
LINC00477Q96M19 AL591742.1-201ENST00000604433 565 ntBASIC15.03■□□□□ -0
LINC00477Q96M19 AL356652.1-201ENST00000615962 565 ntBASIC15.03■□□□□ -0
LINC00477Q96M19 UBXN2A-201ENST00000309033 6066 ntAPPRIS P1 TSL 1 (best) BASIC15.03■□□□□ -0
LINC00477Q96M19 DPYSL5-202ENST00000401478 1972 ntAPPRIS P1 TSL 1 (best) BASIC15.03■□□□□ -0
LINC00477Q96M19 INTS12-206ENST00000451321 1975 ntTSL 1 (best) BASIC15.03■□□□□ -0
LINC00477Q96M19 ASPG-201ENST00000546892 1791 ntAPPRIS ALT2 TSL 1 (best) BASIC15.03■□□□□ -0
LINC00477Q96M19 PRPS1-203ENST00000372428 1748 ntTSL 2 BASIC15.03■□□□□ -0
LINC00477Q96M19 ZNF821-211ENST00000564134 1748 ntTSL 5 BASIC15.03■□□□□ -0
LINC00477Q96M19 IL17RC-202ENST00000383812 2384 ntAPPRIS ALT2 TSL 1 (best) BASIC15.03■□□□□ -0
LINC00477Q96M19 NPNT-214ENST00000514622 2362 ntTSL 2 BASIC15.03■□□□□ -0
LINC00477Q96M19 PITPNC1-201ENST00000299954 6359 ntAPPRIS ALT2 TSL 5 BASIC15.03■□□□□ -0
LINC00477Q96M19 FGFRL1-203ENST00000504138 1663 ntAPPRIS P1 TSL 1 (best) BASIC15.03■□□□□ -0
LINC00477Q96M19 RAC1-201ENST00000348035 2323 ntAPPRIS P1 TSL 1 (best) BASIC15.03■□□□□ -0
LINC00477Q96M19 FASTK-217ENST00000540185 1609 ntTSL 5 BASIC15.03■□□□□ -0
LINC00477Q96M19 AUH-202ENST00000375731 1577 ntAPPRIS P1 TSL 1 (best) BASIC15.02■□□□□ -0
LINC00477Q96M19 WAC-205ENST00000375664 5924 ntTSL 1 (best) BASIC15.02■□□□□ -0
LINC00477Q96M19 MORN1-202ENST00000378529 1500 ntAPPRIS ALT2 TSL 1 (best) BASIC15.02■□□□□ -0
LINC00477Q96M19 FGF14-IT1-202ENST00000607251 2123 ntTSL 2 BASIC15.02■□□□□ -0
LINC00477Q96M19 ENGASE-205ENST00000579016 2579 ntAPPRIS P1 TSL 1 (best) BASIC15.02■□□□□ -0
LINC00477Q96M19 AC138430.1-201ENST00000586064 5409 ntTSL 2 BASIC15.02■□□□□ -0
LINC00477Q96M19 DMPK-203ENST00000354227 1982 ntTSL 2 BASIC15.02■□□□□ -0
LINC00477Q96M19 FBXO41-205ENST00000521871 7336 ntAPPRIS P1 TSL 5 BASIC15.02■□□□□ -0
LINC00477Q96M19 AC005224.2-201ENST00000571192 1885 ntTSL 2 BASIC15.02■□□□□ -0
LINC00477Q96M19 MRPL37-201ENST00000336230 1179 ntTSL 1 (best) BASIC15.02■□□□□ -0
LINC00477Q96M19 PARP1-202ENST00000366792 553 ntTSL 3 BASIC15.02■□□□□ -0
LINC00477Q96M19 CCDC160-201ENST00000370809 1299 ntAPPRIS P1 TSL 5 BASIC15.02■□□□□ -0
LINC00477Q96M19 VMO1-204ENST00000441199 741 ntTSL 2 BASIC15.02■□□□□ -0
LINC00477Q96M19 LINC01659-202ENST00000449711 917 ntTSL 3 BASIC15.02■□□□□ -0
LINC00477Q96M19 PBX1-209ENST00000485769 834 ntTSL 2 BASIC15.02■□□□□ -0
LINC00477Q96M19 MIF4GD-211ENST00000580571 952 ntTSL 2 BASIC15.02■□□□□ -0
LINC00477Q96M19 AC016888.1-201ENST00000585285 565 ntTSL 3 BASIC15.02■□□□□ -0
LINC00477Q96M19 LINC01901-201ENST00000585822 1115 ntTSL 1 (best) BASIC15.02■□□□□ -0
LINC00477Q96M19 UBE2DNL-204ENST00000602536 740 ntBASIC15.02■□□□□ -0
LINC00477Q96M19 KDF1-201ENST00000320567 1793 ntAPPRIS P1 TSL 2 BASIC15.02□□□□□ -0.01
LINC00477Q96M19 H19-201ENST00000411754 1788 ntTSL 5 BASIC15.02□□□□□ -0.01
LINC00477Q96M19 ACAP3-201ENST00000353662 2280 ntTSL 1 (best) BASIC15.02□□□□□ -0.01
LINC00477Q96M19 GPR78-201ENST00000382487 1694 ntAPPRIS P1 TSL 1 (best) BASIC15.02□□□□□ -0.01
LINC00477Q96M19 DOK1-201ENST00000233668 2555 ntAPPRIS P1 TSL 1 (best) BASIC15.02□□□□□ -0.01
LINC00477Q96M19 MFSD10-206ENST00000508221 1639 ntTSL 5 BASIC15.02□□□□□ -0.01
LINC00477Q96M19 MORF4L2-AS1-201ENST00000435306 2086 ntTSL 1 (best) BASIC15.02□□□□□ -0.01
LINC00477Q96M19 NRXN1-226ENST00000626899 2543 ntTSL 2 BASIC15.02□□□□□ -0.01
LINC00477Q96M19 CBLN2-201ENST00000269503 2945 ntAPPRIS P1 TSL 1 (best) BASIC15.02□□□□□ -0.01
LINC00477Q96M19 ST7-OT4-201ENST00000397750 1576 ntTSL 1 (best) BASIC15.02□□□□□ -0.01
LINC00477Q96M19 PACRGL-208ENST00000503585 1582 ntAPPRIS P1 TSL 2 BASIC15.02□□□□□ -0.01
LINC00477Q96M19 BX119927.1-201ENST00000636596 1552 ntBASIC15.02□□□□□ -0.01
LINC00477Q96M19 IGFBP3-210ENST00000613132 2412 ntTSL 5 BASIC15.02□□□□□ -0.01
LINC00477Q96M19 PLSCR3-212ENST00000576201 1965 ntAPPRIS P1 TSL 1 (best) BASIC15.02□□□□□ -0.01
Retrieved 100 of 98,524 protein–RNA pairs in 11.7 ms