Protein–RNA interactions for Protein: O75940

SMNDC1, Survival of motor neuron-related-splicing factor 30, humanhuman

Known RBP eCLIP

Length 238 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SMNDC1O75940 HNRNPH1-204ENST00000442819 2248 ntAPPRIS P1 TSL 1 (best) BASIC15.52■□□□□ 0.074e-11■■□□□ 14.4
SMNDC1O75940 HNRNPH1-203ENST00000393432 2279 ntAPPRIS P1 TSL 1 (best) BASIC15.5■□□□□ 0.074e-11■■□□□ 14.4
SMNDC1O75940 HNRNPH1-202ENST00000356731 3667 ntAPPRIS P1 TSL 2 BASIC14.55□□□□□ -0.084e-11■■□□□ 14.4
SMNDC1O75940 HNRNPH1-223ENST00000514332 2444 ntTSL 212.52□□□□□ -0.44e-11■■□□□ 14.4
SMNDC1O75940 RHAG-202ENST00000371175 1912 ntAPPRIS P2 TSL 1 (best) BASIC10.28□□□□□ -0.769e-8■■□□□ 14.4
SMNDC1O75940 RHAG-201ENST00000229810 1283 ntAPPRIS ALT1 TSL 5 BASIC9.91□□□□□ -0.829e-8■■□□□ 14.4
SMNDC1O75940 RHAG-203ENST00000618248 1203 ntTSL 5 BASIC8.76□□□□□ -1.019e-8■■□□□ 14.4
SMNDC1O75940 HNRNPH1-201ENST00000329433 2114 ntTSL 2 BASIC16.1■□□□□ 0.173e-15■■□□□ 14.4
SMNDC1O75940 HNRNPH1-216ENST00000510411 2105 ntTSL 5 BASIC13.96□□□□□ -0.183e-15■■□□□ 14.4
SMNDC1O75940 HNRNPH1-218ENST00000510678 1996 ntTSL 513.31□□□□□ -0.283e-15■■□□□ 14.4
SMNDC1O75940 SNHG21-204ENST00000559366 674 ntTSL 2 BASIC12.61□□□□□ -0.396e-24■■□□□ 14.4
SMNDC1O75940 SNHG21-202ENST00000558174 725 ntTSL 212.61□□□□□ -0.396e-24■■□□□ 14.4
SMNDC1O75940 SNHG21-205ENST00000561107 790 ntTSL 2 BASIC11.28□□□□□ -0.66e-24■■□□□ 14.4
SMNDC1O75940 GON4L-202ENST00000361040 5118 ntTSL 1 (best) BASIC11.23□□□□□ -0.617e-10■■□□□ 14.4
SMNDC1O75940 GON4L-218ENST00000620426 5506 ntTSL 1 (best) BASIC8.93□□□□□ -0.987e-10■■□□□ 14.4
SMNDC1O75940 GON4L-203ENST00000368331 7823 ntAPPRIS ALT2 TSL 1 (best) BASIC8.69□□□□□ -1.027e-10■■□□□ 14.4
SMNDC1O75940 GON4L-219ENST00000622608 4801 ntTSL 5 BASIC8.64□□□□□ -1.037e-10■■□□□ 14.4
SMNDC1O75940 GON4L-217ENST00000615926 7771 ntAPPRIS ALT2 TSL 1 (best) BASIC8.54□□□□□ -1.047e-10■■□□□ 14.4
SMNDC1O75940 GON4L-209ENST00000471341 5097 ntTSL 27.7□□□□□ -1.187e-10■■□□□ 14.4
SMNDC1O75940 GON4L-201ENST00000271883 7138 ntAPPRIS P3 TSL 5 BASIC7.57□□□□□ -1.27e-10■■□□□ 14.4
SMNDC1O75940 GON4L-204ENST00000437809 7713 ntAPPRIS P3 TSL 5 BASIC7.56□□□□□ -1.27e-10■■□□□ 14.4
SMNDC1O75940 GON4L-206ENST00000466224 690 ntTSL 26.46□□□□□ -1.387e-10■■□□□ 14.4
SMNDC1O75940 GON4L-211ENST00000482386 889 ntTSL 1 (best)5.33□□□□□ -1.567e-10■■□□□ 14.4
SMNDC1O75940 SCARNA15-201ENST00000607520 4325 ntBASIC4.85□□□□□ -1.636e-24■■□□□ 14.4
SMNDC1O75940 SCARNA15-202ENST00000516881 127 ntBASIC3.2□□□□□ -1.96e-24■■□□□ 14.4
SMNDC1O75940 FAM178B-204ENST00000490605 2710 ntAPPRIS ALT2 TSL 5 BASIC17.84■□□□□ 0.451e-6■■□□□ 14.4
SMNDC1O75940 FAM178B-201ENST00000393526 1004 ntAPPRIS P3 TSL 1 (best) BASIC11.55□□□□□ -0.561e-6■■□□□ 14.4
SMNDC1O75940 FAM178B-202ENST00000470789 722 ntTSL 1 (best)10.25□□□□□ -0.771e-6■■□□□ 14.4
SMNDC1O75940 RPL13A-204ENST00000472481 728 ntTSL 213.53□□□□□ -0.242e-87■■□□□ 14.4
SMNDC1O75940 HNRNPH1-228ENST00000515714 690 ntTSL 416.9■□□□□ 0.32e-10■■□□□ 14.4
SMNDC1O75940 HNRNPH1-208ENST00000503664 569 ntTSL 414.85□□□□□ -0.032e-10■■□□□ 14.4
SMNDC1O75940 HNRNPH1-219ENST00000512273 501 ntTSL 47.73□□□□□ -1.172e-10■■□□□ 14.4
SMNDC1O75940 HSP90B1-209ENST00000552051 581 ntTSL 27.96□□□□□ -1.142e-28■■□□□ 14.3
SMNDC1O75940 DNPEP-201ENST00000273075 2425 ntAPPRIS P3 TSL 1 (best) BASIC23.45■■□□□ 1.347e-6■■□□□ 14.3
SMNDC1O75940 INPPL1-201ENST00000298229 4733 ntAPPRIS P1 TSL 1 (best) BASIC21.94■■□□□ 1.17e-6■■□□□ 14.3
SMNDC1O75940 MAP4K3-204ENST00000429397 689 ntTSL 321.68■■□□□ 1.067e-6■■□□□ 14.3
SMNDC1O75940 INTS11-208ENST00000435064 2148 ntAPPRIS P1 TSL 1 (best) BASIC21.02■□□□□ 0.963e-6■■□□□ 14.3
SMNDC1O75940 NKD1-202ENST00000564336 477 ntTSL 320.22■□□□□ 0.837e-6■■□□□ 14.3
SMNDC1O75940 INTS11-223ENST00000498173 1589 ntTSL 219.75■□□□□ 0.752e-7■■□□□ 14.3
SMNDC1O75940 WDR73-215ENST00000560182 542 ntTSL 419.72■□□□□ 0.757e-6■■□□□ 14.3
SMNDC1O75940 DNPEP-204ENST00000373966 1875 ntTSL 519.27■□□□□ 0.687e-6■■□□□ 14.3
SMNDC1O75940 INTS11-205ENST00000429572 1104 ntTSL 2 BASIC18.69■□□□□ 0.582e-7■■□□□ 14.3
SMNDC1O75940 INTS11-202ENST00000411962 1832 ntTSL 5 BASIC18.67■□□□□ 0.583e-6■■□□□ 14.3
SMNDC1O75940 INTS11-250ENST00000620829 1862 ntTSL 2 BASIC18.65■□□□□ 0.583e-6■■□□□ 14.3
SMNDC1O75940 INTS11-221ENST00000496353 2428 ntTSL 218.53■□□□□ 0.562e-7■■□□□ 14.3
SMNDC1O75940 DNPEP-218ENST00000521459 714 ntTSL 517.9■□□□□ 0.467e-6■■□□□ 14.3
SMNDC1O75940 INTS11-209ENST00000450926 1839 ntTSL 5 BASIC17.79■□□□□ 0.443e-6■■□□□ 14.3
SMNDC1O75940 DNPEP-203ENST00000373963 1657 ntTSL 517.72■□□□□ 0.437e-6■■□□□ 14.3
SMNDC1O75940 MAP4K3-202ENST00000341681 4271 ntTSL 1 (best) BASIC17.27■□□□□ 0.367e-6■■□□□ 14.3
SMNDC1O75940 MAP4K3-201ENST00000263881 4362 ntAPPRIS P1 TSL 1 (best) BASIC17.14■□□□□ 0.337e-6■■□□□ 14.3
SMNDC1O75940 INTS11-210ENST00000458452 2571 ntTSL 217.09■□□□□ 0.333e-6■■□□□ 14.3
SMNDC1O75940 INTS11-233ENST00000527098 2004 ntTSL 217■□□□□ 0.313e-6■■□□□ 14.3
SMNDC1O75940 INTS11-235ENST00000527719 750 ntTSL 517■□□□□ 0.313e-6■■□□□ 14.3
SMNDC1O75940 INTS11-230ENST00000526332 579 ntTSL 416.79■□□□□ 0.283e-6■■□□□ 14.3
SMNDC1O75940 INTS11-247ENST00000540437 2629 ntTSL 2 BASIC16.66■□□□□ 0.263e-6■■□□□ 14.3
SMNDC1O75940 INTS11-249ENST00000618806 1523 ntTSL 2 BASIC16.63■□□□□ 0.253e-6■■□□□ 14.3
SMNDC1O75940 INTS11-201ENST00000323275 2450 ntTSL 1 (best)16.63■□□□□ 0.253e-6■■□□□ 14.3
SMNDC1O75940 INTS11-243ENST00000532772 1618 ntTSL 516.23■□□□□ 0.193e-6■■□□□ 14.3
SMNDC1O75940 INTS11-203ENST00000419704 1798 ntTSL 2 BASIC16.18■□□□□ 0.183e-6■■□□□ 14.3
SMNDC1O75940 SEMA3B-211ENST00000612509 1061 ntTSL 516.17■□□□□ 0.187e-6■■□□□ 14.3
SMNDC1O75940 DNPEP-206ENST00000429013 896 ntTSL 516.06■□□□□ 0.167e-6■■□□□ 14.3
SMNDC1O75940 AL121845.2-202ENST00000476221 446 ntTSL 515.97■□□□□ 0.151e-10■■□□□ 14.3
SMNDC1O75940 INTS11-218ENST00000488042 1134 ntTSL 215.78■□□□□ 0.123e-6■■□□□ 14.3
SMNDC1O75940 INTS11-242ENST00000531377 816 ntTSL 515.75■□□□□ 0.115e-6■■□□□ 14.3
SMNDC1O75940 ARAP1-221ENST00000546293 702 ntTSL 315.65■□□□□ 0.17e-6■■□□□ 14.3
SMNDC1O75940 INPPL1-207ENST00000538751 4656 ntTSL 1 (best) BASIC15.65■□□□□ 0.17e-6■■□□□ 14.3
SMNDC1O75940 INTS11-237ENST00000530031 800 ntTSL 515.56■□□□□ 0.083e-6■■□□□ 14.3
SMNDC1O75940 ARAP1-210ENST00000465814 5612 ntTSL 215.53■□□□□ 0.087e-6■■□□□ 14.3
SMNDC1O75940 INTS11-207ENST00000434694 1056 ntTSL 515.48■□□□□ 0.073e-6■■□□□ 14.3
SMNDC1O75940 RECQL4-205ENST00000532846 1055 ntTSL 515.31■□□□□ 0.047e-6■■□□□ 14.3
SMNDC1O75940 CUL7-203ENST00000535468 5504 ntAPPRIS ALT2 TSL 2 BASIC15.26■□□□□ 0.037e-6■■□□□ 14.3
SMNDC1O75940 INTS11-232ENST00000526904 551 ntTSL 415□□□□□ -0.011e-6■■□□□ 14.3
SMNDC1O75940 ARAP1-203ENST00000393605 4778 ntAPPRIS ALT2 TSL 1 (best) BASIC14.81□□□□□ -0.047e-6■■□□□ 14.3
SMNDC1O75940 INTS11-204ENST00000421495 1868 ntTSL 2 BASIC14.77□□□□□ -0.053e-6■■□□□ 14.3
SMNDC1O75940 NPM1-201ENST00000296930 1758 ntAPPRIS P1 TSL 1 (best) BASIC14.7□□□□□ -0.061e-8■■□□□ 14.3
SMNDC1O75940 INPPL1-213ENST00000541756 4649 ntTSL 5 BASIC14.38□□□□□ -0.117e-6■■□□□ 14.3
SMNDC1O75940 INPPL1-208ENST00000540329 741 ntTSL 314.28□□□□□ -0.127e-6■■□□□ 14.3
SMNDC1O75940 ARAP1-202ENST00000359373 5767 ntAPPRIS ALT2 TSL 2 BASIC13.94□□□□□ -0.187e-6■■□□□ 14.3
SMNDC1O75940 ARAP1-201ENST00000334211 4942 ntAPPRIS P3 TSL 1 (best) BASIC13.86□□□□□ -0.197e-6■■□□□ 14.3
SMNDC1O75940 INTS11-206ENST00000430786 849 ntTSL 513.82□□□□□ -0.23e-6■■□□□ 14.3
SMNDC1O75940 AL121845.2-201ENST00000467211 252 ntAPPRIS P1 TSL 3 BASIC13.77□□□□□ -0.211e-10■■□□□ 14.3
SMNDC1O75940 INTS11-236ENST00000528879 1524 ntTSL 513.71□□□□□ -0.213e-6■■□□□ 14.3
SMNDC1O75940 INTS11-248ENST00000545578 2263 ntTSL 2 BASIC13.54□□□□□ -0.243e-6■■□□□ 14.3
SMNDC1O75940 ARAP1-211ENST00000495878 2758 ntTSL 1 (best)13.54□□□□□ -0.247e-6■■□□□ 14.3
SMNDC1O75940 ARAP1-209ENST00000455638 2683 ntTSL 5 BASIC13.52□□□□□ -0.257e-6■■□□□ 14.3
SMNDC1O75940 AKR1B1-203ENST00000434222 1852 ntTSL 513.46□□□□□ -0.267e-6■■□□□ 14.3
SMNDC1O75940 ARAP1-204ENST00000393609 5145 ntAPPRIS ALT2 TSL 2 BASIC13.33□□□□□ -0.287e-6■■□□□ 14.3
SMNDC1O75940 INTS11-227ENST00000525603 738 ntTSL 312.98□□□□□ -0.332e-7■■□□□ 14.3
SMNDC1O75940 AKR1B1-205ENST00000465351 1930 ntTSL 1 (best)12.67□□□□□ -0.387e-6■■□□□ 14.3
SMNDC1O75940 POLE-201ENST00000320574 7840 ntAPPRIS P2 TSL 1 (best) BASIC12.53□□□□□ -0.47e-6■■□□□ 14.3
SMNDC1O75940 DNPEP-205ENST00000373972 1578 ntTSL 2 BASIC12.35□□□□□ -0.437e-6■■□□□ 14.3
SMNDC1O75940 INTS11-229ENST00000526113 591 ntTSL 512.34□□□□□ -0.433e-6■■□□□ 14.3
SMNDC1O75940 POLE-207ENST00000535270 6800 ntAPPRIS ALT2 TSL 1 (best) BASIC12.22□□□□□ -0.457e-6■■□□□ 14.3
SMNDC1O75940 ZNF3-206ENST00000415068 543 ntTSL 1 (best)12.07□□□□□ -0.487e-6■■□□□ 14.3
SMNDC1O75940 DNPEP-209ENST00000457935 1091 ntTSL 512□□□□□ -0.497e-6■■□□□ 14.3
SMNDC1O75940 CUL7-201ENST00000265348 5254 ntAPPRIS P3 TSL 1 (best) BASIC12□□□□□ -0.497e-6■■□□□ 14.3
SMNDC1O75940 CHD2-223ENST00000636306 1755 ntTSL 511.97□□□□□ -0.493e-7■■□□□ 14.3
SMNDC1O75940 DNPEP-220ENST00000523282 1662 ntAPPRIS ALT2 TSL 2 BASIC11.64□□□□□ -0.557e-6■■□□□ 14.3
SMNDC1O75940 GIGYF2-209ENST00000423659 2329 ntTSL 511.57□□□□□ -0.567e-6■■□□□ 14.3
SMNDC1O75940 ZNF3-209ENST00000441298 574 ntTSL 411.55□□□□□ -0.567e-6■■□□□ 14.3
Retrieved 100 of 11,362 protein–RNA pairs in 165.1 ms