Protein–RNA interactions for Protein: Q3V6T2

CCDC88A, Girdin, humanhuman

Predictions only

Length 1,871 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88AQ3V6T2 PSPH-202ENST00000395471 2178 ntAPPRIS P1 TSL 1 (best) BASIC24.8■■□□□ 1.56
CCDC88AQ3V6T2 DNAJC4-201ENST00000321460 1015 ntAPPRIS ALT2 TSL 1 (best) BASIC24.8■■□□□ 1.56
CCDC88AQ3V6T2 IGHV3-33-201ENST00000390615 431 ntAPPRIS P1 BASIC24.8■■□□□ 1.56
CCDC88AQ3V6T2 WDR45-218ENST00000473974 1077 ntTSL 5 BASIC24.8■■□□□ 1.56
CCDC88AQ3V6T2 TOLLIP-AS1-201ENST00000530897 939 ntBASIC24.8■■□□□ 1.56
CCDC88AQ3V6T2 IGHV3-30-201ENST00000603660 431 ntAPPRIS P1 BASIC24.8■■□□□ 1.56
CCDC88AQ3V6T2 NTAN1-211ENST00000622833 1049 ntTSL 2 BASIC24.8■■□□□ 1.56
CCDC88AQ3V6T2 NTAN1-212ENST00000624579 1115 ntTSL 2 BASIC24.8■■□□□ 1.56
CCDC88AQ3V6T2 KRT19-201ENST00000361566 1390 ntAPPRIS P1 TSL 1 (best) BASIC24.8■■□□□ 1.56
CCDC88AQ3V6T2 ODF3L2-202ENST00000382696 1393 ntAPPRIS ALT2 TSL 1 (best) BASIC24.8■■□□□ 1.56
CCDC88AQ3V6T2 MPV17L2-204ENST00000599612 1408 ntAPPRIS P1 TSL 1 (best) BASIC24.8■■□□□ 1.56
CCDC88AQ3V6T2 TMPRSS5-202ENST00000536856 1811 ntTSL 1 (best) BASIC24.8■■□□□ 1.56
CCDC88AQ3V6T2 PTGER3-204ENST00000356595 1943 ntAPPRIS P4 TSL 1 (best) BASIC24.8■■□□□ 1.56
CCDC88AQ3V6T2 PTGER3-207ENST00000370931 1914 ntAPPRIS ALT2 TSL 1 (best) BASIC24.8■■□□□ 1.56
CCDC88AQ3V6T2 FBXL12-205ENST00000586651 1736 ntTSL 1 (best) BASIC24.79■■□□□ 1.56
CCDC88AQ3V6T2 SNRPA-201ENST00000243563 1621 ntAPPRIS P1 TSL 1 (best) BASIC24.79■■□□□ 1.56
CCDC88AQ3V6T2 GNB2-206ENST00000424361 1478 ntTSL 5 BASIC24.79■■□□□ 1.56
CCDC88AQ3V6T2 PLCG1-AS1-201ENST00000454626 1462 ntTSL 1 (best) BASIC24.79■■□□□ 1.56
CCDC88AQ3V6T2 HBA1-201ENST00000320868 577 ntAPPRIS P1 TSL 1 (best) BASIC24.79■■□□□ 1.56
CCDC88AQ3V6T2 HES2-203ENST00000377837 1222 ntTSL 1 (best) BASIC24.79■■□□□ 1.56
CCDC88AQ3V6T2 SNCB-202ENST00000393693 1234 ntAPPRIS P1 TSL 1 (best) BASIC24.79■■□□□ 1.56
CCDC88AQ3V6T2 PRICKLE4-202ENST00000394260 1035 ntAPPRIS ALT2 TSL 2 BASIC24.79■■□□□ 1.56
CCDC88AQ3V6T2 PRICKLE4-203ENST00000394263 1155 ntAPPRIS P2 TSL 5 BASIC24.79■■□□□ 1.56
CCDC88AQ3V6T2 MCF2L-207ENST00000397024 490 ntTSL 5 BASIC24.79■■□□□ 1.56
CCDC88AQ3V6T2 PRKCB-209ENST00000498058 480 ntTSL 3 BASIC24.79■■□□□ 1.56
CCDC88AQ3V6T2 PTP4A3-206ENST00000524028 963 ntTSL 5 BASIC24.79■■□□□ 1.56
CCDC88AQ3V6T2 TMEM41B-203ENST00000527813 803 ntTSL 5 BASIC24.79■■□□□ 1.56
CCDC88AQ3V6T2 DHRS4-206ENST00000558581 1143 ntTSL 1 (best) BASIC24.79■■□□□ 1.56
CCDC88AQ3V6T2 FBXW11-203ENST00000393802 2181 ntTSL 1 (best) BASIC24.79■■□□□ 1.56
CCDC88AQ3V6T2 FARP2-223ENST00000627550 2122 ntTSL 2 BASIC24.79■■□□□ 1.56
CCDC88AQ3V6T2 POC1B-209ENST00000549035 2038 ntTSL 2 BASIC24.79■■□□□ 1.56
CCDC88AQ3V6T2 SMIM11B-205ENST00000624304 1863 ntAPPRIS P1 TSL 1 (best) BASIC24.79■■□□□ 1.56
CCDC88AQ3V6T2 AGAP3-201ENST00000335367 2675 ntTSL 1 (best) BASIC24.79■■□□□ 1.56
CCDC88AQ3V6T2 ANKRD2-201ENST00000298808 1350 ntTSL 1 (best) BASIC24.79■■□□□ 1.56
CCDC88AQ3V6T2 UBE2C-201ENST00000243893 476 ntTSL 2 BASIC24.79■■□□□ 1.56
CCDC88AQ3V6T2 AL162231.1-203ENST00000416454 465 ntAPPRIS ALT2 TSL 2 BASIC24.79■■□□□ 1.56
CCDC88AQ3V6T2 ZNF706-204ENST00000518336 501 ntAPPRIS P1 TSL 4 BASIC24.79■■□□□ 1.56
CCDC88AQ3V6T2 AL031600.3-201ENST00000566287 1124 ntTSL 5 BASIC24.79■■□□□ 1.56
CCDC88AQ3V6T2 PALM-207ENST00000590161 2137 ntTSL 4 BASIC24.79■■□□□ 1.56
CCDC88AQ3V6T2 RHBDD3-201ENST00000216085 1794 ntAPPRIS P1 TSL 1 (best) BASIC24.78■■□□□ 1.56
CCDC88AQ3V6T2 ATP5G2-201ENST00000338662 1792 ntTSL 2 BASIC24.78■■□□□ 1.56
CCDC88AQ3V6T2 PANO1-201ENST00000620120 1680 ntAPPRIS P1 BASIC24.78■■□□□ 1.56
CCDC88AQ3V6T2 RFC2-202ENST00000352131 1576 ntTSL 1 (best) BASIC24.78■■□□□ 1.56
CCDC88AQ3V6T2 ALG1L9P-201ENST00000508969 2165 ntTSL 1 (best) BASIC24.78■■□□□ 1.56
CCDC88AQ3V6T2 VCY1B-201ENST00000250823 550 ntAPPRIS P1 TSL 1 (best) BASIC24.78■■□□□ 1.56
CCDC88AQ3V6T2 VCY-201ENST00000250825 550 ntAPPRIS P1 TSL 1 (best) BASIC24.78■■□□□ 1.56
CCDC88AQ3V6T2 CRYGFP-201ENST00000418459 633 ntBASIC24.78■■□□□ 1.56
CCDC88AQ3V6T2 BX890604.1-205ENST00000425492 856 ntTSL 1 (best) BASIC24.78■■□□□ 1.56
CCDC88AQ3V6T2 AC015712.4-203ENST00000559673 630 ntTSL 3 BASIC24.78■■□□□ 1.56
CCDC88AQ3V6T2 SUMO2-203ENST00000578238 490 ntTSL 2 BASIC24.78■■□□□ 1.56
CCDC88AQ3V6T2 C8orf82-201ENST00000313465 2186 ntAPPRIS ALT2 TSL 1 (best) BASIC24.78■■□□□ 1.56
CCDC88AQ3V6T2 RBPJL-202ENST00000372741 1636 ntTSL 1 (best) BASIC24.78■■□□□ 1.56
CCDC88AQ3V6T2 RNF149-201ENST00000295317 2458 ntAPPRIS P1 TSL 1 (best) BASIC24.78■■□□□ 1.56
CCDC88AQ3V6T2 CNRIP1-201ENST00000263655 1953 ntAPPRIS P1 TSL 1 (best) BASIC24.78■■□□□ 1.56
CCDC88AQ3V6T2 B4GALT1-202ENST00000535206 1535 ntTSL 1 (best) BASIC24.78■■□□□ 1.56
CCDC88AQ3V6T2 AC008687.4-201ENST00000637680 1485 ntAPPRIS P1 TSL 5 BASIC24.78■■□□□ 1.56
CCDC88AQ3V6T2 PPP1R12B-212ENST00000480184 1808 ntTSL 1 (best) BASIC24.77■■□□□ 1.56
CCDC88AQ3V6T2 ETFA-202ENST00000433983 1346 ntTSL 2 BASIC24.77■■□□□ 1.56
CCDC88AQ3V6T2 C6orf48-206ENST00000375641 602 ntAPPRIS P1 TSL 2 BASIC24.77■■□□□ 1.56
CCDC88AQ3V6T2 UPK3BP1-201ENST00000428678 509 ntBASIC24.77■■□□□ 1.56
CCDC88AQ3V6T2 SURF4-206ENST00000485435 1206 ntTSL 1 (best) BASIC24.77■■□□□ 1.56
CCDC88AQ3V6T2 BAALC-AS1-207ENST00000522856 594 ntTSL 3 BASIC24.77■■□□□ 1.56
CCDC88AQ3V6T2 SLC39A2-203ENST00000554422 1259 ntTSL 1 (best) BASIC24.77■■□□□ 1.56
CCDC88AQ3V6T2 AMZ1-202ENST00000407112 1862 ntTSL 2 BASIC24.77■■□□□ 1.56
CCDC88AQ3V6T2 POLDIP2-202ENST00000618887 1524 ntTSL 2 BASIC24.77■■□□□ 1.56
CCDC88AQ3V6T2 AC027702.1-201ENST00000563810 1770 ntBASIC24.77■■□□□ 1.56
CCDC88AQ3V6T2 LINC00511-201ENST00000453722 1716 ntTSL 2 BASIC24.77■■□□□ 1.56
CCDC88AQ3V6T2 NAAA-201ENST00000286733 1900 ntAPPRIS P2 TSL 5 BASIC24.77■■□□□ 1.56
CCDC88AQ3V6T2 ST3GAL5-268ENST00000640982 2465 ntAPPRIS ALT2 TSL 5 BASIC24.77■■□□□ 1.56
CCDC88AQ3V6T2 TMEM171-201ENST00000287773 1247 ntAPPRIS ALT1 TSL 5 BASIC24.77■■□□□ 1.56
CCDC88AQ3V6T2 GPM6B-204ENST00000398361 1033 ntTSL 2 BASIC24.77■■□□□ 1.56
CCDC88AQ3V6T2 LINC00894-209ENST00000458274 547 ntTSL 2 BASIC24.77■■□□□ 1.56
CCDC88AQ3V6T2 NAPSB-206ENST00000562112 1266 ntBASIC24.77■■□□□ 1.56
CCDC88AQ3V6T2 AC087388.1-201ENST00000571370 1112 ntBASIC24.77■■□□□ 1.56
CCDC88AQ3V6T2 EP400NL-214ENST00000641289 2402 ntBASIC24.76■■□□□ 1.55
CCDC88AQ3V6T2 DYM-203ENST00000442713 2147 ntTSL 2 BASIC24.76■■□□□ 1.55
CCDC88AQ3V6T2 ZNF800-208ENST00000619291 2099 ntTSL 5 BASIC24.76■■□□□ 1.55
CCDC88AQ3V6T2 CDKN1C-203ENST00000430149 1570 ntAPPRIS P3 TSL 1 (best) BASIC24.76■■□□□ 1.55
CCDC88AQ3V6T2 WDR37-203ENST00000381329 1307 ntTSL 1 (best) BASIC24.76■■□□□ 1.55
CCDC88AQ3V6T2 LSR-204ENST00000361790 2210 ntAPPRIS P4 TSL 1 (best) BASIC24.76■■□□□ 1.55
CCDC88AQ3V6T2 TRIM54-202ENST00000380075 1967 ntAPPRIS P1 TSL 1 (best) BASIC24.76■■□□□ 1.55
CCDC88AQ3V6T2 BID-212ENST00000614949 1988 ntTSL 5 BASIC24.76■■□□□ 1.55
CCDC88AQ3V6T2 HES7-201ENST00000317814 678 ntAPPRIS P3 TSL 1 (best) BASIC24.76■■□□□ 1.55
CCDC88AQ3V6T2 NIFKP9-201ENST00000419265 221 ntBASIC24.76■■□□□ 1.55
CCDC88AQ3V6T2 F2R-202ENST00000505600 442 ntTSL 2 BASIC24.76■■□□□ 1.55
CCDC88AQ3V6T2 MIR2861-201ENST00000636310 90 ntBASIC24.76■■□□□ 1.55
CCDC88AQ3V6T2 MEF2A-207ENST00000558812 2186 ntTSL 2 BASIC24.76■■□□□ 1.55
CCDC88AQ3V6T2 PAX1-202ENST00000444366 1850 ntAPPRIS ALT2 TSL 2 BASIC24.76■■□□□ 1.55
CCDC88AQ3V6T2 TRAM2-AS1-204ENST00000606714 2453 ntTSL 2 BASIC24.76■■□□□ 1.55
CCDC88AQ3V6T2 TEAD2-208ENST00000598810 2191 ntTSL 1 (best) BASIC24.75■■□□□ 1.55
CCDC88AQ3V6T2 AP001922.1-201ENST00000499390 1504 ntTSL 1 (best) BASIC24.75■■□□□ 1.55
CCDC88AQ3V6T2 RHOT1-205ENST00000545287 2516 ntAPPRIS P4 TSL 5 BASIC24.75■■□□□ 1.55
CCDC88AQ3V6T2 TTYH1-201ENST00000301194 2088 ntAPPRIS ALT1 TSL 1 (best) BASIC24.75■■□□□ 1.55
CCDC88AQ3V6T2 BIK-201ENST00000216115 953 ntAPPRIS P1 TSL 1 (best) BASIC24.75■■□□□ 1.55
CCDC88AQ3V6T2 ROPN1L-202ENST00000503804 1291 ntAPPRIS P1 TSL 2 BASIC24.75■■□□□ 1.55
CCDC88AQ3V6T2 AC140504.1-202ENST00000568222 652 ntTSL 5 BASIC24.75■■□□□ 1.55
CCDC88AQ3V6T2 DTWD1-202ENST00000403028 1584 ntAPPRIS P1 TSL 1 (best) BASIC24.75■■□□□ 1.55
CCDC88AQ3V6T2 SLC30A2-201ENST00000374276 2494 ntAPPRIS P1 TSL 1 (best) BASIC24.75■■□□□ 1.55
CCDC88AQ3V6T2 TYMS-201ENST00000323224 1327 ntTSL 1 (best) BASIC24.75■■□□□ 1.55
CCDC88AQ3V6T2 PGPEP1L-202ENST00000535714 1483 ntTSL 2 BASIC24.75■■□□□ 1.55
Retrieved 100 of 98,524 protein–RNA pairs in 32.3 ms