Protein–RNA interactions for Protein: Q8N1M1

BEST3, Bestrophin-3, humanhuman

Predictions only

Length 668 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
BEST3Q8N1M1 AC010173.1-201ENST00000549023 1453 ntTSL 2 BASIC18.66■□□□□ 0.58
BEST3Q8N1M1 P2RX4-202ENST00000337233 2032 ntAPPRIS P1 TSL 1 (best) BASIC18.66■□□□□ 0.58
BEST3Q8N1M1 UBA5-211ENST00000493720 2058 ntTSL 5 BASIC18.66■□□□□ 0.58
BEST3Q8N1M1 RITA1-201ENST00000548278 2053 ntAPPRIS P1 TSL 1 (best) BASIC18.66■□□□□ 0.58
BEST3Q8N1M1 MOK-233ENST00000524214 1539 ntTSL 2 BASIC18.66■□□□□ 0.58
BEST3Q8N1M1 RNF8-204ENST00000469731 1800 ntTSL 5 BASIC18.66■□□□□ 0.58
BEST3Q8N1M1 RNF5-203ENST00000375094 1168 ntAPPRIS P1 TSL 1 (best) BASIC18.66■□□□□ 0.58
BEST3Q8N1M1 NT5C3B-203ENST00000435506 975 ntAPPRIS P1 TSL 5 BASIC18.66■□□□□ 0.58
BEST3Q8N1M1 METTL21A-207ENST00000442521 1003 ntAPPRIS P1 TSL 2 BASIC18.66■□□□□ 0.58
BEST3Q8N1M1 FBXO27-202ENST00000509137 2130 ntAPPRIS P2 TSL 1 (best) BASIC18.66■□□□□ 0.58
BEST3Q8N1M1 THAP6-213ENST00000514480 1161 ntAPPRIS P3 TSL 1 (best) BASIC18.66■□□□□ 0.58
BEST3Q8N1M1 SEC23A-AS1-201ENST00000557350 500 ntTSL 3 BASIC18.66■□□□□ 0.58
BEST3Q8N1M1 AC007493.2-201ENST00000568427 478 ntTSL 3 BASIC18.66■□□□□ 0.58
BEST3Q8N1M1 AC005829.2-201ENST00000571422 1056 ntBASIC18.66■□□□□ 0.58
BEST3Q8N1M1 BX649632.1-201ENST00000610187 819 ntTSL 3 BASIC18.66■□□□□ 0.58
BEST3Q8N1M1 MIR2861-201ENST00000636310 90 ntBASIC18.66■□□□□ 0.58
BEST3Q8N1M1 MAML1-201ENST00000292599 5723 ntAPPRIS P1 TSL 1 (best) BASIC18.66■□□□□ 0.58
BEST3Q8N1M1 TRABD-204ENST00000395829 1628 ntAPPRIS ALT2 TSL 5 BASIC18.66■□□□□ 0.58
BEST3Q8N1M1 FAM19A4-201ENST00000295569 2292 ntAPPRIS P1 TSL 1 (best) BASIC18.66■□□□□ 0.58
BEST3Q8N1M1 SUMF2-204ENST00000395436 1683 ntAPPRIS ALT2 TSL 1 (best) BASIC18.66■□□□□ 0.58
BEST3Q8N1M1 OTUB1-209ENST00000538426 1729 ntAPPRIS P2 TSL 1 (best) BASIC18.66■□□□□ 0.58
BEST3Q8N1M1 RFXANK-201ENST00000303088 1407 ntAPPRIS P1 TSL 1 (best) BASIC18.66■□□□□ 0.58
BEST3Q8N1M1 WIPF1-205ENST00000409415 1772 ntTSL 1 (best) BASIC18.65■□□□□ 0.58
BEST3Q8N1M1 PPP3CC-201ENST00000240139 2189 ntAPPRIS P3 TSL 1 (best) BASIC18.65■□□□□ 0.58
BEST3Q8N1M1 FIP1L1-201ENST00000306932 1878 ntAPPRIS ALT2 TSL 1 (best) BASIC18.65■□□□□ 0.58
BEST3Q8N1M1 FUT4-201ENST00000358752 6059 ntAPPRIS P1 BASIC18.65■□□□□ 0.58
BEST3Q8N1M1 DLG3-201ENST00000194900 6112 ntAPPRIS ALT2 TSL 5 BASIC18.65■□□□□ 0.58
BEST3Q8N1M1 NDUFV3-202ENST00000354250 1575 ntTSL 1 (best) BASIC18.65■□□□□ 0.58
BEST3Q8N1M1 AC073130.3-201ENST00000624389 2278 ntBASIC18.65■□□□□ 0.58
BEST3Q8N1M1 ITGB1BP1-202ENST00000355346 1963 ntAPPRIS P1 TSL 1 (best) BASIC18.65■□□□□ 0.58
BEST3Q8N1M1 SMARCD2-203ENST00000448276 2716 ntAPPRIS P1 TSL 1 (best) BASIC18.65■□□□□ 0.58
BEST3Q8N1M1 CAVIN3-201ENST00000303927 1174 ntAPPRIS P1 TSL 1 (best) BASIC18.65■□□□□ 0.58
BEST3Q8N1M1 BOLA1-203ENST00000369153 1096 ntAPPRIS P1 TSL 3 BASIC18.65■□□□□ 0.58
BEST3Q8N1M1 AL390719.1-204ENST00000412397 1219 ntBASIC18.65■□□□□ 0.58
BEST3Q8N1M1 ZNF529-AS1-202ENST00000475219 1033 ntTSL 1 (best) BASIC18.65■□□□□ 0.58
BEST3Q8N1M1 FAM197Y4-202ENST00000622692 608 ntBASIC18.65■□□□□ 0.58
BEST3Q8N1M1 RIMBP3C-202ENST00000433039 5784 ntAPPRIS P2 BASIC18.65■□□□□ 0.58
BEST3Q8N1M1 LINC01123-202ENST00000419296 2436 ntTSL 2 BASIC18.65■□□□□ 0.58
BEST3Q8N1M1 ZDHHC16-202ENST00000352634 1718 ntAPPRIS ALT1 TSL 1 (best) BASIC18.65■□□□□ 0.58
BEST3Q8N1M1 RUNX3-202ENST00000338888 2629 ntAPPRIS ALT2 TSL 1 (best) BASIC18.65■□□□□ 0.58
BEST3Q8N1M1 GPAA1-202ENST00000361036 1840 ntTSL 1 (best) BASIC18.65■□□□□ 0.58
BEST3Q8N1M1 UXS1-203ENST00000409501 1839 ntAPPRIS P3 TSL 1 (best) BASIC18.65■□□□□ 0.58
BEST3Q8N1M1 PTGER3-212ENST00000628037 1815 ntAPPRIS ALT2 TSL 1 (best) BASIC18.65■□□□□ 0.58
BEST3Q8N1M1 ETV7-205ENST00000538992 1434 ntTSL 2 BASIC18.65■□□□□ 0.58
BEST3Q8N1M1 MAZ-214ENST00000568544 1464 ntTSL 2 BASIC18.65■□□□□ 0.58
BEST3Q8N1M1 DPYSL5-202ENST00000401478 1972 ntAPPRIS P1 TSL 1 (best) BASIC18.64■□□□□ 0.58
BEST3Q8N1M1 GPR162-203ENST00000428545 1610 ntTSL 1 (best) BASIC18.64■□□□□ 0.57
BEST3Q8N1M1 NSUN5-204ENST00000438747 1663 ntAPPRIS P4 TSL 1 (best) BASIC18.64■□□□□ 0.57
BEST3Q8N1M1 ST3GAL5-202ENST00000377332 2165 ntTSL 5 BASIC18.64■□□□□ 0.57
BEST3Q8N1M1 PALM-208ENST00000592155 2272 ntTSL 4 BASIC18.64■□□□□ 0.57
BEST3Q8N1M1 ROR1-201ENST00000371079 5832 ntAPPRIS P2 TSL 1 (best) BASIC18.64■□□□□ 0.57
BEST3Q8N1M1 VCPKMT-202ENST00000395860 1761 ntAPPRIS P1 TSL 1 (best) BASIC18.64■□□□□ 0.57
BEST3Q8N1M1 MRPL15-201ENST00000260102 1147 ntAPPRIS P1 TSL 1 (best) BASIC18.64■□□□□ 0.57
BEST3Q8N1M1 C11orf86-201ENST00000308963 1187 ntAPPRIS P1 TSL 2 BASIC18.64■□□□□ 0.57
BEST3Q8N1M1 UPK3B-203ENST00000394849 1041 ntAPPRIS ALT2 TSL 2 BASIC18.64■□□□□ 0.57
BEST3Q8N1M1 CHCHD10-201ENST00000401675 691 ntAPPRIS P1 TSL 5 BASIC18.64■□□□□ 0.57
BEST3Q8N1M1 NDUFB2-203ENST00000461457 559 ntTSL 3 BASIC18.64■□□□□ 0.57
BEST3Q8N1M1 RPPH1-201ENST00000516869 333 ntBASIC18.64■□□□□ 0.57
BEST3Q8N1M1 RNF121-214ENST00000533380 870 ntTSL 3 BASIC18.64■□□□□ 0.57
BEST3Q8N1M1 RN7SL471P-201ENST00000580476 299 ntBASIC18.64■□□□□ 0.57
BEST3Q8N1M1 CPEB1-218ENST00000620182 2422 ntTSL 2 BASIC18.64■□□□□ 0.57
BEST3Q8N1M1 CCDC102A-201ENST00000258214 2463 ntAPPRIS P1 TSL 1 (best) BASIC18.64■□□□□ 0.57
BEST3Q8N1M1 BABAM1-213ENST00000601043 1366 ntAPPRIS P3 TSL 2 BASIC18.64■□□□□ 0.57
BEST3Q8N1M1 NECAB3-201ENST00000246190 1989 ntTSL 5 BASIC18.64■□□□□ 0.57
BEST3Q8N1M1 KRT8P36-201ENST00000489121 1440 ntBASIC18.64■□□□□ 0.57
BEST3Q8N1M1 DYRK3-202ENST00000367108 2218 ntTSL 1 (best) BASIC18.64■□□□□ 0.57
BEST3Q8N1M1 PRRT4-207ENST00000535159 2897 ntAPPRIS P1 TSL 5 BASIC18.64■□□□□ 0.57
BEST3Q8N1M1 TNFRSF14-201ENST00000355716 1707 ntAPPRIS P2 TSL 1 (best) BASIC18.63■□□□□ 0.57
BEST3Q8N1M1 RPS6KL1-216ENST00000557413 2425 ntAPPRIS P1 TSL 5 BASIC18.63■□□□□ 0.57
BEST3Q8N1M1 DUSP5-201ENST00000369583 2557 ntAPPRIS P1 TSL 1 (best) BASIC18.63■□□□□ 0.57
BEST3Q8N1M1 TRIM4-202ENST00000354241 1942 ntTSL 1 (best) BASIC18.63■□□□□ 0.57
BEST3Q8N1M1 FDXR-204ENST00000442102 1967 ntTSL 2 BASIC18.63■□□□□ 0.57
BEST3Q8N1M1 STK11-205ENST00000586243 2777 ntAPPRIS ALT2 TSL 5 BASIC18.63■□□□□ 0.57
BEST3Q8N1M1 DTX3-201ENST00000337737 2029 ntAPPRIS P3 TSL 2 BASIC18.63■□□□□ 0.57
BEST3Q8N1M1 FBL-201ENST00000221801 1160 ntAPPRIS P1 TSL 1 (best) BASIC18.63■□□□□ 0.57
BEST3Q8N1M1 NDUFB1-201ENST00000329559 528 ntTSL 1 (best) BASIC18.63■□□□□ 0.57
BEST3Q8N1M1 FAM163B-202ENST00000496132 811 ntAPPRIS P1 TSL 3 BASIC18.63■□□□□ 0.57
BEST3Q8N1M1 TMEM9B-203ENST00000528117 949 ntTSL 2 BASIC18.63■□□□□ 0.57
BEST3Q8N1M1 RHOD-202ENST00000532559 538 ntTSL 3 BASIC18.63■□□□□ 0.57
BEST3Q8N1M1 PTCRA-204ENST00000616441 1125 ntAPPRIS ALT2 TSL 2 BASIC18.63■□□□□ 0.57
BEST3Q8N1M1 WDR37-203ENST00000381329 1307 ntTSL 1 (best) BASIC18.63■□□□□ 0.57
BEST3Q8N1M1 TSPAN14-203ENST00000372156 1380 ntAPPRIS P1 TSL 5 BASIC18.63■□□□□ 0.57
BEST3Q8N1M1 CD151-213ENST00000528011 1369 ntAPPRIS ALT1 TSL 5 BASIC18.63■□□□□ 0.57
BEST3Q8N1M1 TSSC4-207ENST00000451491 1423 ntAPPRIS P3 TSL 1 (best) BASIC18.63■□□□□ 0.57
BEST3Q8N1M1 PTGER3-203ENST00000354608 1470 ntAPPRIS ALT2 TSL 5 BASIC18.63■□□□□ 0.57
BEST3Q8N1M1 DBNDD2-206ENST00000372720 1481 ntTSL 1 (best) BASIC18.63■□□□□ 0.57
BEST3Q8N1M1 PLLP-201ENST00000219207 1512 ntAPPRIS P1 TSL 1 (best) BASIC18.63■□□□□ 0.57
BEST3Q8N1M1 HOXB2-201ENST00000330070 1562 ntAPPRIS P1 TSL 1 (best) BASIC18.63■□□□□ 0.57
BEST3Q8N1M1 ZNF282-203ENST00000479907 1815 ntTSL 2 BASIC18.63■□□□□ 0.57
BEST3Q8N1M1 DUSP7-202ENST00000495880 3340 ntAPPRIS P1 TSL 1 (best) BASIC18.62■□□□□ 0.57
BEST3Q8N1M1 DTWD2-203ENST00000510708 2307 ntAPPRIS P1 TSL 1 (best) BASIC18.62■□□□□ 0.57
BEST3Q8N1M1 LOXL1-AS1-210ENST00000567257 2358 ntTSL 2 BASIC18.62■□□□□ 0.57
BEST3Q8N1M1 AF106564.1-201ENST00000607058 2553 ntBASIC18.62■□□□□ 0.57
BEST3Q8N1M1 DBX2-201ENST00000332700 2806 ntAPPRIS P1 TSL 2 BASIC18.62■□□□□ 0.57
BEST3Q8N1M1 PNMA2-204ENST00000522362 4965 ntAPPRIS P1 TSL 1 (best) BASIC18.62■□□□□ 0.57
BEST3Q8N1M1 MZB1-201ENST00000302125 825 ntAPPRIS P1 TSL 1 (best) BASIC18.62■□□□□ 0.57
BEST3Q8N1M1 MCAT-202ENST00000327555 1134 ntTSL 1 (best) BASIC18.62■□□□□ 0.57
BEST3Q8N1M1 ODF3B-201ENST00000329363 970 ntAPPRIS P1 TSL 5 BASIC18.62■□□□□ 0.57
BEST3Q8N1M1 RER1-204ENST00000378518 522 ntTSL 3 BASIC18.62■□□□□ 0.57
BEST3Q8N1M1 LINC00708-201ENST00000428165 916 ntTSL 1 (best) BASIC18.62■□□□□ 0.57
Retrieved 100 of 98,524 protein–RNA pairs in 19.3 ms