Protein–RNA interactions for Protein: Q4VC31

CCDC58, Coiled-coil domain-containing protein 58, humanhuman

Predictions only

Length 144 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC58Q4VC31 RARRES2-201ENST00000223271 740 ntAPPRIS P1 TSL 1 (best) BASIC17.93■□□□□ 0.46
CCDC58Q4VC31 HES3-201ENST00000377898 697 ntAPPRIS P1 TSL 2 BASIC17.93■□□□□ 0.46
CCDC58Q4VC31 AL355987.3-201ENST00000456614 735 ntAPPRIS P1 TSL 4 BASIC17.93■□□□□ 0.46
CCDC58Q4VC31 AC008443.4-201ENST00000503314 456 ntTSL 4 BASIC17.93■□□□□ 0.46
CCDC58Q4VC31 TOLLIP-208ENST00000527938 549 ntTSL 4 BASIC17.93■□□□□ 0.46
CCDC58Q4VC31 P2RY11-201ENST00000321826 1943 ntAPPRIS P1 TSL 1 (best) BASIC17.93■□□□□ 0.46
CCDC58Q4VC31 NSDHL-201ENST00000370274 1929 ntAPPRIS P2 TSL 1 (best) BASIC17.93■□□□□ 0.46
CCDC58Q4VC31 UPF1-201ENST00000262803 5348 ntAPPRIS P1 TSL 1 (best) BASIC17.93■□□□□ 0.46
CCDC58Q4VC31 SLC41A3-201ENST00000315891 1797 ntTSL 1 (best) BASIC17.93■□□□□ 0.46
CCDC58Q4VC31 NBL1-209ENST00000548815 1953 ntAPPRIS P3 TSL 3 BASIC17.93■□□□□ 0.46
CCDC58Q4VC31 C11orf96-201ENST00000339446 1308 ntTSL 5 BASIC17.93■□□□□ 0.46
CCDC58Q4VC31 FMR1-AS1-202ENST00000596112 1845 ntTSL 1 (best) BASIC17.93■□□□□ 0.46
CCDC58Q4VC31 AC135782.1-201ENST00000537498 2154 ntTSL 2 BASIC17.93■□□□□ 0.46
CCDC58Q4VC31 MKRN1-208ENST00000474576 1661 ntTSL 5 BASIC17.93■□□□□ 0.46
CCDC58Q4VC31 KCNC4-203ENST00000413138 3018 ntAPPRIS ALT2 TSL 5 BASIC17.93■□□□□ 0.46
CCDC58Q4VC31 SHROOM1-202ENST00000378676 2352 ntAPPRIS ALT2 TSL 5 BASIC17.93■□□□□ 0.46
CCDC58Q4VC31 MTX2-201ENST00000249442 1364 ntAPPRIS P1 TSL 1 (best) BASIC17.92■□□□□ 0.46
CCDC58Q4VC31 RNF135-205ENST00000535306 2098 ntTSL 1 (best) BASIC17.92■□□□□ 0.46
CCDC58Q4VC31 TOLLIP-201ENST00000263646 2283 ntTSL 5 BASIC17.92■□□□□ 0.46
CCDC58Q4VC31 PI4KB-213ENST00000529142 2603 ntTSL 2 BASIC17.92■□□□□ 0.46
CCDC58Q4VC31 CMIP-209ENST00000566513 2288 ntTSL 5 BASIC17.92■□□□□ 0.46
CCDC58Q4VC31 HSPD1-202ENST00000388968 2455 ntAPPRIS P1 TSL 1 (best) BASIC17.92■□□□□ 0.46
CCDC58Q4VC31 GDF10-201ENST00000580279 2458 ntAPPRIS P1 TSL 1 (best) BASIC17.92■□□□□ 0.46
CCDC58Q4VC31 IGFALS-201ENST00000215539 2116 ntAPPRIS P1 TSL 1 (best) BASIC17.92■□□□□ 0.46
CCDC58Q4VC31 AIPL1-209ENST00000575265 2111 ntAPPRIS ALT2 TSL 1 (best) BASIC17.92■□□□□ 0.46
CCDC58Q4VC31 STAU2-229ENST00000524300 3065 ntAPPRIS P4 TSL 2 BASIC17.92■□□□□ 0.46
CCDC58Q4VC31 PSMD3-201ENST00000264639 2158 ntAPPRIS P1 TSL 1 (best) BASIC17.92■□□□□ 0.46
CCDC58Q4VC31 YIF1A-201ENST00000359461 943 ntTSL 2 BASIC17.92■□□□□ 0.46
CCDC58Q4VC31 IL20RA-202ENST00000367746 1244 ntTSL 2 BASIC17.92■□□□□ 0.46
CCDC58Q4VC31 YIF1A-203ENST00000376901 1124 ntAPPRIS P1 TSL 1 (best) BASIC17.92■□□□□ 0.46
CCDC58Q4VC31 AC092675.2-201ENST00000413274 541 ntTSL 4 BASIC17.92■□□□□ 0.46
CCDC58Q4VC31 AC012414.1-201ENST00000556676 535 ntBASIC17.92■□□□□ 0.46
CCDC58Q4VC31 FAM71E1-204ENST00000600100 1281 ntAPPRIS ALT2 TSL 1 (best) BASIC17.92■□□□□ 0.46
CCDC58Q4VC31 WASH6P-203ENST00000460206 1826 ntTSL 5 BASIC17.92■□□□□ 0.46
CCDC58Q4VC31 HACE1-202ENST00000369125 3102 ntTSL 2 BASIC17.92■□□□□ 0.46
CCDC58Q4VC31 PRKCI-201ENST00000295797 4950 ntAPPRIS P1 TSL 1 (best) BASIC17.92■□□□□ 0.46
CCDC58Q4VC31 ARNTL-201ENST00000389707 2776 ntAPPRIS P3 TSL 1 (best) BASIC17.92■□□□□ 0.46
CCDC58Q4VC31 CDH24-205ENST00000554034 2759 ntAPPRIS P1 TSL 1 (best) BASIC17.92■□□□□ 0.46
CCDC58Q4VC31 C19orf25-202ENST00000436106 2403 ntAPPRIS P1 TSL 1 (best) BASIC17.92■□□□□ 0.46
CCDC58Q4VC31 SH2B3-201ENST00000341259 5406 ntAPPRIS P1 TSL 1 (best) BASIC17.92■□□□□ 0.46
CCDC58Q4VC31 GYG1-202ENST00000345003 2052 ntTSL 1 (best) BASIC17.92■□□□□ 0.46
CCDC58Q4VC31 PYCR1-203ENST00000402252 1346 ntTSL 2 BASIC17.92■□□□□ 0.46
CCDC58Q4VC31 POLDIP2-202ENST00000618887 1524 ntTSL 2 BASIC17.92■□□□□ 0.46
CCDC58Q4VC31 LANCL3-201ENST00000378619 3063 ntAPPRIS P1 TSL 1 (best) BASIC17.92■□□□□ 0.46
CCDC58Q4VC31 UTP4-201ENST00000314423 2322 ntAPPRIS P1 TSL 1 (best) BASIC17.92■□□□□ 0.46
CCDC58Q4VC31 AC116050.2-201ENST00000612102 1779 ntBASIC17.91■□□□□ 0.46
CCDC58Q4VC31 ARNTL2-204ENST00000395901 1954 ntAPPRIS ALT2 TSL 1 (best) BASIC17.91■□□□□ 0.46
CCDC58Q4VC31 MFSD7-204ENST00000503156 1632 ntAPPRIS ALT2 TSL 5 BASIC17.91■□□□□ 0.46
CCDC58Q4VC31 PNKP-214ENST00000600573 1602 ntTSL 5 BASIC17.91■□□□□ 0.46
CCDC58Q4VC31 MSRB1-201ENST00000361871 1423 ntAPPRIS P2 TSL 1 (best) BASIC17.91■□□□□ 0.46
CCDC58Q4VC31 ANKRD9-201ENST00000286918 6727 ntAPPRIS P1 TSL 1 (best) BASIC17.91■□□□□ 0.46
CCDC58Q4VC31 C3orf18-203ENST00000426034 2486 ntAPPRIS P1 TSL 1 (best) BASIC17.91■□□□□ 0.46
CCDC58Q4VC31 AC138356.1-201ENST00000330539 2086 ntTSL 2 BASIC17.91■□□□□ 0.46
CCDC58Q4VC31 CTAG2-202ENST00000369585 748 ntAPPRIS P1 TSL 1 (best) BASIC17.91■□□□□ 0.46
CCDC58Q4VC31 PIGQ-209ENST00000470411 2112 ntTSL 1 (best) BASIC17.91■□□□□ 0.46
CCDC58Q4VC31 AC093762.1-201ENST00000641981 837 ntAPPRIS P1 BASIC17.91■□□□□ 0.46
CCDC58Q4VC31 IL11RA-201ENST00000318041 1728 ntAPPRIS P1 TSL 1 (best) BASIC17.91■□□□□ 0.46
CCDC58Q4VC31 FBLN1-204ENST00000402984 2355 ntTSL 5 BASIC17.91■□□□□ 0.46
CCDC58Q4VC31 ARID1B-202ENST00000346085 10194 ntAPPRIS ALT2 TSL 1 (best) BASIC17.91■□□□□ 0.46
CCDC58Q4VC31 AL691447.2-201ENST00000454869 2162 ntTSL 2 BASIC17.91■□□□□ 0.46
CCDC58Q4VC31 HOXC9-203ENST00000508190 1505 ntAPPRIS P1 TSL 3 BASIC17.91■□□□□ 0.46
CCDC58Q4VC31 ZSWIM5-201ENST00000359600 5819 ntAPPRIS P1 TSL 1 (best) BASIC17.91■□□□□ 0.46
CCDC58Q4VC31 GABRD-213ENST00000640067 1632 ntAPPRIS ALT2 TSL 5 BASIC17.9■□□□□ 0.46
CCDC58Q4VC31 FBXO27-201ENST00000292853 2330 ntAPPRIS P2 TSL 1 (best) BASIC17.9■□□□□ 0.46
CCDC58Q4VC31 NDOR1-203ENST00000427047 2315 ntTSL 2 BASIC17.9■□□□□ 0.46
CCDC58Q4VC31 CNIH3-201ENST00000272133 2558 ntAPPRIS P1 TSL 1 (best) BASIC17.9■□□□□ 0.46
CCDC58Q4VC31 NETO1-207ENST00000583169 2357 ntAPPRIS P1 TSL 1 (best) BASIC17.9■□□□□ 0.46
CCDC58Q4VC31 AC138649.1-201ENST00000619611 1449 ntTSL 1 (best) BASIC17.9■□□□□ 0.46
CCDC58Q4VC31 TMPRSS6-207ENST00000442782 1695 ntTSL 1 (best) BASIC17.9■□□□□ 0.46
CCDC58Q4VC31 NAT8L-201ENST00000331662 5571 ntTSL 1 (best) BASIC17.9■□□□□ 0.46
CCDC58Q4VC31 VSTM2A-203ENST00000404951 2521 ntTSL 5 BASIC17.9■□□□□ 0.46
CCDC58Q4VC31 ACAP3-201ENST00000353662 2280 ntTSL 1 (best) BASIC17.9■□□□□ 0.46
CCDC58Q4VC31 PAQR4-203ENST00000572687 2251 ntTSL 2 BASIC17.9■□□□□ 0.46
CCDC58Q4VC31 ASMTL-206ENST00000534940 2048 ntTSL 2 BASIC17.9■□□□□ 0.46
CCDC58Q4VC31 ARRB2-202ENST00000346341 1769 ntTSL 2 BASIC17.9■□□□□ 0.46
CCDC58Q4VC31 TSSC4-203ENST00000380996 1544 ntAPPRIS ALT2 TSL 1 (best) BASIC17.9■□□□□ 0.46
CCDC58Q4VC31 CHKB-AS1-201ENST00000380711 578 ntTSL 2 BASIC17.9■□□□□ 0.46
CCDC58Q4VC31 TMEM218-215ENST00000532407 1103 ntAPPRIS P1 TSL 1 (best) BASIC17.9■□□□□ 0.46
CCDC58Q4VC31 AC120498.10-201ENST00000621827 505 ntBASIC17.9■□□□□ 0.46
CCDC58Q4VC31 RETREG2-203ENST00000430297 4618 ntAPPRIS P1 TSL 1 (best) BASIC17.9■□□□□ 0.46
CCDC58Q4VC31 SMARCD2-212ENST00000613943 2342 ntTSL 5 BASIC17.9■□□□□ 0.46
CCDC58Q4VC31 HTRA4-201ENST00000302495 2095 ntAPPRIS P1 TSL 1 (best) BASIC17.9■□□□□ 0.46
CCDC58Q4VC31 MORF4L2-AS1-201ENST00000435306 2086 ntTSL 1 (best) BASIC17.9■□□□□ 0.46
CCDC58Q4VC31 C17orf58-204ENST00000580729 2065 ntTSL 5 BASIC17.9■□□□□ 0.46
CCDC58Q4VC31 AC135048.1-201ENST00000566056 1318 ntTSL 2 BASIC17.9■□□□□ 0.46
CCDC58Q4VC31 SDCBP-204ENST00000447182 2103 ntAPPRIS ALT1 TSL 1 (best) BASIC17.9■□□□□ 0.46
CCDC58Q4VC31 FOXP4-202ENST00000373057 3300 ntTSL 1 (best) BASIC17.9■□□□□ 0.46
CCDC58Q4VC31 RTKN-201ENST00000233330 2220 ntTSL 1 (best) BASIC17.9■□□□□ 0.46
CCDC58Q4VC31 VRK2-207ENST00000440705 1676 ntAPPRIS ALT2 TSL 1 (best) BASIC17.9■□□□□ 0.46
CCDC58Q4VC31 KLF2-201ENST00000248071 2018 ntAPPRIS P1 TSL 1 (best) BASIC17.89■□□□□ 0.46
CCDC58Q4VC31 SPR-201ENST00000234454 1480 ntAPPRIS P1 TSL 1 (best) BASIC17.89■□□□□ 0.45
CCDC58Q4VC31 LBX2-AS1-202ENST00000603175 2083 ntBASIC17.89■□□□□ 0.45
CCDC58Q4VC31 RUBCNL-203ENST00000378787 2731 ntTSL 2 BASIC17.89■□□□□ 0.45
CCDC58Q4VC31 POLD3-203ENST00000527458 2122 ntTSL 1 (best) BASIC17.89■□□□□ 0.45
CCDC58Q4VC31 UBE2QL1-201ENST00000399816 4317 ntAPPRIS P1 TSL 1 (best) BASIC17.89■□□□□ 0.45
CCDC58Q4VC31 RELL2-202ENST00000444782 2154 ntAPPRIS P1 TSL 1 (best) BASIC17.89■□□□□ 0.45
CCDC58Q4VC31 NUDT14-202ENST00000392568 845 ntAPPRIS P1 TSL 1 (best) BASIC17.89■□□□□ 0.45
CCDC58Q4VC31 POLR2H-204ENST00000438240 994 ntTSL 3 BASIC17.89■□□□□ 0.45
CCDC58Q4VC31 TPRG1LP1-201ENST00000598702 760 ntBASIC17.89■□□□□ 0.45
CCDC58Q4VC31 TFEB-211ENST00000420312 1996 ntTSL 5 BASIC17.89■□□□□ 0.45
Retrieved 100 of 98,524 protein–RNA pairs in 38.9 ms