Protein–RNA interactions for Protein: O75351

VPS4B, Vacuolar protein sorting-associated protein 4B, humanhuman

Predictions only

Length 444 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VPS4BO75351 NCAPD3-204ENST00000526422 1060 ntAPPRIS ALT2 TSL 2 BASIC19.69■□□□□ 0.74
VPS4BO75351 SCO2-203ENST00000535425 1002 ntAPPRIS P1 TSL 2 BASIC19.69■□□□□ 0.74
VPS4BO75351 ULK4P1-204ENST00000565949 721 ntTSL 4 BASIC19.69■□□□□ 0.74
VPS4BO75351 AC110285.4-201ENST00000572590 424 ntTSL 3 BASIC19.69■□□□□ 0.74
VPS4BO75351 MFSD14C-203ENST00000602917 786 ntAPPRIS P5 TSL 1 (best) BASIC19.69■□□□□ 0.74
VPS4BO75351 MARK1-203ENST00000402574 5273 ntTSL 1 (best) BASIC19.69■□□□□ 0.74
VPS4BO75351 POLDIP2-202ENST00000618887 1524 ntTSL 2 BASIC19.69■□□□□ 0.74
VPS4BO75351 RELL2-207ENST00000521367 1780 ntTSL 5 BASIC19.69■□□□□ 0.74
VPS4BO75351 TTLL7-214ENST00000610996 2028 ntTSL 5 BASIC19.69■□□□□ 0.74
VPS4BO75351 UBAP1-204ENST00000625521 2029 ntTSL 2 BASIC19.69■□□□□ 0.74
VPS4BO75351 NYX-202ENST00000378220 2297 ntAPPRIS P1 TSL 1 (best) BASIC19.69■□□□□ 0.74
VPS4BO75351 RIMBP3B-201ENST00000620804 6105 ntAPPRIS P1 BASIC19.69■□□□□ 0.74
VPS4BO75351 SOX8-201ENST00000293894 3049 ntAPPRIS P1 TSL 1 (best) BASIC19.69■□□□□ 0.74
VPS4BO75351 APAF1-210ENST00000551964 5444 ntAPPRIS P4 TSL 1 (best) BASIC19.69■□□□□ 0.74
VPS4BO75351 PEX6-201ENST00000244546 2696 ntTSL 1 (best) BASIC19.69■□□□□ 0.74
VPS4BO75351 EPS8L1-209ENST00000588359 1407 ntTSL 5 BASIC19.68■□□□□ 0.74
VPS4BO75351 TMEM189-201ENST00000371650 2222 ntAPPRIS ALT1 TSL 1 (best) BASIC19.68■□□□□ 0.74
VPS4BO75351 POU3F2-201ENST00000328345 4879 ntAPPRIS P1 BASIC19.68■□□□□ 0.74
VPS4BO75351 SPATA22-210ENST00000573128 1704 ntAPPRIS P1 TSL 1 (best) BASIC19.68■□□□□ 0.74
VPS4BO75351 CYP2A7-202ENST00000301146 2281 ntAPPRIS P1 TSL 1 (best) BASIC19.68■□□□□ 0.74
VPS4BO75351 AC008105.1-201ENST00000587534 2003 ntTSL 2 BASIC19.68■□□□□ 0.74
VPS4BO75351 MAP2K5-203ENST00000354498 1783 ntTSL 2 BASIC19.68■□□□□ 0.74
VPS4BO75351 POLE2-202ENST00000539565 1792 ntTSL 1 (best) BASIC19.68■□□□□ 0.74
VPS4BO75351 RTBDN-207ENST00000589272 2076 ntTSL 2 BASIC19.68■□□□□ 0.74
VPS4BO75351 NOXO1-202ENST00000356120 1539 ntAPPRIS P3 TSL 1 (best) BASIC19.68■□□□□ 0.74
VPS4BO75351 TSSC4-203ENST00000380996 1544 ntAPPRIS ALT2 TSL 1 (best) BASIC19.68■□□□□ 0.74
VPS4BO75351 RAMP1-203ENST00000404910 857 ntTSL 2 BASIC19.68■□□□□ 0.74
VPS4BO75351 FADS3-204ENST00000525588 1254 ntTSL 5 BASIC19.68■□□□□ 0.74
VPS4BO75351 AC027451.1-201ENST00000530667 553 ntTSL 4 BASIC19.68■□□□□ 0.74
VPS4BO75351 IL34-204ENST00000566361 1001 ntAPPRIS ALT2 TSL 1 (best) BASIC19.68■□□□□ 0.74
VPS4BO75351 AL512625.3-202ENST00000591993 1091 ntTSL 1 (best) BASIC19.68■□□□□ 0.74
VPS4BO75351 AC018730.2-201ENST00000598623 443 ntTSL 5 BASIC19.68■□□□□ 0.74
VPS4BO75351 FGF14-IT1-202ENST00000607251 2123 ntTSL 2 BASIC19.68■□□□□ 0.74
VPS4BO75351 DMWD-202ENST00000377735 3292 ntAPPRIS ALT2 TSL 5 BASIC19.68■□□□□ 0.74
VPS4BO75351 ISYNA1-201ENST00000338128 2420 ntAPPRIS P1 TSL 1 (best) BASIC19.68■□□□□ 0.74
VPS4BO75351 MFSD7-204ENST00000503156 1632 ntAPPRIS ALT2 TSL 5 BASIC19.68■□□□□ 0.74
VPS4BO75351 BEAN1-202ENST00000536005 1988 ntTSL 1 (best) BASIC19.68■□□□□ 0.74
VPS4BO75351 COQ10A-201ENST00000308197 1652 ntAPPRIS P3 TSL 1 (best) BASIC19.68■□□□□ 0.74
VPS4BO75351 PHLDA3-202ENST00000367311 2640 ntAPPRIS P1 TSL 1 (best) BASIC19.68■□□□□ 0.74
VPS4BO75351 MAP3K15-201ENST00000338883 4012 ntAPPRIS P1 TSL 5 BASIC19.67■□□□□ 0.74
VPS4BO75351 ARRB2-202ENST00000346341 1769 ntTSL 2 BASIC19.67■□□□□ 0.74
VPS4BO75351 PRSS33-204ENST00000576886 1755 ntTSL 1 (best) BASIC19.67■□□□□ 0.74
VPS4BO75351 PELI3-202ENST00000349459 2783 ntAPPRIS P1 TSL 1 (best) BASIC19.67■□□□□ 0.74
VPS4BO75351 TPD52L1-201ENST00000304877 1468 ntAPPRIS ALT2 TSL 2 BASIC19.67■□□□□ 0.74
VPS4BO75351 ETV7-203ENST00000373737 1488 ntAPPRIS ALT2 TSL 1 (best) BASIC19.67■□□□□ 0.74
VPS4BO75351 SYNC-201ENST00000373484 1824 ntAPPRIS ALT2 TSL 2 BASIC19.67■□□□□ 0.74
VPS4BO75351 ENOSF1-201ENST00000251101 1867 ntAPPRIS P1 TSL 1 (best) BASIC19.67■□□□□ 0.74
VPS4BO75351 GSTM3-202ENST00000361066 1565 ntAPPRIS P1 TSL 1 (best) BASIC19.67■□□□□ 0.74
VPS4BO75351 EFNA2-201ENST00000215368 949 ntAPPRIS P1 TSL 1 (best) BASIC19.67■□□□□ 0.74
VPS4BO75351 CAPN10-202ENST00000270364 1267 ntTSL 2 BASIC19.67■□□□□ 0.74
VPS4BO75351 KRT18P29-201ENST00000397031 1267 ntBASIC19.67■□□□□ 0.74
VPS4BO75351 LINC02531-201ENST00000404689 593 ntTSL 5 BASIC19.67■□□□□ 0.74
VPS4BO75351 C2orf82-203ENST00000409533 561 ntAPPRIS P2 TSL 4 BASIC19.67■□□□□ 0.74
VPS4BO75351 PTPA-214ENST00000423100 988 ntTSL 2 BASIC19.67■□□□□ 0.74
VPS4BO75351 AC010141.2-201ENST00000452426 721 ntBASIC19.67■□□□□ 0.74
VPS4BO75351 AC106820.5-201ENST00000566085 789 ntTSL 3 BASIC19.67■□□□□ 0.74
VPS4BO75351 IGFBP3-210ENST00000613132 2412 ntTSL 5 BASIC19.67■□□□□ 0.74
VPS4BO75351 LEFTY2-202ENST00000420304 2085 ntTSL 2 BASIC19.67■□□□□ 0.74
VPS4BO75351 PKMYT1-204ENST00000440027 2061 ntTSL 2 BASIC19.67■□□□□ 0.74
VPS4BO75351 PLEKHM2-202ENST00000375799 4122 ntAPPRIS P2 TSL 1 (best) BASIC19.67■□□□□ 0.74
VPS4BO75351 PDZD3-201ENST00000322712 2204 ntTSL 1 (best) BASIC19.67■□□□□ 0.74
VPS4BO75351 SUMO3-201ENST00000332859 1807 ntAPPRIS P1 TSL 1 (best) BASIC19.67■□□□□ 0.74
VPS4BO75351 IQCJ-SCHIP1-204ENST00000485419 2445 ntAPPRIS ALT2 TSL 2 BASIC19.66■□□□□ 0.74
VPS4BO75351 FLT1-209ENST00000639477 6337 ntTSL 5 BASIC19.66■□□□□ 0.74
VPS4BO75351 LINC01558-202ENST00000495520 1652 ntTSL 2 BASIC19.66■□□□□ 0.74
VPS4BO75351 FLT1-207ENST00000615840 6453 ntTSL 1 (best) BASIC19.66■□□□□ 0.74
VPS4BO75351 PRPS1-203ENST00000372428 1748 ntTSL 2 BASIC19.66■□□□□ 0.74
VPS4BO75351 CAPN12-201ENST00000328867 2762 ntAPPRIS P1 TSL 1 (best) BASIC19.66■□□□□ 0.74
VPS4BO75351 DVL1-204ENST00000610709 2268 ntTSL 2 BASIC19.66■□□□□ 0.74
VPS4BO75351 EPHX3-202ENST00000435261 1771 ntAPPRIS P1 TSL 1 (best) BASIC19.66■□□□□ 0.74
VPS4BO75351 MAL-201ENST00000309988 1112 ntAPPRIS P1 TSL 1 (best) BASIC19.66■□□□□ 0.74
VPS4BO75351 PARP1-202ENST00000366792 553 ntTSL 3 BASIC19.66■□□□□ 0.74
VPS4BO75351 GUSBP6-202ENST00000438529 1198 ntBASIC19.66■□□□□ 0.74
VPS4BO75351 AC093833.1-201ENST00000442821 553 ntTSL 5 BASIC19.66■□□□□ 0.74
VPS4BO75351 UMAD1-202ENST00000463725 559 ntTSL 4 BASIC19.66■□□□□ 0.74
VPS4BO75351 KHDRBS1-204ENST00000492989 1215 ntTSL 1 (best) BASIC19.66■□□□□ 0.74
VPS4BO75351 ATPIF1-204ENST00000497986 599 ntTSL 2 BASIC19.66■□□□□ 0.74
VPS4BO75351 NDUFS3-207ENST00000529276 558 ntTSL 2 BASIC19.66■□□□□ 0.74
VPS4BO75351 PFKFB3-219ENST00000640683 2311 ntTSL 5 BASIC19.66■□□□□ 0.74
VPS4BO75351 ANTXR2-202ENST00000346652 1343 ntTSL 1 (best) BASIC19.66■□□□□ 0.74
VPS4BO75351 FAM83H-201ENST00000388913 5654 ntAPPRIS P1 TSL 5 BASIC19.66■□□□□ 0.74
VPS4BO75351 ACVR1C-201ENST00000243349 8994 ntAPPRIS P1 TSL 1 (best) BASIC19.66■□□□□ 0.74
VPS4BO75351 TOLLIP-201ENST00000263646 2283 ntTSL 5 BASIC19.65■□□□□ 0.74
VPS4BO75351 ADGRA2-201ENST00000315215 6270 ntTSL 1 (best) BASIC19.65■□□□□ 0.74
VPS4BO75351 UPF1-201ENST00000262803 5348 ntAPPRIS P1 TSL 1 (best) BASIC19.65■□□□□ 0.74
VPS4BO75351 WEE1-202ENST00000450114 2799 ntAPPRIS P1 TSL 1 (best) BASIC19.65■□□□□ 0.74
VPS4BO75351 CRTAC1-203ENST00000370597 2890 ntTSL 1 (best) BASIC19.65■□□□□ 0.74
VPS4BO75351 USP48-201ENST00000308271 4595 ntAPPRIS P1 TSL 1 (best) BASIC19.65■□□□□ 0.74
VPS4BO75351 ZNRF1-202ENST00000335325 4620 ntAPPRIS P1 TSL 1 (best) BASIC19.65■□□□□ 0.74
VPS4BO75351 TRAPPC5-201ENST00000317378 790 ntAPPRIS P1 TSL 1 (best) BASIC19.65■□□□□ 0.74
VPS4BO75351 DUX4L16-201ENST00000555130 1264 ntBASIC19.65■□□□□ 0.74
VPS4BO75351 C19orf84-201ENST00000570516 788 ntAPPRIS ALT2 TSL 1 (best) BASIC19.65■□□□□ 0.74
VPS4BO75351 ARL16-209ENST00000573715 763 ntTSL 3 BASIC19.65■□□□□ 0.74
VPS4BO75351 ARL16-211ENST00000576135 694 ntTSL 3 BASIC19.65■□□□□ 0.74
VPS4BO75351 AC008687.6-201ENST00000596318 630 ntBASIC19.65■□□□□ 0.74
VPS4BO75351 TMEM44-203ENST00000381975 2197 ntTSL 1 (best) BASIC19.65■□□□□ 0.74
VPS4BO75351 MSANTD1-203ENST00000507492 2289 ntAPPRIS ALT2 TSL 1 (best) BASIC19.65■□□□□ 0.74
VPS4BO75351 SRSF4-201ENST00000373795 2387 ntAPPRIS P2 TSL 1 (best) BASIC19.65■□□□□ 0.74
VPS4BO75351 GRM5-202ENST00000305447 4571 ntAPPRIS ALT2 TSL 1 (best) BASIC19.65■□□□□ 0.74
VPS4BO75351 DALRD3-201ENST00000313778 1968 ntTSL 2 BASIC19.64■□□□□ 0.74
Retrieved 100 of 98,524 protein–RNA pairs in 31 ms