Protein–RNA interactions for Protein: P58304

VSX2, Visual system homeobox 2, humanhuman

Predicted RBP Predictions only

Length 361 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VSX2P58304 WDR37-203ENST00000381329 1307 ntTSL 1 (best) BASIC19.25■□□□□ 0.67
VSX2P58304 PKMYT1-204ENST00000440027 2061 ntTSL 2 BASIC19.24■□□□□ 0.67
VSX2P58304 SMARCD2-203ENST00000448276 2716 ntAPPRIS P1 TSL 1 (best) BASIC19.24■□□□□ 0.67
VSX2P58304 OXER1-201ENST00000378661 1781 ntAPPRIS P1 BASIC19.24■□□□□ 0.67
VSX2P58304 TMEM98-206ENST00000579849 4434 ntAPPRIS P1 TSL 1 (best) BASIC19.24■□□□□ 0.67
VSX2P58304 NUDT10-201ENST00000356450 1917 ntAPPRIS P1 TSL 1 (best) BASIC19.24■□□□□ 0.67
VSX2P58304 LCE2A-201ENST00000368779 592 ntAPPRIS P1 TSL 1 (best) BASIC19.24■□□□□ 0.67
VSX2P58304 EGFL7-202ENST00000371698 1282 ntAPPRIS P1 TSL 1 (best) BASIC19.24■□□□□ 0.67
VSX2P58304 GGT1-206ENST00000404223 952 ntTSL 2 BASIC19.24■□□□□ 0.67
VSX2P58304 AC012146.1-202ENST00000413077 474 ntTSL 2 BASIC19.24■□□□□ 0.67
VSX2P58304 AC114730.2-201ENST00000417267 668 ntTSL 3 BASIC19.24■□□□□ 0.67
VSX2P58304 TNIK-208ENST00000465393 750 ntTSL 1 (best) BASIC19.24■□□□□ 0.67
VSX2P58304 SLC29A4P2-201ENST00000504749 1089 ntBASIC19.24■□□□□ 0.67
VSX2P58304 C5orf38-206ENST00000505778 509 ntAPPRIS ALT2 TSL 1 (best) BASIC19.24■□□□□ 0.67
VSX2P58304 AP003097.1-201ENST00000530657 1135 ntBASIC19.24■□□□□ 0.67
VSX2P58304 SPI1-204ENST00000533968 1290 ntTSL 1 (best) BASIC19.24■□□□□ 0.67
VSX2P58304 MMAB-206ENST00000540016 945 ntTSL 3 BASIC19.24■□□□□ 0.67
VSX2P58304 AC113189.1-201ENST00000570444 327 ntTSL 3 BASIC19.24■□□□□ 0.67
VSX2P58304 FAM32A-205ENST00000589852 1168 ntTSL 1 (best) BASIC19.24■□□□□ 0.67
VSX2P58304 GGTLC2-204ENST00000613850 973 ntAPPRIS P1 TSL 1 (best) BASIC19.24■□□□□ 0.67
VSX2P58304 GGTLC2-205ENST00000618722 1047 ntAPPRIS P1 TSL 1 (best) BASIC19.24■□□□□ 0.67
VSX2P58304 MFSD10-206ENST00000508221 1639 ntTSL 5 BASIC19.24■□□□□ 0.67
VSX2P58304 TSSC4-207ENST00000451491 1423 ntAPPRIS P3 TSL 1 (best) BASIC19.24■□□□□ 0.67
VSX2P58304 SUN1-220ENST00000457378 1309 ntTSL 1 (best) BASIC19.24■□□□□ 0.67
VSX2P58304 GORAB-201ENST00000367762 1699 ntTSL 1 (best) BASIC19.24■□□□□ 0.67
VSX2P58304 AC092720.2-201ENST00000602388 1665 ntBASIC19.24■□□□□ 0.67
VSX2P58304 GSPT1-203ENST00000439887 2509 ntAPPRIS ALT2 TSL 1 (best) BASIC19.23■□□□□ 0.67
VSX2P58304 OGG1-205ENST00000344629 1744 ntAPPRIS ALT2 TSL 1 (best) BASIC19.23■□□□□ 0.67
VSX2P58304 ORAI3-201ENST00000318663 2206 ntAPPRIS P1 TSL 1 (best) BASIC19.23■□□□□ 0.67
VSX2P58304 DENND6A-201ENST00000311128 4655 ntAPPRIS P1 TSL 1 (best) BASIC19.23■□□□□ 0.67
VSX2P58304 AC068473.1-201ENST00000317008 1111 ntTSL 2 BASIC19.23■□□□□ 0.67
VSX2P58304 RNF5-203ENST00000375094 1168 ntAPPRIS P1 TSL 1 (best) BASIC19.23■□□□□ 0.67
VSX2P58304 MRPS26-201ENST00000380325 1127 ntAPPRIS P1 TSL 1 (best) BASIC19.23■□□□□ 0.67
VSX2P58304 AC026366.1-201ENST00000488803 879 ntBASIC19.23■□□□□ 0.67
VSX2P58304 AC092849.2-201ENST00000492523 333 ntTSL 3 BASIC19.23■□□□□ 0.67
VSX2P58304 RPL17-204ENST00000579248 790 ntAPPRIS P1 TSL 2 BASIC19.23■□□□□ 0.67
VSX2P58304 ZNF264-205ENST00000599653 705 ntTSL 2 BASIC19.23■□□□□ 0.67
VSX2P58304 ADD3-AS1-204ENST00000627565 388 ntTSL 3 BASIC19.23■□□□□ 0.67
VSX2P58304 HIC1-207ENST00000619757 6711 ntTSL 1 (best) BASIC19.23■□□□□ 0.67
VSX2P58304 NEURL3-202ENST00000435380 1675 ntTSL 1 (best) BASIC19.23■□□□□ 0.67
VSX2P58304 P2RY11-201ENST00000321826 1943 ntAPPRIS P1 TSL 1 (best) BASIC19.23■□□□□ 0.67
VSX2P58304 RNF8-204ENST00000469731 1800 ntTSL 5 BASIC19.23■□□□□ 0.67
VSX2P58304 SLC25A46-202ENST00000447245 1575 ntTSL 2 BASIC19.23■□□□□ 0.67
VSX2P58304 AC005224.2-201ENST00000571192 1885 ntTSL 2 BASIC19.22■□□□□ 0.67
VSX2P58304 FBXO31-207ENST00000618298 1871 ntTSL 5 BASIC19.22■□□□□ 0.67
VSX2P58304 THEM6-201ENST00000336138 2259 ntAPPRIS P1 TSL 1 (best) BASIC19.22■□□□□ 0.67
VSX2P58304 ATF5-202ENST00000595125 1637 ntAPPRIS P1 TSL 2 BASIC19.22■□□□□ 0.67
VSX2P58304 TSPAN14-203ENST00000372156 1380 ntAPPRIS P1 TSL 5 BASIC19.22■□□□□ 0.67
VSX2P58304 CPNE9-202ENST00000383831 1751 ntTSL 5 BASIC19.22■□□□□ 0.67
VSX2P58304 NDUFAF6-203ENST00000396124 1798 ntAPPRIS P1 TSL 2 BASIC19.22■□□□□ 0.67
VSX2P58304 ARFGAP3-201ENST00000263245 2857 ntAPPRIS P1 TSL 1 (best) BASIC19.22■□□□□ 0.67
VSX2P58304 TACC3-213ENST00000617535 1693 ntTSL 5 BASIC19.22■□□□□ 0.67
VSX2P58304 MZB1-201ENST00000302125 825 ntAPPRIS P1 TSL 1 (best) BASIC19.22■□□□□ 0.67
VSX2P58304 C11orf86-201ENST00000308963 1187 ntAPPRIS P1 TSL 2 BASIC19.22■□□□□ 0.67
VSX2P58304 SERF1A-201ENST00000317633 963 ntAPPRIS P1 TSL 1 (best) BASIC19.22■□□□□ 0.67
VSX2P58304 PPP1R14A-202ENST00000347262 637 ntTSL 1 (best) BASIC19.22■□□□□ 0.67
VSX2P58304 AL390719.1-204ENST00000412397 1219 ntBASIC19.22■□□□□ 0.67
VSX2P58304 AC226101.2-201ENST00000458252 747 ntTSL 2 BASIC19.22■□□□□ 0.67
VSX2P58304 PDCD10-202ENST00000461494 934 ntAPPRIS P1 TSL 3 BASIC19.22■□□□□ 0.67
VSX2P58304 UNC93B4-201ENST00000505679 747 ntBASIC19.22■□□□□ 0.67
VSX2P58304 C17orf50-201ENST00000603305 569 ntTSL 3 BASIC19.22■□□□□ 0.67
VSX2P58304 C17orf50-203ENST00000605587 1018 ntAPPRIS P1 TSL 1 (best) BASIC19.22■□□□□ 0.67
VSX2P58304 AC006557.6-201ENST00000623071 864 ntBASIC19.22■□□□□ 0.67
VSX2P58304 RUNX3-202ENST00000338888 2629 ntAPPRIS ALT2 TSL 1 (best) BASIC19.22■□□□□ 0.67
VSX2P58304 MAG-202ENST00000392213 2390 ntAPPRIS P4 TSL 1 (best) BASIC19.22■□□□□ 0.67
VSX2P58304 FAM19A4-201ENST00000295569 2292 ntAPPRIS P1 TSL 1 (best) BASIC19.22■□□□□ 0.67
VSX2P58304 GRB10-206ENST00000402497 2289 ntTSL 5 BASIC19.22■□□□□ 0.67
VSX2P58304 DDX55-205ENST00000538744 1735 ntTSL 5 BASIC19.22■□□□□ 0.67
VSX2P58304 ISYNA1-201ENST00000338128 2420 ntAPPRIS P1 TSL 1 (best) BASIC19.22■□□□□ 0.67
VSX2P58304 AP005233.1-201ENST00000562341 2424 ntTSL 2 BASIC19.22■□□□□ 0.67
VSX2P58304 SLC38A8-201ENST00000299709 1308 ntAPPRIS P1 TSL 5 BASIC19.22■□□□□ 0.67
VSX2P58304 SNX32-201ENST00000308342 2003 ntAPPRIS P1 TSL 1 (best) BASIC19.22■□□□□ 0.67
VSX2P58304 IRF7-204ENST00000397570 1943 ntAPPRIS ALT2 TSL 1 (best) BASIC19.21■□□□□ 0.67
VSX2P58304 BX005266.2-202ENST00000446626 2245 ntTSL 1 (best) BASIC19.21■□□□□ 0.67
VSX2P58304 ZDHHC17-201ENST00000426126 5259 ntAPPRIS P1 TSL 1 (best) BASIC19.21■□□□□ 0.67
VSX2P58304 RELA-201ENST00000308639 2681 ntAPPRIS ALT1 TSL 1 (best) BASIC19.21■□□□□ 0.67
VSX2P58304 GPS2-201ENST00000380728 1379 ntAPPRIS P1 TSL 1 (best) BASIC19.21■□□□□ 0.67
VSX2P58304 SEC11A-201ENST00000268220 1656 ntAPPRIS P1 TSL 1 (best) BASIC19.21■□□□□ 0.67
VSX2P58304 DPP3P2-201ENST00000416030 1696 ntBASIC19.21■□□□□ 0.67
VSX2P58304 CDH5-202ENST00000539168 1672 ntTSL 2 BASIC19.21■□□□□ 0.67
VSX2P58304 ESRRA-202ENST00000405666 2283 ntAPPRIS P3 TSL 1 (best) BASIC19.21■□□□□ 0.67
VSX2P58304 MGAT4B-201ENST00000292591 2446 ntAPPRIS P1 TSL 1 (best) BASIC19.21■□□□□ 0.67
VSX2P58304 EFHD2-201ENST00000375980 2419 ntAPPRIS P1 TSL 1 (best) BASIC19.21■□□□□ 0.67
VSX2P58304 APPL2-201ENST00000258530 3239 ntAPPRIS P1 TSL 1 (best) BASIC19.21■□□□□ 0.67
VSX2P58304 CD99-203ENST00000381184 918 ntAPPRIS ALT2 TSL 5 BASIC19.21■□□□□ 0.67
VSX2P58304 OGG1-209ENST00000383826 1069 ntTSL 5 BASIC19.21■□□□□ 0.67
VSX2P58304 ZDHHC20-204ENST00000415724 1296 ntAPPRIS ALT2 TSL 5 BASIC19.21■□□□□ 0.67
VSX2P58304 MAGI2-AS3-202ENST00000422093 762 ntTSL 1 (best) BASIC19.21■□□□□ 0.67
VSX2P58304 MTMR9LP-202ENST00000423995 1878 ntTSL 2 BASIC19.21■□□□□ 0.67
VSX2P58304 SERTAD4-AS1-201ENST00000437764 726 ntTSL 1 (best) BASIC19.21■□□□□ 0.67
VSX2P58304 FOXI1-202ENST00000449804 2011 ntTSL 1 (best) BASIC19.21■□□□□ 0.67
VSX2P58304 DNAAF3-202ENST00000455045 2318 ntAPPRIS ALT2 TSL 1 (best) BASIC19.21■□□□□ 0.67
VSX2P58304 LCN6-203ENST00000476567 1015 ntTSL 1 (best) BASIC19.21■□□□□ 0.67
VSX2P58304 AC005829.2-201ENST00000571422 1056 ntBASIC19.21■□□□□ 0.67
VSX2P58304 EML2-AS1-202ENST00000591087 838 ntTSL 3 BASIC19.21■□□□□ 0.67
VSX2P58304 TARDBP-228ENST00000629725 1031 ntTSL 5 BASIC19.21■□□□□ 0.67
VSX2P58304 ZNF668-207ENST00000535577 2396 ntAPPRIS P1 TSL 5 BASIC19.21■□□□□ 0.67
VSX2P58304 METTL1-202ENST00000324871 2066 ntAPPRIS P1 TSL 1 (best) BASIC19.21■□□□□ 0.67
VSX2P58304 RGMA-210ENST00000557301 1929 ntAPPRIS ALT2 TSL 2 BASIC19.21■□□□□ 0.67
VSX2P58304 LMF1-212ENST00000568897 1603 ntTSL 5 BASIC19.21■□□□□ 0.67
Retrieved 100 of 98,524 protein–RNA pairs in 27.2 ms