Protein–RNA interactions for Protein: P09017

HOXC4, Homeobox protein Hox-C4, humanhuman

Predicted RBP Predictions only

Length 264 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HOXC4P09017 AL121906.2-201ENST00000621597 723 ntBASIC19.73■□□□□ 0.75
HOXC4P09017 CREB3-201ENST00000353704 1832 ntAPPRIS P1 TSL 1 (best) BASIC19.73■□□□□ 0.75
HOXC4P09017 WASH6P-203ENST00000460206 1826 ntTSL 5 BASIC19.73■□□□□ 0.75
HOXC4P09017 EML2-201ENST00000245925 2264 ntAPPRIS P3 TSL 1 (best) BASIC19.73■□□□□ 0.75
HOXC4P09017 KDELR3-201ENST00000216014 1728 ntAPPRIS P1 TSL 1 (best) BASIC19.73■□□□□ 0.75
HOXC4P09017 ENOSF1-201ENST00000251101 1867 ntAPPRIS P1 TSL 1 (best) BASIC19.73■□□□□ 0.75
HOXC4P09017 DNAH17-AS1-202ENST00000591373 1453 ntTSL 5 BASIC19.73■□□□□ 0.75
HOXC4P09017 MON1A-203ENST00000455683 1617 ntAPPRIS ALT2 TSL 1 (best) BASIC19.73■□□□□ 0.75
HOXC4P09017 MAP2K5-203ENST00000354498 1783 ntTSL 2 BASIC19.72■□□□□ 0.75
HOXC4P09017 FAM3A-208ENST00000419205 1763 ntTSL 2 BASIC19.72■□□□□ 0.75
HOXC4P09017 LRCH4-211ENST00000619071 2098 ntTSL 5 BASIC19.72■□□□□ 0.75
HOXC4P09017 KCNN4-201ENST00000262888 2240 ntAPPRIS P1 TSL 1 (best) BASIC19.72■□□□□ 0.75
HOXC4P09017 C16orf72-201ENST00000327827 5953 ntAPPRIS P1 TSL 1 (best) BASIC19.72■□□□□ 0.75
HOXC4P09017 LINC01505-207ENST00000637185 1540 ntTSL 5 BASIC19.72■□□□□ 0.75
HOXC4P09017 PPP3CC-201ENST00000240139 2189 ntAPPRIS P3 TSL 1 (best) BASIC19.72■□□□□ 0.75
HOXC4P09017 C6orf132-202ENST00000356542 894 ntAPPRIS ALT2 TSL 2 BASIC19.72■□□□□ 0.75
HOXC4P09017 GPRC5C-204ENST00000392629 1419 ntAPPRIS ALT2 TSL 1 (best) BASIC19.72■□□□□ 0.75
HOXC4P09017 DNPH1-202ENST00000393987 796 ntTSL 2 BASIC19.72■□□□□ 0.75
HOXC4P09017 AC068831.2-201ENST00000448987 367 ntTSL 2 BASIC19.72■□□□□ 0.75
HOXC4P09017 AC035140.1-201ENST00000507957 493 ntTSL 3 BASIC19.72■□□□□ 0.75
HOXC4P09017 AL049780.2-201ENST00000556236 367 ntTSL 3 BASIC19.72■□□□□ 0.75
HOXC4P09017 ARMC4P1-202ENST00000576034 643 ntTSL 2 BASIC19.72■□□□□ 0.75
HOXC4P09017 FBXL12-205ENST00000586651 1736 ntTSL 1 (best) BASIC19.72■□□□□ 0.75
HOXC4P09017 FXYD1-204ENST00000588081 645 ntAPPRIS P1 TSL 1 (best) BASIC19.72■□□□□ 0.75
HOXC4P09017 TOP2B-204ENST00000435706 5389 ntAPPRIS P3 TSL 1 (best) BASIC19.72■□□□□ 0.75
HOXC4P09017 DAPK3-202ENST00000545797 2257 ntAPPRIS P1 TSL 2 BASIC19.72■□□□□ 0.75
HOXC4P09017 VGF-202ENST00000445482 2477 ntAPPRIS P1 TSL 5 BASIC19.71■□□□□ 0.75
HOXC4P09017 POMGNT2-202ENST00000441964 2531 ntAPPRIS P1 TSL 4 BASIC19.71■□□□□ 0.75
HOXC4P09017 RIOX1-201ENST00000304061 2429 ntAPPRIS P1 BASIC19.71■□□□□ 0.75
HOXC4P09017 PRPSAP2-201ENST00000268835 1910 ntAPPRIS P1 TSL 1 (best) BASIC19.71■□□□□ 0.75
HOXC4P09017 AVP-201ENST00000380293 619 ntAPPRIS P1 TSL 1 (best) BASIC19.71■□□□□ 0.75
HOXC4P09017 KRASP1-201ENST00000407852 552 ntBASIC19.71■□□□□ 0.75
HOXC4P09017 RAB29-203ENST00000414729 1157 ntAPPRIS P1 TSL 1 (best) BASIC19.71■□□□□ 0.75
HOXC4P09017 LINC00894-209ENST00000458274 547 ntTSL 2 BASIC19.71■□□□□ 0.75
HOXC4P09017 AC007786.1-201ENST00000587859 709 ntTSL 2 BASIC19.71■□□□□ 0.75
HOXC4P09017 TMEM191C-214ENST00000621561 1337 ntAPPRIS P2 TSL 5 BASIC19.71■□□□□ 0.75
HOXC4P09017 MTMR9LP-202ENST00000423995 1878 ntTSL 2 BASIC19.71■□□□□ 0.75
HOXC4P09017 TSEN15-203ENST00000423085 1743 ntTSL 2 BASIC19.71■□□□□ 0.75
HOXC4P09017 MEF2D-203ENST00000368240 1905 ntTSL 1 (best) BASIC19.7■□□□□ 0.74
HOXC4P09017 TXNRD3-204ENST00000640433 1932 ntAPPRIS P4 TSL 1 (best) BASIC19.7■□□□□ 0.74
HOXC4P09017 CPNE9-202ENST00000383831 1751 ntTSL 5 BASIC19.7■□□□□ 0.74
HOXC4P09017 MPV17L2-204ENST00000599612 1408 ntAPPRIS P1 TSL 1 (best) BASIC19.7■□□□□ 0.74
HOXC4P09017 SKI-201ENST00000378536 5613 ntAPPRIS P1 TSL 1 (best) BASIC19.7■□□□□ 0.74
HOXC4P09017 ST3GAL4-204ENST00000444328 1812 ntAPPRIS ALT1 TSL 5 BASIC19.7■□□□□ 0.74
HOXC4P09017 METTL27-201ENST00000297873 941 ntAPPRIS P1 TSL 1 (best) BASIC19.7■□□□□ 0.74
HOXC4P09017 PSMG1-202ENST00000380900 907 ntTSL 1 (best) BASIC19.7■□□□□ 0.74
HOXC4P09017 AC080023.1-201ENST00000526906 803 ntTSL 2 BASIC19.7■□□□□ 0.74
HOXC4P09017 SIVA1-203ENST00000535554 1244 ntAPPRIS ALT1 TSL 2 BASIC19.7■□□□□ 0.74
HOXC4P09017 AC027682.2-201ENST00000563083 336 ntTSL 5 BASIC19.7■□□□□ 0.74
HOXC4P09017 AC020922.2-201ENST00000596786 359 ntTSL 4 BASIC19.7■□□□□ 0.74
HOXC4P09017 DPP3P2-201ENST00000416030 1696 ntBASIC19.7■□□□□ 0.74
HOXC4P09017 SYNDIG1-201ENST00000376862 2522 ntAPPRIS P1 TSL 1 (best) BASIC19.7■□□□□ 0.74
HOXC4P09017 ITGB1BP1-203ENST00000359712 2126 ntTSL 2 BASIC19.7■□□□□ 0.74
HOXC4P09017 TMEM206-205ENST00000535273 2119 ntTSL 2 BASIC19.7■□□□□ 0.74
HOXC4P09017 P2RY11-201ENST00000321826 1943 ntAPPRIS P1 TSL 1 (best) BASIC19.7■□□□□ 0.74
HOXC4P09017 FMNL2-201ENST00000288670 5575 ntAPPRIS P1 TSL 1 (best) BASIC19.7■□□□□ 0.74
HOXC4P09017 AKT2-210ENST00000424901 5170 ntTSL 5 BASIC19.7■□□□□ 0.74
HOXC4P09017 C20orf27-201ENST00000217195 1302 ntTSL 2 BASIC19.7■□□□□ 0.74
HOXC4P09017 SAMD10-201ENST00000369886 2181 ntAPPRIS P1 TSL 1 (best) BASIC19.7■□□□□ 0.74
HOXC4P09017 NDUFAF3-202ENST00000326925 2012 ntAPPRIS P1 TSL 1 (best) BASIC19.69■□□□□ 0.74
HOXC4P09017 FOXI1-202ENST00000449804 2011 ntTSL 1 (best) BASIC19.69■□□□□ 0.74
HOXC4P09017 HAUS4-204ENST00000490506 1447 ntTSL 1 (best) BASIC19.69■□□□□ 0.74
HOXC4P09017 HOXC13-AS-201ENST00000512916 1408 ntTSL 3 BASIC19.69■□□□□ 0.74
HOXC4P09017 P2RX5-201ENST00000225328 2309 ntAPPRIS P3 TSL 1 (best) BASIC19.69■□□□□ 0.74
HOXC4P09017 ESX1-201ENST00000372588 1495 ntAPPRIS P1 TSL 1 (best) BASIC19.69■□□□□ 0.74
HOXC4P09017 BABAM1-208ENST00000598188 1470 ntAPPRIS P3 TSL 1 (best) BASIC19.69■□□□□ 0.74
HOXC4P09017 LGALS9C-201ENST00000328114 1730 ntAPPRIS P2 TSL 1 (best) BASIC19.69■□□□□ 0.74
HOXC4P09017 MDK-205ENST00000405308 1166 ntAPPRIS P2 TSL 2 BASIC19.69■□□□□ 0.74
HOXC4P09017 GLYCTK-205ENST00000473032 935 ntTSL 1 (best) BASIC19.69■□□□□ 0.74
HOXC4P09017 LIME1-205ENST00000480139 819 ntAPPRIS ALT2 TSL 3 BASIC19.69■□□□□ 0.74
HOXC4P09017 SCRN2-201ENST00000290216 1548 ntAPPRIS P1 TSL 1 (best) BASIC19.69■□□□□ 0.74
HOXC4P09017 DND1-201ENST00000542735 1605 ntAPPRIS P1 TSL 1 (best) BASIC19.69■□□□□ 0.74
HOXC4P09017 RAP2A-201ENST00000245304 5487 ntAPPRIS P1 TSL 1 (best) BASIC19.69■□□□□ 0.74
HOXC4P09017 SLCO3A1-202ENST00000424469 2705 ntTSL 1 (best) BASIC19.68■□□□□ 0.74
HOXC4P09017 C1QL4-201ENST00000334221 2071 ntAPPRIS P1 TSL 1 (best) BASIC19.68■□□□□ 0.74
HOXC4P09017 CIRBP-215ENST00000588030 1509 ntAPPRIS P3 TSL 5 BASIC19.68■□□□□ 0.74
HOXC4P09017 METTL21A-204ENST00000425132 869 ntTSL 2 BASIC19.68■□□□□ 0.74
HOXC4P09017 AC012618.2-201ENST00000428058 849 ntBASIC19.68■□□□□ 0.74
HOXC4P09017 AC069185.1-201ENST00000531395 811 ntTSL 3 BASIC19.68■□□□□ 0.74
HOXC4P09017 TGIF1-219ENST00000551541 990 ntTSL 2 BASIC19.68■□□□□ 0.74
HOXC4P09017 AC068987.1-201ENST00000562996 427 ntTSL 3 BASIC19.68■□□□□ 0.74
HOXC4P09017 NOXO1-205ENST00000566005 1144 ntTSL 1 (best) BASIC19.68■□□□□ 0.74
HOXC4P09017 Z99916.2-201ENST00000604037 246 ntBASIC19.68■□□□□ 0.74
HOXC4P09017 CORO1B-210ENST00000627576 960 ntTSL 5 BASIC19.68■□□□□ 0.74
HOXC4P09017 ACADVL-202ENST00000350303 2191 ntTSL 1 (best) BASIC19.68■□□□□ 0.74
HOXC4P09017 FAM58A-204ENST00000576892 1306 ntAPPRIS ALT2 TSL 1 (best) BASIC19.68■□□□□ 0.74
HOXC4P09017 RTP5-201ENST00000343216 2296 ntAPPRIS P1 TSL 1 (best) BASIC19.68■□□□□ 0.74
HOXC4P09017 SMTNL2-202ENST00000389313 2280 ntAPPRIS P1 TSL 1 (best) BASIC19.68■□□□□ 0.74
HOXC4P09017 RALGPS1-204ENST00000373436 1667 ntTSL 1 (best) BASIC19.68■□□□□ 0.74
HOXC4P09017 PPP1R12C-201ENST00000263433 2924 ntAPPRIS P1 TSL 1 (best) BASIC19.68■□□□□ 0.74
HOXC4P09017 OSR2-202ENST00000435298 1736 ntTSL 1 (best) BASIC19.68■□□□□ 0.74
HOXC4P09017 AL135905.2-201ENST00000584934 1404 ntBASIC19.68■□□□□ 0.74
HOXC4P09017 SLC35E4-202ENST00000406566 2081 ntTSL 1 (best) BASIC19.67■□□□□ 0.74
HOXC4P09017 HFE2-202ENST00000357836 2123 ntTSL 1 (best) BASIC19.67■□□□□ 0.74
HOXC4P09017 AC124283.5-201ENST00000624661 1809 ntBASIC19.67■□□□□ 0.74
HOXC4P09017 TNIP1-205ENST00000518977 2200 ntAPPRIS ALT2 TSL 1 (best) BASIC19.67■□□□□ 0.74
HOXC4P09017 CXCL3-201ENST00000296026 1075 ntAPPRIS P1 TSL 1 (best) BASIC19.67■□□□□ 0.74
HOXC4P09017 VKORC1-204ENST00000394971 664 ntTSL 5 BASIC19.67■□□□□ 0.74
HOXC4P09017 TSPAN4-209ENST00000409543 1031 ntAPPRIS P1 TSL 5 BASIC19.67■□□□□ 0.74
HOXC4P09017 RNF135-204ENST00000443677 1261 ntTSL 1 (best) BASIC19.67■□□□□ 0.74
Retrieved 100 of 98,524 protein–RNA pairs in 26.4 ms