Protein–RNA interactions for Protein: P28702

RXRB, Retinoic acid receptor RXR-beta, humanhuman

Predictions only

Length 533 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
RXRBP28702 PLSCR3-201ENST00000324822 1689 ntAPPRIS P1 TSL 1 (best) BASIC26.7■■□□□ 1.87
RXRBP28702 IFNLR1-202ENST00000327575 1476 ntAPPRIS ALT2 TSL 1 (best) BASIC26.7■■□□□ 1.87
RXRBP28702 HSD17B10-201ENST00000168216 960 ntAPPRIS P1 TSL 1 (best) BASIC26.7■■□□□ 1.86
RXRBP28702 S100A14-201ENST00000344616 1058 ntAPPRIS P1 TSL 1 (best) BASIC26.7■■□□□ 1.86
RXRBP28702 IMP3-202ENST00000403490 1237 ntAPPRIS P1 BASIC26.7■■□□□ 1.86
RXRBP28702 CKBP1-201ENST00000565489 1086 ntBASIC26.7■■□□□ 1.86
RXRBP28702 C6orf136-203ENST00000376473 1402 ntAPPRIS P1 TSL 1 (best) BASIC26.7■■□□□ 1.86
RXRBP28702 PDLIM2-202ENST00000308354 2236 ntTSL 1 (best) BASIC26.7■■□□□ 1.86
RXRBP28702 PDLIM2-203ENST00000339162 2226 ntTSL 1 (best) BASIC26.7■■□□□ 1.86
RXRBP28702 ZIC2-201ENST00000376335 2983 ntAPPRIS P1 TSL 1 (best) BASIC26.7■■□□□ 1.86
RXRBP28702 HABP4-202ENST00000375251 2304 ntTSL 1 (best) BASIC26.7■■□□□ 1.86
RXRBP28702 CD247-202ENST00000392122 1678 ntAPPRIS ALT1 TSL 1 (best) BASIC26.7■■□□□ 1.86
RXRBP28702 SRPK3-202ENST00000370101 1958 ntAPPRIS P3 TSL 1 (best) BASIC26.69■■□□□ 1.86
RXRBP28702 CYB561-205ENST00000542042 1302 ntTSL 2 BASIC26.69■■□□□ 1.86
RXRBP28702 EZH2-206ENST00000478654 2522 ntTSL 5 BASIC26.69■■□□□ 1.86
RXRBP28702 TMEM160-201ENST00000253047 663 ntAPPRIS P1 TSL 1 (best) BASIC26.69■■□□□ 1.86
RXRBP28702 SLC50A1-201ENST00000303343 1137 ntTSL 1 (best) BASIC26.69■■□□□ 1.86
RXRBP28702 CD1E-210ENST00000368165 1003 ntAPPRIS ALT2 TSL 1 (best) BASIC26.69■■□□□ 1.86
RXRBP28702 CAMK2N1-201ENST00000375078 2336 ntAPPRIS P1 TSL 1 (best) BASIC26.69■■□□□ 1.86
RXRBP28702 UQCRQ-201ENST00000378665 586 ntAPPRIS P1 TSL 1 (best) BASIC26.69■■□□□ 1.86
RXRBP28702 FXN-203ENST00000396366 922 ntTSL 2 BASIC26.69■■□□□ 1.86
RXRBP28702 CD1E-214ENST00000452291 745 ntTSL 1 (best) BASIC26.69■■□□□ 1.86
RXRBP28702 PRELID1P1-202ENST00000567272 903 ntBASIC26.69■■□□□ 1.86
RXRBP28702 CHMP4A-211ENST00000609024 735 ntAPPRIS P1 TSL 1 (best) BASIC26.69■■□□□ 1.86
RXRBP28702 CALHM3-201ENST00000369783 1652 ntAPPRIS P1 TSL 1 (best) BASIC26.69■■□□□ 1.86
RXRBP28702 MLF2-202ENST00000435120 1379 ntAPPRIS P1 TSL 2 BASIC26.69■■□□□ 1.86
RXRBP28702 PPHLN1-213ENST00000549190 1777 ntTSL 5 BASIC26.69■■□□□ 1.86
RXRBP28702 SH3GL1-206ENST00000598564 2194 ntTSL 2 BASIC26.68■■□□□ 1.86
RXRBP28702 B3GALNT2-202ENST00000366600 2015 ntAPPRIS P1 TSL 1 (best) BASIC26.68■■□□□ 1.86
RXRBP28702 RASD1-201ENST00000225688 1746 ntAPPRIS P1 TSL 1 (best) BASIC26.68■■□□□ 1.86
RXRBP28702 AC087742.1-201ENST00000575880 1738 ntBASIC26.68■■□□□ 1.86
RXRBP28702 CRADD-202ENST00000542893 1403 ntAPPRIS P1 TSL 1 (best) BASIC26.68■■□□□ 1.86
RXRBP28702 TMA7-201ENST00000438607 561 ntAPPRIS P1 TSL 1 (best) BASIC26.68■■□□□ 1.86
RXRBP28702 MIR1302-2HG-202ENST00000473358 712 ntTSL 5 BASIC26.68■■□□□ 1.86
RXRBP28702 AC140725.1-202ENST00000561145 712 ntTSL 5 BASIC26.68■■□□□ 1.86
RXRBP28702 AL445675.2-201ENST00000620291 557 ntBASIC26.68■■□□□ 1.86
RXRBP28702 SLC25A51-202ENST00000377716 1691 ntAPPRIS P1 TSL 3 BASIC26.68■■□□□ 1.86
RXRBP28702 FSCN2-202ENST00000417245 1665 ntAPPRIS P1 TSL 1 (best) BASIC26.68■■□□□ 1.86
RXRBP28702 SUN1-220ENST00000457378 1309 ntTSL 1 (best) BASIC26.67■■□□□ 1.86
RXRBP28702 IGF2-AS-201ENST00000381361 2063 ntTSL 2 BASIC26.67■■□□□ 1.86
RXRBP28702 SNF8-202ENST00000502492 2319 ntAPPRIS P3 TSL 1 (best) BASIC26.67■■□□□ 1.86
RXRBP28702 NTMT1-210ENST00000613644 1501 ntAPPRIS P1 TSL 3 BASIC26.67■■□□□ 1.86
RXRBP28702 MALL-203ENST00000427178 1070 ntTSL 1 (best) BASIC26.67■■□□□ 1.86
RXRBP28702 MRPL28-203ENST00000429738 310 ntTSL 2 BASIC26.67■■□□□ 1.86
RXRBP28702 TRIM73-203ENST00000437796 1169 ntAPPRIS P2 TSL 1 (best) BASIC26.67■■□□□ 1.86
RXRBP28702 CCR12P-201ENST00000446203 998 ntBASIC26.67■■□□□ 1.86
RXRBP28702 CMPK1-205ENST00000471289 816 ntTSL 2 BASIC26.67■■□□□ 1.86
RXRBP28702 NDUFV2-207ENST00000497577 868 ntTSL 2 BASIC26.67■■□□□ 1.86
RXRBP28702 AC099805.1-202ENST00000519927 1057 ntTSL 5 BASIC26.67■■□□□ 1.86
RXRBP28702 AP000721.2-201ENST00000537170 650 ntTSL 4 BASIC26.67■■□□□ 1.86
RXRBP28702 AC021066.1-201ENST00000549788 647 ntTSL 3 BASIC26.67■■□□□ 1.86
RXRBP28702 MIR3652-201ENST00000579335 131 ntBASIC26.67■■□□□ 1.86
RXRBP28702 ZSCAN1-203ENST00000601162 813 ntTSL 1 (best) BASIC26.67■■□□□ 1.86
RXRBP28702 ISG15-203ENST00000624697 788 ntAPPRIS ALT2 TSL 3 BASIC26.67■■□□□ 1.86
RXRBP28702 EMD-202ENST00000369842 1379 ntAPPRIS P1 TSL 1 (best) BASIC26.67■■□□□ 1.86
RXRBP28702 ABHD8-201ENST00000247706 2090 ntAPPRIS P1 TSL 1 (best) BASIC26.67■■□□□ 1.86
RXRBP28702 ZNF771-202ENST00000434417 1454 ntAPPRIS P1 TSL 2 BASIC26.67■■□□□ 1.86
RXRBP28702 KLC3-202ENST00000470402 1820 ntTSL 1 (best) BASIC26.67■■□□□ 1.86
RXRBP28702 CLDND1-201ENST00000341181 2161 ntAPPRIS P1 TSL 1 (best) BASIC26.67■■□□□ 1.86
RXRBP28702 TSGA10IP-203ENST00000532620 1925 ntAPPRIS P1 TSL 1 (best) BASIC26.67■■□□□ 1.86
RXRBP28702 CDK5-204ENST00000485972 1758 ntAPPRIS P1 TSL 1 (best) BASIC26.66■■□□□ 1.86
RXRBP28702 PSMD6-201ENST00000295901 1430 ntAPPRIS P1 TSL 1 (best) BASIC26.66■■□□□ 1.86
RXRBP28702 AC068473.5-201ENST00000616428 2072 ntBASIC26.66■■□□□ 1.86
RXRBP28702 AVPR2-201ENST00000337474 1622 ntAPPRIS P1 TSL 1 (best) BASIC26.66■■□□□ 1.86
RXRBP28702 ROMO1-202ENST00000374072 350 ntTSL 5 BASIC26.66■■□□□ 1.86
RXRBP28702 SKP2-204ENST00000508514 821 ntTSL 3 BASIC26.66■■□□□ 1.86
RXRBP28702 PRSS44-201ENST00000515154 1146 ntBASIC26.66■■□□□ 1.86
RXRBP28702 RPH3AL-203ENST00000536489 1235 ntTSL 2 BASIC26.66■■□□□ 1.86
RXRBP28702 FXYD7-203ENST00000586063 456 ntAPPRIS ALT2 TSL 3 BASIC26.66■■□□□ 1.86
RXRBP28702 AC016582.2-201ENST00000591908 446 ntTSL 3 BASIC26.66■■□□□ 1.86
RXRBP28702 SYNGR4-202ENST00000595322 533 ntTSL 3 BASIC26.66■■□□□ 1.86
RXRBP28702 AC008763.3-201ENST00000597959 777 ntAPPRIS P1 TSL 4 BASIC26.66■■□□□ 1.86
RXRBP28702 GFOD2-207ENST00000602855 819 ntTSL 3 BASIC26.66■■□□□ 1.86
RXRBP28702 BCL10-202ENST00000620248 774 ntTSL 5 BASIC26.66■■□□□ 1.86
RXRBP28702 CEMP1-202ENST00000567119 1374 ntAPPRIS P2 BASIC26.66■■□□□ 1.86
RXRBP28702 CITED2-202ENST00000536159 1797 ntAPPRIS P1 TSL 3 BASIC26.66■■□□□ 1.86
RXRBP28702 CITED2-203ENST00000537332 1780 ntTSL 3 BASIC26.66■■□□□ 1.86
RXRBP28702 AATK-AS1-203ENST00000637878 1306 ntAPPRIS P1 TSL 5 BASIC26.65■■□□□ 1.86
RXRBP28702 PRR35-201ENST00000409413 2216 ntAPPRIS P1 TSL 1 (best) BASIC26.65■■□□□ 1.86
RXRBP28702 DNTTIP1-201ENST00000372622 1290 ntAPPRIS P1 TSL 1 (best) BASIC26.65■■□□□ 1.86
RXRBP28702 CYGB-204ENST00000589342 815 ntTSL 3 BASIC26.65■■□□□ 1.86
RXRBP28702 GXYLT1P4-201ENST00000613576 1192 ntBASIC26.65■■□□□ 1.86
RXRBP28702 AC010653.2-201ENST00000623505 997 ntBASIC26.65■■□□□ 1.86
RXRBP28702 AL732314.6-201ENST00000627721 484 ntTSL 4 BASIC26.65■■□□□ 1.86
RXRBP28702 PGPEP1L-202ENST00000535714 1483 ntTSL 2 BASIC26.65■■□□□ 1.86
RXRBP28702 AC245041.2-204ENST00000610809 1962 ntTSL 1 (best) BASIC26.64■■□□□ 1.86
RXRBP28702 ADRA1A-203ENST00000380572 1697 ntTSL 1 (best) BASIC26.64■■□□□ 1.86
RXRBP28702 SERPINH1-212ENST00000530284 1358 ntTSL 1 (best) BASIC26.64■■□□□ 1.86
RXRBP28702 COQ10B-203ENST00000409398 879 ntTSL 3 BASIC26.64■■□□□ 1.86
RXRBP28702 REEP1-207ENST00000535845 1196 ntTSL 2 BASIC26.64■■□□□ 1.86
RXRBP28702 AC003688.1-201ENST00000577138 489 ntAPPRIS P1 TSL 3 BASIC26.64■■□□□ 1.86
RXRBP28702 AC140113.3-201ENST00000605663 199 ntBASIC26.64■■□□□ 1.86
RXRBP28702 REXO2-220ENST00000611665 1158 ntAPPRIS P1 TSL 1 (best) BASIC26.64■■□□□ 1.86
RXRBP28702 PITPNB-211ENST00000634017 1017 ntAPPRIS ALT1 TSL 2 BASIC26.64■■□□□ 1.86
RXRBP28702 UCHL5-205ENST00000367454 1815 ntAPPRIS ALT1 TSL 1 (best) BASIC26.64■■□□□ 1.85
RXRBP28702 MCEMP1-201ENST00000333598 1730 ntAPPRIS P2 TSL 1 (best) BASIC26.64■■□□□ 1.85
RXRBP28702 GPS1-204ENST00000392358 2276 ntTSL 1 (best) BASIC26.64■■□□□ 1.85
RXRBP28702 SMAD1-201ENST00000302085 1966 ntAPPRIS P1 TSL 1 (best) BASIC26.64■■□□□ 1.85
RXRBP28702 C12orf76-203ENST00000546651 1755 ntTSL 2 BASIC26.63■■□□□ 1.85
RXRBP28702 PDK3-201ENST00000379162 1809 ntAPPRIS P1 TSL 1 (best) BASIC26.63■■□□□ 1.85
Retrieved 100 of 98,524 protein–RNA pairs in 38.5 ms