Protein–RNA interactions for Protein: Q01080

RPA49, DNA-directed RNA polymerase I subunit RPA49, yeastyeast

Predicted RBP Predictions only

Length 415 aa.

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Protein RNA Prediction (catRAPID) Interaction (RIP-Chip)
Gene UniProt Accession Gene Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score Detected Interaction
RPA49Q01080 YHL046W-AYHL046W-A 327 nt1.45□□□□□ -2.18
RPA49Q01080 YJL015CYJL015C 285 nt1.45□□□□□ -2.18
RPA49Q01080 YLR334CYLR334C 381 nt1.45□□□□□ -2.18
RPA49Q01080 YOR072W-AYOR072W-A 249 nt1.45□□□□□ -2.18
RPA49Q01080 POL5YEL055C 3069 nt1.45□□□□□ -2.18
RPA49Q01080 YGR109W-BYGR109W-B 4644 nt1.44□□□□□ -2.18
RPA49Q01080 YGR035CYGR035C 351 nt1.44□□□□□ -2.18
RPA49Q01080 YAR053WYAR053W 297 nt1.44□□□□□ -2.18
RPA49Q01080 YMR175W-AYMR175W-A 195 nt1.44□□□□□ -2.18
RPA49Q01080 YMR242W-AYMR242W-A 90 nt1.44□□□□□ -2.18
RPA49Q01080 YOR029WYOR029W 336 nt1.44□□□□□ -2.18
RPA49Q01080 ENV11YGR071C 2583 nt1.44□□□□□ -2.18
RPA49Q01080 INP2YMR163C 2118 nt1.43□□□□□ -2.18
RPA49Q01080 SSK2YNR031C 4740 nt1.43□□□□□ -2.18
RPA49Q01080 CDC25YLR310C 4770 nt1.43□□□□□ -2.18
RPA49Q01080 KAP122YGL016W 3246 nt1.43□□□□□ -2.18
RPA49Q01080 AZF1YOR113W 2745 nt1.43□□□□□ -2.18
RPA49Q01080 AIM44YPL158C 2277 nt1.42□□□□□ -2.18
RPA49Q01080 SCW11YGL028C 1629 nt1.42□□□□□ -2.18
RPA49Q01080 ATG31YDR022C 591 nt1.42□□□□□ -2.18
RPA49Q01080 YDR182W-AYDR182W-A 204 nt1.42□□□□□ -2.18
RPA49Q01080 RPL38YLR325C 237 nt1.42□□□□□ -2.18
RPA49Q01080 YML007C-AYML007C-A 111 nt1.42□□□□□ -2.18
RPA49Q01080 BIL1YOR304C-A 231 nt1.42□□□□□ -2.18
RPA49Q01080 YBR174CYBR174C 315 nt1.42□□□□□ -2.18
RPA49Q01080 EST2YLR318W 2655 nt1.42□□□□□ -2.18
RPA49Q01080 RIM20YOR275C 1986 nt1.41□□□□□ -2.18
RPA49Q01080 NPC2YDL046W 522 nt1.41□□□□□ -2.18
RPA49Q01080 tH(GUG)E1tH(GUG)E1 72 nt1.4□□□□□ -2.19
RPA49Q01080 tH(GUG)E2tH(GUG)E2 72 nt1.4□□□□□ -2.19
RPA49Q01080 tH(GUG)G1tH(GUG)G1 72 nt1.4□□□□□ -2.19
RPA49Q01080 tH(GUG)G2tH(GUG)G2 72 nt1.4□□□□□ -2.19
RPA49Q01080 tH(GUG)HtH(GUG)H 72 nt1.4□□□□□ -2.19
RPA49Q01080 tH(GUG)KtH(GUG)K 72 nt1.4□□□□□ -2.19
RPA49Q01080 tH(GUG)MtH(GUG)M 72 nt1.4□□□□□ -2.19
RPA49Q01080 YMR290W-AYMR290W-A 348 nt1.4□□□□□ -2.19
RPA49Q01080 YOL160WYOL160W 342 nt1.4□□□□□ -2.19
RPA49Q01080 YOR161W-BYOR161W-B 261 nt1.4□□□□□ -2.19
RPA49Q01080 YOR199WYOR199W 330 nt1.4□□□□□ -2.19
RPA49Q01080 YPL261CYPL261C 309 nt1.4□□□□□ -2.19
RPA49Q01080 PET127YOR017W 2403 nt1.4□□□□□ -2.19
RPA49Q01080 NUT1YGL151W 3399 nt1.39□□□□□ -2.19
RPA49Q01080 snR72snR72 98 nt1.39□□□□□ -2.19
RPA49Q01080 YPR002C-AYPR002C-A 198 nt1.39□□□□□ -2.19
RPA49Q01080 YSY6YBR162W-A 198 nt1.39□□□□□ -2.19
RPA49Q01080 MAD1YGL086W 2250 nt1.39□□□□□ -2.19
RPA49Q01080 YDL211CYDL211C 1119 nt1.38□□□□□ -2.19
RPA49Q01080 PCC1YKR095W-A 267 nt1.38□□□□□ -2.19
RPA49Q01080 PMD1YER132C 5262 nt1.38□□□□□ -2.19
RPA49Q01080 MPT5YGL178W 2580 nt1.37□□□□□ -2.19
RPA49Q01080 SLI15YBR156C 2097 nt1.37□□□□□ -2.19
RPA49Q01080 HMRA1YCR097W 381 nt1.37□□□□□ -2.19
RPA49Q01080 YDR426CYDR426C 378 nt1.37□□□□□ -2.19
RPA49Q01080 RPS20YHL015W 366 nt1.37□□□□□ -2.19
RPA49Q01080 YJL135WYJL135W 318 nt1.37□□□□□ -2.19
RPA49Q01080 PIK1YNL267W 3201 nt1.37□□□□□ -2.19
RPA49Q01080 YGR130CYGR130C 2451 nt1.37□□□□□ -2.19
RPA49Q01080 HKR1YDR420W 5409 nt1.36□□□□□ -2.19
RPA49Q01080 YBR012CYBR012C 420 nt1.36□□□□□ -2.19
RPA49Q01080 IML1YJR138W 4755 nt1.36□□□□□ -2.19
RPA49Q01080 MDS3YGL197W 4464 nt1.35□□□□□ -2.19
RPA49Q01080 PIP2YOR363C 2991 nt1.35□□□□□ -2.19
RPA49Q01080 SPT21YMR179W 2277 nt1.35□□□□□ -2.19
RPA49Q01080 SEC21YNL287W 2808 nt1.34□□□□□ -2.19
RPA49Q01080 LCD1YDR499W 2244 nt1.34□□□□□ -2.19
RPA49Q01080 MSN5YDR335W 3675 nt1.34□□□□□ -2.2
RPA49Q01080 FYV8YGR196C 2454 nt1.33□□□□□ -2.2
RPA49Q01080 snR56snR56 88 nt1.33□□□□□ -2.2
RPA49Q01080 RAD34YDR314C 2079 nt1.33□□□□□ -2.2
RPA49Q01080 TRM732YMR259C 4263 nt1.32□□□□□ -2.2
RPA49Q01080 MMS4YBR098W 2076 nt1.32□□□□□ -2.2
RPA49Q01080 tW(UCA)QtW(UCA)Q 74 nt1.32□□□□□ -2.2
RPA49Q01080 YIR044CYIR044C 186 nt1.32□□□□□ -2.2
RPA49Q01080 snR14snR14 160 nt1.32□□□□□ -2.2
RPA49Q01080 YPR197CYPR197C 564 nt1.32□□□□□ -2.2
RPA49Q01080 SEC3YER008C 4011 nt1.32□□□□□ -2.2
RPA49Q01080 SWI4YER111C 3282 nt1.32□□□□□ -2.2
RPA49Q01080 YCS4YLR272C 3531 nt1.31□□□□□ -2.2
RPA49Q01080 CUL3YGR003W 2235 nt1.31□□□□□ -2.2
RPA49Q01080 COG4YPR105C 2586 nt1.31□□□□□ -2.2
RPA49Q01080 SPO75YLL005C 2607 nt1.31□□□□□ -2.2
RPA49Q01080 CSN9YDR179C 489 nt1.31□□□□□ -2.2
RPA49Q01080 YHR175W-AYHR175W-A 150 nt1.31□□□□□ -2.2
RPA49Q01080 GIM4YEL003W 336 nt1.3□□□□□ -2.2
RPA49Q01080 RRT15YLR162W-A 189 nt1.3□□□□□ -2.2
RPA49Q01080 RPL33BYOR234C 324 nt1.3□□□□□ -2.2
RPA49Q01080 YPR016W-AYPR016W-A 261 nt1.3□□□□□ -2.2
RPA49Q01080 PKH2YOL100W 3246 nt1.3□□□□□ -2.2
RPA49Q01080 AHC1YOR023C 1701 nt1.29□□□□□ -2.2
RPA49Q01080 FIG4YNL325C 2640 nt1.29□□□□□ -2.2
RPA49Q01080 NUP188YML103C 4968 nt1.29□□□□□ -2.2
RPA49Q01080 MAM33YIL070C 801 nt1.29□□□□□ -2.2
RPA49Q01080 HTB2YBL002W 396 nt1.29□□□□□ -2.2
RPA49Q01080 YPR063CYPR063C 423 nt1.29□□□□□ -2.2
RPA49Q01080 YLR422WYLR422W 5799 nt1.29□□□□□ -2.2
RPA49Q01080 NUP145YGL092W 3954 nt1.28□□□□□ -2.2
RPA49Q01080 YLL020CYLL020C 306 nt1.28□□□□□ -2.2
RPA49Q01080 YPL038W-AYPL038W-A 192 nt1.28□□□□□ -2.2
RPA49Q01080 RSM22YKL155C 1887 nt1.28□□□□□ -2.2
RPA49Q01080 ALY2YJL084C 3141 nt1.27□□□□□ -2.21
Retrieved 100 of 7,029 protein–RNA pairs in 20.8 ms