Protein–RNA interactions for Protein: P56524

HDAC4, Histone deacetylase 4, humanhuman

Predictions only

Length 1,084 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HDAC4P56524 SLC35A3-222ENST00000640715 1989 ntTSL 5 BASIC21.03■□□□□ 0.96
HDAC4P56524 FBXL15-202ENST00000369956 2344 ntAPPRIS ALT1 TSL 1 (best) BASIC21.03■□□□□ 0.96
HDAC4P56524 GRK4-203ENST00000398052 2202 ntAPPRIS P1 TSL 1 (best) BASIC21.02■□□□□ 0.96
HDAC4P56524 DXO-202ENST00000375349 1667 ntAPPRIS P1 TSL 5 BASIC21.02■□□□□ 0.96
HDAC4P56524 SSH3-202ENST00000308298 2046 ntTSL 2 BASIC21.02■□□□□ 0.96
HDAC4P56524 ZNF652-202ENST00000430262 4701 ntAPPRIS P1 TSL 1 (best) BASIC21.02■□□□□ 0.96
HDAC4P56524 AC099778.1-201ENST00000568593 1911 ntBASIC21.02■□□□□ 0.96
HDAC4P56524 EGLN2-202ENST00000406058 2150 ntAPPRIS P1 TSL 1 (best) BASIC21.02■□□□□ 0.96
HDAC4P56524 RPUSD1-202ENST00000561734 2159 ntAPPRIS P1 TSL 1 (best) BASIC21.02■□□□□ 0.96
HDAC4P56524 TPBGL-201ENST00000562197 2793 ntAPPRIS P1 BASIC21.02■□□□□ 0.96
HDAC4P56524 GCC2-AS1-201ENST00000322353 558 ntTSL 2 BASIC21.02■□□□□ 0.96
HDAC4P56524 AC092171.1-201ENST00000455866 753 ntTSL 2 BASIC21.02■□□□□ 0.96
HDAC4P56524 ZNF324-202ENST00000535298 1006 ntTSL 5 BASIC21.02■□□□□ 0.96
HDAC4P56524 ULK4P1-204ENST00000565949 721 ntTSL 4 BASIC21.02■□□□□ 0.96
HDAC4P56524 PLK5-204ENST00000588430 900 ntAPPRIS ALT2 TSL 5 BASIC21.02■□□□□ 0.96
HDAC4P56524 AC027307.1-201ENST00000590252 457 ntTSL 5 BASIC21.02■□□□□ 0.96
HDAC4P56524 ATP6V0E2-211ENST00000606024 893 ntTSL 1 (best) BASIC21.02■□□□□ 0.96
HDAC4P56524 PTCD3-220ENST00000627371 210 ntTSL 5 BASIC21.02■□□□□ 0.96
HDAC4P56524 GAMT-205ENST00000640762 751 ntTSL 5 BASIC21.02■□□□□ 0.96
HDAC4P56524 FBXW8-201ENST00000309909 2343 ntAPPRIS P1 TSL 1 (best) BASIC21.02■□□□□ 0.96
HDAC4P56524 MEF2A-202ENST00000354410 5824 ntAPPRIS P3 TSL 1 (best) BASIC21.02■□□□□ 0.96
HDAC4P56524 BLCAP-208ENST00000414542 2205 ntAPPRIS P1 TSL 3 BASIC21.02■□□□□ 0.96
HDAC4P56524 CRHR1-203ENST00000339069 2490 ntTSL 2 BASIC21.02■□□□□ 0.96
HDAC4P56524 RNH1-202ENST00000356187 1791 ntAPPRIS P1 TSL 1 (best) BASIC21.02■□□□□ 0.96
HDAC4P56524 CAV2-201ENST00000222693 3301 ntAPPRIS P1 TSL 1 (best) BASIC21.02■□□□□ 0.96
HDAC4P56524 USP39-204ENST00000409766 2033 ntTSL 2 BASIC21.02■□□□□ 0.96
HDAC4P56524 RAB5A-201ENST00000273047 2536 ntAPPRIS P1 TSL 1 (best) BASIC21.02■□□□□ 0.95
HDAC4P56524 STARD3-202ENST00000394250 1949 ntTSL 2 BASIC21.02■□□□□ 0.95
HDAC4P56524 TSPAN3-207ENST00000559494 1326 ntTSL 5 BASIC21.02■□□□□ 0.95
HDAC4P56524 ZNF664-207ENST00000539644 5108 ntAPPRIS P1 TSL 1 (best) BASIC21.01■□□□□ 0.95
HDAC4P56524 PCDHB12-202ENST00000622978 2093 ntTSL 2 BASIC21.01■□□□□ 0.95
HDAC4P56524 ZDHHC14-203ENST00000359775 7380 ntAPPRIS P1 TSL 1 (best) BASIC21.01■□□□□ 0.95
HDAC4P56524 MAPK15-201ENST00000338033 1961 ntAPPRIS P1 TSL 1 (best) BASIC21.01■□□□□ 0.95
HDAC4P56524 SNRPA-201ENST00000243563 1621 ntAPPRIS P1 TSL 1 (best) BASIC21.01■□□□□ 0.95
HDAC4P56524 SCRN2-201ENST00000290216 1548 ntAPPRIS P1 TSL 1 (best) BASIC21.01■□□□□ 0.95
HDAC4P56524 BHLHA15-201ENST00000314018 706 ntAPPRIS P1 BASIC21.01■□□□□ 0.95
HDAC4P56524 FNDC11-201ENST00000370097 1119 ntAPPRIS P1 TSL 2 BASIC21.01■□□□□ 0.95
HDAC4P56524 WIPF1-207ENST00000410117 777 ntTSL 3 BASIC21.01■□□□□ 0.95
HDAC4P56524 ELAVL3-202ENST00000438662 1223 ntAPPRIS ALT1 TSL 5 BASIC21.01■□□□□ 0.95
HDAC4P56524 C2orf69P4-201ENST00000565394 541 ntBASIC21.01■□□□□ 0.95
HDAC4P56524 ANAPC11-219ENST00000583839 499 ntAPPRIS P1 TSL 2 BASIC21.01■□□□□ 0.95
HDAC4P56524 BHLHA15-202ENST00000609256 796 ntAPPRIS P1 TSL 3 BASIC21.01■□□□□ 0.95
HDAC4P56524 IGFBP3-211ENST00000615754 792 ntTSL 5 BASIC21.01■□□□□ 0.95
HDAC4P56524 TAF15-215ENST00000605844 2191 ntAPPRIS P3 TSL 1 (best) BASIC21.01■□□□□ 0.95
HDAC4P56524 SAE1-203ENST00000413379 2313 ntTSL 2 BASIC21.01■□□□□ 0.95
HDAC4P56524 RBM34-201ENST00000408888 2054 ntAPPRIS P1 TSL 1 (best) BASIC21.01■□□□□ 0.95
HDAC4P56524 SCYL2-201ENST00000360820 5779 ntAPPRIS P1 TSL 1 (best) BASIC21.01■□□□□ 0.95
HDAC4P56524 FGFR1-214ENST00000447712 5900 ntAPPRIS P3 TSL 1 (best) BASIC21.01■□□□□ 0.95
HDAC4P56524 PRMT8-202ENST00000382622 2366 ntAPPRIS P1 TSL 1 (best) BASIC21.01■□□□□ 0.95
HDAC4P56524 SSBP3-216ENST00000610401 3168 ntTSL 5 BASIC21.01■□□□□ 0.95
HDAC4P56524 CLDN5-204ENST00000618236 1374 ntAPPRIS P1 BASIC21■□□□□ 0.95
HDAC4P56524 RTBDN-207ENST00000589272 2076 ntTSL 2 BASIC21■□□□□ 0.95
HDAC4P56524 FAM76A-205ENST00000419687 1661 ntTSL 2 BASIC21■□□□□ 0.95
HDAC4P56524 FAM72B-202ENST00000369390 2396 ntAPPRIS P1 TSL 1 (best) BASIC21■□□□□ 0.95
HDAC4P56524 GAR1-201ENST00000226796 1224 ntAPPRIS P1 TSL 1 (best) BASIC21■□□□□ 0.95
HDAC4P56524 PPP1CA-202ENST00000358239 1054 ntTSL 2 BASIC21■□□□□ 0.95
HDAC4P56524 HSD17B10-202ENST00000375298 823 ntTSL 3 BASIC21■□□□□ 0.95
HDAC4P56524 SLC29A4P1-201ENST00000398760 971 ntBASIC21■□□□□ 0.95
HDAC4P56524 SNAP23-210ENST00000564153 775 ntTSL 2 BASIC21■□□□□ 0.95
HDAC4P56524 GNAO1-211ENST00000570235 568 ntTSL 2 BASIC21■□□□□ 0.95
HDAC4P56524 RPL17-204ENST00000579248 790 ntAPPRIS P1 TSL 2 BASIC21■□□□□ 0.95
HDAC4P56524 PLEKHJ1-205ENST00000587394 937 ntTSL 2 BASIC21■□□□□ 0.95
HDAC4P56524 NDUFA6-AS1-207ENST00000595777 833 ntTSL 5 BASIC21■□□□□ 0.95
HDAC4P56524 SETD6-201ENST00000219315 1553 ntAPPRIS ALT2 TSL 1 (best) BASIC21■□□□□ 0.95
HDAC4P56524 HDHD5-201ENST00000155674 1735 ntAPPRIS P3 TSL 1 (best) BASIC21■□□□□ 0.95
HDAC4P56524 MLST8-202ENST00000382450 1861 ntAPPRIS ALT1 TSL 2 BASIC21■□□□□ 0.95
HDAC4P56524 MLST8-215ENST00000564088 1861 ntAPPRIS P3 TSL 2 BASIC21■□□□□ 0.95
HDAC4P56524 CPT2-203ENST00000635862 2319 ntTSL 5 BASIC21■□□□□ 0.95
HDAC4P56524 RAVER2-201ENST00000294428 4398 ntAPPRIS ALT2 TSL 5 BASIC21■□□□□ 0.95
HDAC4P56524 GPR162-201ENST00000311268 2768 ntAPPRIS P1 TSL 1 (best) BASIC21■□□□□ 0.95
HDAC4P56524 GRINA-201ENST00000313269 1968 ntAPPRIS P1 TSL 5 BASIC20.99■□□□□ 0.95
HDAC4P56524 DIAPH1-203ENST00000389057 5762 ntAPPRIS ALT2 TSL 5 BASIC20.99■□□□□ 0.95
HDAC4P56524 WASH6P-203ENST00000460206 1826 ntTSL 5 BASIC20.99■□□□□ 0.95
HDAC4P56524 DTD1-201ENST00000377452 1387 ntAPPRIS P1 TSL 1 (best) BASIC20.99■□□□□ 0.95
HDAC4P56524 FAM66B-202ENST00000606573 2630 ntTSL 1 (best) BASIC20.99■□□□□ 0.95
HDAC4P56524 FAM213A-202ENST00000372185 1723 ntTSL 2 BASIC20.99■□□□□ 0.95
HDAC4P56524 AC104771.1-201ENST00000603335 964 ntBASIC20.99■□□□□ 0.95
HDAC4P56524 ATRAID-208ENST00000611786 1256 ntTSL 1 (best) BASIC20.99■□□□□ 0.95
HDAC4P56524 AC092118.2-201ENST00000613495 667 ntBASIC20.99■□□□□ 0.95
HDAC4P56524 AL109923.1-201ENST00000618799 583 ntBASIC20.99■□□□□ 0.95
HDAC4P56524 EFHD2-201ENST00000375980 2419 ntAPPRIS P1 TSL 1 (best) BASIC20.99■□□□□ 0.95
HDAC4P56524 NXN-202ENST00000537628 1340 ntTSL 3 BASIC20.99■□□□□ 0.95
HDAC4P56524 INTS11-202ENST00000411962 1832 ntTSL 5 BASIC20.99■□□□□ 0.95
HDAC4P56524 ATP11C-203ENST00000370557 6924 ntAPPRIS ALT2 TSL 5 BASIC20.99■□□□□ 0.95
HDAC4P56524 KLHDC2-201ENST00000298307 5514 ntAPPRIS P1 TSL 1 (best) BASIC20.98■□□□□ 0.95
HDAC4P56524 AC112907.3-201ENST00000577781 2400 ntBASIC20.98■□□□□ 0.95
HDAC4P56524 CYP27A1-201ENST00000258415 2286 ntAPPRIS P1 TSL 1 (best) BASIC20.98■□□□□ 0.95
HDAC4P56524 WDR25-201ENST00000335290 2123 ntAPPRIS P1 TSL 1 (best) BASIC20.98■□□□□ 0.95
HDAC4P56524 RFXANK-201ENST00000303088 1407 ntAPPRIS P1 TSL 1 (best) BASIC20.98■□□□□ 0.95
HDAC4P56524 KCTD13-207ENST00000568000 2528 ntAPPRIS P1 TSL 1 (best) BASIC20.98■□□□□ 0.95
HDAC4P56524 ZBTB7A-201ENST00000322357 5422 ntAPPRIS P1 TSL 1 (best) BASIC20.98■□□□□ 0.95
HDAC4P56524 PQLC2-201ENST00000375153 2153 ntAPPRIS P1 TSL 2 BASIC20.98■□□□□ 0.95
HDAC4P56524 CHST1-201ENST00000308064 2718 ntAPPRIS P1 TSL 1 (best) BASIC20.98■□□□□ 0.95
HDAC4P56524 LINC00471-201ENST00000313064 1282 ntTSL 1 (best) BASIC20.98■□□□□ 0.95
HDAC4P56524 XXYLT1-202ENST00000356740 564 ntTSL 2 BASIC20.98■□□□□ 0.95
HDAC4P56524 COA6-202ENST00000366613 641 ntTSL 1 (best) BASIC20.98■□□□□ 0.95
HDAC4P56524 OR2A1-AS1-201ENST00000462305 773 ntBASIC20.98■□□□□ 0.95
HDAC4P56524 AC004889.1-204ENST00000474656 773 ntTSL 3 BASIC20.98■□□□□ 0.95
HDAC4P56524 LINC01956-201ENST00000557729 695 ntTSL 5 BASIC20.98■□□□□ 0.95
HDAC4P56524 NAE1-201ENST00000290810 1837 ntAPPRIS P1 TSL 1 (best) BASIC20.98■□□□□ 0.95
Retrieved 100 of 98,524 protein–RNA pairs in 48.8 ms