Protein–RNA interactions for Protein: P55344

LIM2, Lens fiber membrane intrinsic protein, humanhuman

Predictions only

Length 173 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LIM2P55344 PHLDA3-202ENST00000367311 2640 ntAPPRIS P1 TSL 1 (best) BASIC19.12■□□□□ 0.65
LIM2P55344 FOXI1-202ENST00000449804 2011 ntTSL 1 (best) BASIC19.12■□□□□ 0.65
LIM2P55344 TTLL7-214ENST00000610996 2028 ntTSL 5 BASIC19.12■□□□□ 0.65
LIM2P55344 CDV3-201ENST00000264993 3307 ntAPPRIS P1 TSL 1 (best) BASIC19.12■□□□□ 0.65
LIM2P55344 ARSE-205ENST00000540563 1990 ntTSL 2 BASIC19.12■□□□□ 0.65
LIM2P55344 NRXN2-203ENST00000377551 6373 ntAPPRIS P3 TSL 1 (best) BASIC19.11■□□□□ 0.65
LIM2P55344 TACC3-213ENST00000617535 1693 ntTSL 5 BASIC19.11■□□□□ 0.65
LIM2P55344 MFSD10-206ENST00000508221 1639 ntTSL 5 BASIC19.11■□□□□ 0.65
LIM2P55344 CRHR1-203ENST00000339069 2490 ntTSL 2 BASIC19.11■□□□□ 0.65
LIM2P55344 DET1-207ENST00000564406 2315 ntTSL 2 BASIC19.11■□□□□ 0.65
LIM2P55344 TRPV6-209ENST00000638686 2298 ntAPPRIS P2 TSL 1 (best) BASIC19.11■□□□□ 0.65
LIM2P55344 RIPPLY3-201ENST00000329553 2235 ntAPPRIS P1 TSL 1 (best) BASIC19.11■□□□□ 0.65
LIM2P55344 ME3-202ENST00000393324 2240 ntAPPRIS P1 TSL 1 (best) BASIC19.11■□□□□ 0.65
LIM2P55344 NUDT22-201ENST00000279206 1094 ntAPPRIS P3 TSL 1 (best) BASIC19.11■□□□□ 0.65
LIM2P55344 CBY3-201ENST00000376974 785 ntAPPRIS P1 TSL 2 BASIC19.11■□□□□ 0.65
LIM2P55344 NUDT22-204ENST00000441250 986 ntAPPRIS ALT2 TSL 5 BASIC19.11■□□□□ 0.65
LIM2P55344 ANKRD65-202ENST00000442470 876 ntTSL 2 BASIC19.11■□□□□ 0.65
LIM2P55344 AC091874.3-201ENST00000512672 1195 ntBASIC19.11■□□□□ 0.65
LIM2P55344 LINC01956-201ENST00000557729 695 ntTSL 5 BASIC19.11■□□□□ 0.65
LIM2P55344 AC098934.4-201ENST00000564127 592 ntBASIC19.11■□□□□ 0.65
LIM2P55344 MTURN-201ENST00000324453 5937 ntAPPRIS P1 TSL 1 (best) BASIC19.11■□□□□ 0.65
LIM2P55344 ESR2-212ENST00000556275 2695 ntTSL 2 BASIC19.11■□□□□ 0.65
LIM2P55344 UAP1-201ENST00000271469 2377 ntAPPRIS ALT1 TSL 5 BASIC19.11■□□□□ 0.65
LIM2P55344 MUS81-201ENST00000308110 2392 ntAPPRIS P1 TSL 1 (best) BASIC19.11■□□□□ 0.65
LIM2P55344 PCDHAC2-203ENST00000615316 3011 ntBASIC19.11■□□□□ 0.65
LIM2P55344 ARMC9-201ENST00000349938 2300 ntAPPRIS P1 TSL 1 (best) BASIC19.11■□□□□ 0.65
LIM2P55344 CBWD3-201ENST00000360171 2165 ntAPPRIS P2 TSL 1 (best) BASIC19.1■□□□□ 0.65
LIM2P55344 FN3K-201ENST00000300784 1434 ntAPPRIS P1 TSL 1 (best) BASIC19.1■□□□□ 0.65
LIM2P55344 NT5C-201ENST00000245552 954 ntAPPRIS P1 TSL 1 (best) BASIC19.1■□□□□ 0.65
LIM2P55344 JDP2-202ENST00000419727 972 ntAPPRIS P1 TSL 2 BASIC19.1■□□□□ 0.65
LIM2P55344 GNAS-AS1-201ENST00000424094 1156 ntTSL 1 (best) BASIC19.1■□□□□ 0.65
LIM2P55344 AL391244.2-201ENST00000428932 543 ntTSL 2 BASIC19.1■□□□□ 0.65
LIM2P55344 AC073210.2-201ENST00000430369 194 ntBASIC19.1■□□□□ 0.65
LIM2P55344 LINC01962-201ENST00000513771 411 ntTSL 2 BASIC19.1■□□□□ 0.65
LIM2P55344 TP53I11-215ENST00000531928 1078 ntTSL 3 BASIC19.1■□□□□ 0.65
LIM2P55344 AC138028.5-201ENST00000566114 558 ntTSL 5 BASIC19.1■□□□□ 0.65
LIM2P55344 BRWD1-AS2-201ENST00000603064 1028 ntBASIC19.1■□□□□ 0.65
LIM2P55344 MAP2K5-203ENST00000354498 1783 ntTSL 2 BASIC19.1■□□□□ 0.65
LIM2P55344 SDK1-201ENST00000389531 7606 ntAPPRIS ALT2 TSL 5 BASIC19.1■□□□□ 0.65
LIM2P55344 OGG1-202ENST00000302008 2191 ntAPPRIS ALT2 TSL 5 BASIC19.1■□□□□ 0.65
LIM2P55344 ACHE-207ENST00000428317 2159 ntAPPRIS P1 TSL 1 (best) BASIC19.1■□□□□ 0.65
LIM2P55344 AR-204ENST00000504326 3615 ntTSL 1 (best) BASIC19.1■□□□□ 0.65
LIM2P55344 DPP3P2-201ENST00000416030 1696 ntBASIC19.1■□□□□ 0.65
LIM2P55344 ATF5-202ENST00000595125 1637 ntAPPRIS P1 TSL 2 BASIC19.1■□□□□ 0.65
LIM2P55344 AC016065.1-201ENST00000500118 2413 ntTSL 2 BASIC19.1■□□□□ 0.65
LIM2P55344 CCDC91-207ENST00000539107 2440 ntTSL 5 BASIC19.1■□□□□ 0.65
LIM2P55344 EBF1-202ENST00000380654 2345 ntTSL 1 (best) BASIC19.09■□□□□ 0.65
LIM2P55344 FUZ-212ENST00000528094 1479 ntTSL 2 BASIC19.09■□□□□ 0.65
LIM2P55344 AL445183.2-201ENST00000439621 1871 ntTSL 2 BASIC19.09■□□□□ 0.65
LIM2P55344 TMPRSS5-212ENST00000545579 2163 ntAPPRIS ALT2 TSL 1 (best) BASIC19.09■□□□□ 0.65
LIM2P55344 AVPR2-202ENST00000358927 1763 ntAPPRIS P1 TSL 5 BASIC19.09■□□□□ 0.65
LIM2P55344 PBX1-222ENST00000627490 1769 ntTSL 2 BASIC19.09■□□□□ 0.65
LIM2P55344 EEF1D-246ENST00000532741 2387 ntTSL 1 (best) BASIC19.09■□□□□ 0.65
LIM2P55344 TMEM243-201ENST00000257637 1063 ntAPPRIS P1 TSL 1 (best) BASIC19.09■□□□□ 0.65
LIM2P55344 MPV17L-202ENST00000396385 1037 ntAPPRIS P1 TSL 1 (best) BASIC19.09■□□□□ 0.65
LIM2P55344 AC069152.1-201ENST00000438030 544 ntBASIC19.09■□□□□ 0.65
LIM2P55344 CTBP1-AS2-203ENST00000507044 739 ntTSL 3 BASIC19.09■□□□□ 0.65
LIM2P55344 RRAS2-203ENST00000526063 970 ntTSL 1 (best) BASIC19.09■□□□□ 0.65
LIM2P55344 BET1L-207ENST00000529614 560 ntTSL 5 BASIC19.09■□□□□ 0.65
LIM2P55344 RRAS2-208ENST00000532814 982 ntTSL 1 (best) BASIC19.09■□□□□ 0.65
LIM2P55344 AC133041.1-202ENST00000642053 222 ntBASIC19.09■□□□□ 0.65
LIM2P55344 NDRG2-242ENST00000555158 2216 ntAPPRIS ALT1 TSL 1 (best) BASIC19.09■□□□□ 0.65
LIM2P55344 AC005224.2-201ENST00000571192 1885 ntTSL 2 BASIC19.09■□□□□ 0.65
LIM2P55344 XBP1-203ENST00000403532 1824 ntAPPRIS ALT1 TSL 3 BASIC19.09■□□□□ 0.65
LIM2P55344 NTNG2-202ENST00000393229 4792 ntAPPRIS P1 TSL 1 (best) BASIC19.09■□□□□ 0.65
LIM2P55344 RNH1-202ENST00000356187 1791 ntAPPRIS P1 TSL 1 (best) BASIC19.09■□□□□ 0.65
LIM2P55344 CPT2-203ENST00000635862 2319 ntTSL 5 BASIC19.08■□□□□ 0.65
LIM2P55344 NEU4-202ENST00000391969 2526 ntAPPRIS P1 TSL 2 BASIC19.08■□□□□ 0.65
LIM2P55344 SETD6-201ENST00000219315 1553 ntAPPRIS ALT2 TSL 1 (best) BASIC19.08■□□□□ 0.65
LIM2P55344 TMEM218-201ENST00000279968 1034 ntAPPRIS P1 TSL 1 (best) BASIC19.08■□□□□ 0.64
LIM2P55344 NME6-213ENST00000451657 871 ntTSL 2 BASIC19.08■□□□□ 0.64
LIM2P55344 RHEB-204ENST00000472642 900 ntTSL 3 BASIC19.08■□□□□ 0.64
LIM2P55344 DIMT1-202ENST00000506390 1208 ntTSL 1 (best) BASIC19.08■□□□□ 0.64
LIM2P55344 RPL17-204ENST00000579248 790 ntAPPRIS P1 TSL 2 BASIC19.08■□□□□ 0.64
LIM2P55344 MYC-209ENST00000641252 345 ntBASIC19.08■□□□□ 0.64
LIM2P55344 ACBD4-201ENST00000321854 1806 ntAPPRIS P1 TSL 1 (best) BASIC19.08■□□□□ 0.64
LIM2P55344 BRD4-202ENST00000360016 3240 ntAPPRIS ALT2 TSL 1 (best) BASIC19.08■□□□□ 0.64
LIM2P55344 BCL7A-201ENST00000261822 2581 ntAPPRIS P1 TSL 1 (best) BASIC19.08■□□□□ 0.64
LIM2P55344 TBC1D12-201ENST00000225235 5272 ntAPPRIS P1 TSL 1 (best) BASIC19.08■□□□□ 0.64
LIM2P55344 UBE2F-201ENST00000272930 2009 ntAPPRIS P1 TSL 1 (best) BASIC19.08■□□□□ 0.64
LIM2P55344 PARD3-208ENST00000374789 6005 ntAPPRIS P3 TSL 1 (best) BASIC19.08■□□□□ 0.64
LIM2P55344 SPG7-202ENST00000341316 2288 ntTSL 1 (best) BASIC19.08■□□□□ 0.64
LIM2P55344 TNFRSF14-201ENST00000355716 1707 ntAPPRIS P2 TSL 1 (best) BASIC19.08■□□□□ 0.64
LIM2P55344 IKZF1-209ENST00000438033 1748 ntTSL 2 BASIC19.08■□□□□ 0.64
LIM2P55344 KLC1-208ENST00000452929 2453 ntTSL 5 BASIC19.08■□□□□ 0.64
LIM2P55344 C19orf66-201ENST00000253110 2117 ntAPPRIS P3 TSL 2 BASIC19.07■□□□□ 0.64
LIM2P55344 PGAM5-203ENST00000498926 2834 ntAPPRIS P1 TSL 2 BASIC19.07■□□□□ 0.64
LIM2P55344 MEGF6-202ENST00000356575 5455 ntAPPRIS P1 TSL 1 (best) BASIC19.07■□□□□ 0.64
LIM2P55344 RHBDD3-201ENST00000216085 1794 ntAPPRIS P1 TSL 1 (best) BASIC19.07■□□□□ 0.64
LIM2P55344 VPS53-201ENST00000291074 2656 ntTSL 1 (best) BASIC19.07■□□□□ 0.64
LIM2P55344 UBE2C-203ENST00000352551 665 ntTSL 2 BASIC19.07■□□□□ 0.64
LIM2P55344 CUEDC2-201ENST00000369937 1191 ntAPPRIS P1 TSL 1 (best) BASIC19.07■□□□□ 0.64
LIM2P55344 NOXO1-203ENST00000397280 1147 ntAPPRIS ALT2 TSL 1 (best) BASIC19.07■□□□□ 0.64
LIM2P55344 LINC01637-201ENST00000444039 684 ntTSL 2 BASIC19.07■□□□□ 0.64
LIM2P55344 AC097658.1-201ENST00000475555 843 ntBASIC19.07■□□□□ 0.64
LIM2P55344 AC099522.1-201ENST00000505955 881 ntTSL 3 BASIC19.07■□□□□ 0.64
LIM2P55344 EMC9-206ENST00000560403 872 ntTSL 2 BASIC19.07■□□□□ 0.64
LIM2P55344 PTMS-207ENST00000619580 1150 ntAPPRIS P1 TSL 1 (best) BASIC19.07■□□□□ 0.64
LIM2P55344 SPATA22-210ENST00000573128 1704 ntAPPRIS P1 TSL 1 (best) BASIC19.07■□□□□ 0.64
LIM2P55344 SMG8-203ENST00000578922 2178 ntBASIC19.07■□□□□ 0.64
Retrieved 100 of 98,524 protein–RNA pairs in 27.4 ms