Protein–RNA interactions for Protein: O75112

LDB3, LIM domain-binding protein 3, humanhuman

Predictions only

Length 727 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LDB3O75112 XBP1-203ENST00000403532 1824 ntAPPRIS ALT1 TSL 3 BASIC18.95■□□□□ 0.62
LDB3O75112 KRT3-201ENST00000417996 2319 ntAPPRIS P1 TSL 1 (best) BASIC18.95■□□□□ 0.62
LDB3O75112 SMIM10L2B-201ENST00000433425 2737 ntAPPRIS P1 TSL 1 (best) BASIC18.94■□□□□ 0.62
LDB3O75112 AL391422.3-201ENST00000603791 2761 ntBASIC18.94■□□□□ 0.62
LDB3O75112 UNKL-205ENST00000397464 2180 ntTSL 2 BASIC18.94■□□□□ 0.62
LDB3O75112 AKAIN1-201ENST00000434239 575 ntAPPRIS P1 TSL 2 BASIC18.94■□□□□ 0.62
LDB3O75112 AC073896.1-201ENST00000549318 937 ntAPPRIS P1 TSL 5 BASIC18.94■□□□□ 0.62
LDB3O75112 AC090527.2-201ENST00000564080 1060 ntAPPRIS P1 TSL 3 BASIC18.94■□□□□ 0.62
LDB3O75112 MAPK14-210ENST00000622903 1003 ntTSL 5 BASIC18.94■□□□□ 0.62
LDB3O75112 CHRNB2-205ENST00000637900 2390 ntAPPRIS ALT1 TSL 5 BASIC18.94■□□□□ 0.62
LDB3O75112 RDX-202ENST00000405097 2761 ntTSL 1 (best) BASIC18.94■□□□□ 0.62
LDB3O75112 ADRA1A-203ENST00000380572 1697 ntTSL 1 (best) BASIC18.94■□□□□ 0.62
LDB3O75112 P4HB-201ENST00000331483 2603 ntAPPRIS P1 TSL 1 (best) BASIC18.94■□□□□ 0.62
LDB3O75112 PHB2-201ENST00000399433 1308 ntAPPRIS ALT1 TSL 2 BASIC18.94■□□□□ 0.62
LDB3O75112 ZNF664-207ENST00000539644 5108 ntAPPRIS P1 TSL 1 (best) BASIC18.94■□□□□ 0.62
LDB3O75112 TOR2A-203ENST00000373284 1523 ntAPPRIS P1 TSL 1 (best) BASIC18.94■□□□□ 0.62
LDB3O75112 MAPT-210ENST00000535772 5718 ntTSL 5 BASIC18.94■□□□□ 0.62
LDB3O75112 SPATA22-210ENST00000573128 1704 ntAPPRIS P1 TSL 1 (best) BASIC18.94■□□□□ 0.62
LDB3O75112 LINC01521-201ENST00000504184 1943 ntBASIC18.94■□□□□ 0.62
LDB3O75112 KREMEN2-201ENST00000303746 2326 ntAPPRIS P4 TSL 1 (best) BASIC18.94■□□□□ 0.62
LDB3O75112 SMIM3-201ENST00000526627 2332 ntAPPRIS P1 TSL 1 (best) BASIC18.94■□□□□ 0.62
LDB3O75112 SLC35A3-222ENST00000640715 1989 ntTSL 5 BASIC18.93■□□□□ 0.62
LDB3O75112 NTN5-201ENST00000270235 1836 ntAPPRIS P1 TSL 1 (best) BASIC18.93■□□□□ 0.62
LDB3O75112 STAU2-229ENST00000524300 3065 ntAPPRIS P4 TSL 2 BASIC18.93■□□□□ 0.62
LDB3O75112 HGH1-201ENST00000347708 2531 ntAPPRIS P1 TSL 1 (best) BASIC18.93■□□□□ 0.62
LDB3O75112 MIF-AS1-201ENST00000406213 1476 ntTSL 1 (best) BASIC18.93■□□□□ 0.62
LDB3O75112 NAT16-204ENST00000455377 1492 ntAPPRIS P2 TSL 1 (best) BASIC18.93■□□□□ 0.62
LDB3O75112 WDR25-201ENST00000335290 2123 ntAPPRIS P1 TSL 1 (best) BASIC18.93■□□□□ 0.62
LDB3O75112 NENF-201ENST00000366988 949 ntAPPRIS P1 TSL 1 (best) BASIC18.93■□□□□ 0.62
LDB3O75112 CT47A12-201ENST00000419982 1165 ntAPPRIS P1 TSL 1 (best) BASIC18.93■□□□□ 0.62
LDB3O75112 GATS-209ENST00000454084 1030 ntTSL 3 BASIC18.93■□□□□ 0.62
LDB3O75112 AL359182.2-201ENST00000457720 606 ntTSL 3 BASIC18.93■□□□□ 0.62
LDB3O75112 PDXDC2P-202ENST00000527016 543 ntTSL 3 BASIC18.93■□□□□ 0.62
LDB3O75112 AC006435.1-201ENST00000571775 1065 ntTSL 5 BASIC18.93■□□□□ 0.62
LDB3O75112 PLCD1-201ENST00000334661 2769 ntAPPRIS P3 TSL 1 (best) BASIC18.93■□□□□ 0.62
LDB3O75112 FGF2-202ENST00000608478 3880 ntAPPRIS P1 TSL 1 (best) BASIC18.93■□□□□ 0.62
LDB3O75112 RASSF7-204ENST00000431809 1745 ntAPPRIS ALT2 TSL 5 BASIC18.93■□□□□ 0.62
LDB3O75112 SAV1-201ENST00000324679 3063 ntAPPRIS P1 TSL 1 (best) BASIC18.93■□□□□ 0.62
LDB3O75112 EED-201ENST00000263360 2223 ntAPPRIS P1 TSL 1 (best) BASIC18.93■□□□□ 0.62
LDB3O75112 SENP5-204ENST00000445299 2491 ntTSL 2 BASIC18.93■□□□□ 0.62
LDB3O75112 FICD-201ENST00000361549 1816 ntTSL 1 (best) BASIC18.93■□□□□ 0.62
LDB3O75112 C7orf43-201ENST00000316937 2520 ntAPPRIS P1 TSL 1 (best) BASIC18.93■□□□□ 0.62
LDB3O75112 CLPB-202ENST00000340729 2071 ntTSL 2 BASIC18.93■□□□□ 0.62
LDB3O75112 GYG1-202ENST00000345003 2052 ntTSL 1 (best) BASIC18.93■□□□□ 0.62
LDB3O75112 BCL7A-201ENST00000261822 2581 ntAPPRIS P1 TSL 1 (best) BASIC18.92■□□□□ 0.62
LDB3O75112 CLN5-201ENST00000377453 2629 ntAPPRIS ALT2 TSL 1 (best) BASIC18.92■□□□□ 0.62
LDB3O75112 AC013269.1-201ENST00000409259 1653 ntAPPRIS P1 TSL 1 (best) BASIC18.92■□□□□ 0.62
LDB3O75112 TISP43-206ENST00000623376 1653 ntAPPRIS ALT2 TSL 1 (best) BASIC18.92■□□□□ 0.62
LDB3O75112 GPR157-201ENST00000377411 5265 ntAPPRIS P1 TSL 1 (best) BASIC18.92■□□□□ 0.62
LDB3O75112 EDC4-201ENST00000358933 4800 ntAPPRIS P1 TSL 1 (best) BASIC18.92■□□□□ 0.62
LDB3O75112 PDCD2-204ENST00000453163 2657 ntTSL 1 (best) BASIC18.92■□□□□ 0.62
LDB3O75112 EBF4-202ENST00000380648 2910 ntAPPRIS P2 TSL 5 BASIC18.92■□□□□ 0.62
LDB3O75112 TSSK6-201ENST00000585580 1467 ntAPPRIS P1 BASIC18.92■□□□□ 0.62
LDB3O75112 WIPF1-205ENST00000409415 1772 ntTSL 1 (best) BASIC18.92■□□□□ 0.62
LDB3O75112 LRR1-202ENST00000318317 957 ntTSL 1 (best) BASIC18.92■□□□□ 0.62
LDB3O75112 SDHC-201ENST00000342751 1127 ntTSL 1 (best) BASIC18.92■□□□□ 0.62
LDB3O75112 SPATA25-201ENST00000372519 757 ntAPPRIS P1 TSL 1 (best) BASIC18.92■□□□□ 0.62
LDB3O75112 HAGLR-207ENST00000452365 661 ntTSL 4 BASIC18.92■□□□□ 0.62
LDB3O75112 ASGR1-204ENST00000572879 797 ntTSL 5 BASIC18.92■□□□□ 0.62
LDB3O75112 RPL17-204ENST00000579248 790 ntAPPRIS P1 TSL 2 BASIC18.92■□□□□ 0.62
LDB3O75112 AL160396.2-202ENST00000636692 566 ntAPPRIS ALT2 TSL 5 BASIC18.92■□□□□ 0.62
LDB3O75112 WASH6P-203ENST00000460206 1826 ntTSL 5 BASIC18.92■□□□□ 0.62
LDB3O75112 KREMEN2-202ENST00000319500 1882 ntAPPRIS ALT2 TSL 1 (best) BASIC18.92■□□□□ 0.62
LDB3O75112 SLC16A5-201ENST00000329783 1934 ntAPPRIS P2 TSL 1 (best) BASIC18.92■□□□□ 0.62
LDB3O75112 ME2-202ENST00000382927 2492 ntTSL 1 (best) BASIC18.92■□□□□ 0.62
LDB3O75112 TPBGL-201ENST00000562197 2793 ntAPPRIS P1 BASIC18.92■□□□□ 0.62
LDB3O75112 FUT5-202ENST00000588525 1988 ntAPPRIS P1 TSL 1 (best) BASIC18.92■□□□□ 0.62
LDB3O75112 SPESP1-201ENST00000310673 1431 ntAPPRIS P1 TSL 1 (best) BASIC18.91■□□□□ 0.62
LDB3O75112 ZDHHC16-202ENST00000352634 1718 ntAPPRIS ALT1 TSL 1 (best) BASIC18.91■□□□□ 0.62
LDB3O75112 NF2-201ENST00000334961 2020 ntTSL 1 (best) BASIC18.91■□□□□ 0.62
LDB3O75112 FBXW8-201ENST00000309909 2343 ntAPPRIS P1 TSL 1 (best) BASIC18.91■□□□□ 0.62
LDB3O75112 HAUS4-202ENST00000342454 1474 ntTSL 1 (best) BASIC18.91■□□□□ 0.62
LDB3O75112 NFIX-205ENST00000585575 1485 ntAPPRIS P1 TSL 5 BASIC18.91■□□□□ 0.62
LDB3O75112 NDOR1-201ENST00000344894 1794 ntAPPRIS P1 TSL 1 (best) BASIC18.91■□□□□ 0.62
LDB3O75112 VSX1-202ENST00000376709 2192 ntAPPRIS P1 TSL 1 (best) BASIC18.91■□□□□ 0.62
LDB3O75112 FBL-201ENST00000221801 1160 ntAPPRIS P1 TSL 1 (best) BASIC18.91■□□□□ 0.62
LDB3O75112 RPS14-201ENST00000312037 711 ntAPPRIS P1 TSL 1 (best) BASIC18.91■□□□□ 0.62
LDB3O75112 SERP1-205ENST00000487153 657 ntTSL 4 BASIC18.91■□□□□ 0.62
LDB3O75112 AL049874.3-201ENST00000557618 868 ntTSL 3 BASIC18.91■□□□□ 0.62
LDB3O75112 AC068987.5-201ENST00000642069 987 ntAPPRIS P1 BASIC18.91■□□□□ 0.62
LDB3O75112 NSDHL-201ENST00000370274 1929 ntAPPRIS P2 TSL 1 (best) BASIC18.91■□□□□ 0.62
LDB3O75112 PTBP1P-201ENST00000554374 1601 ntBASIC18.91■□□□□ 0.62
LDB3O75112 CYP21A1P-201ENST00000342991 1971 ntTSL 3 BASIC18.91■□□□□ 0.62
LDB3O75112 FAM76A-205ENST00000419687 1661 ntTSL 2 BASIC18.91■□□□□ 0.62
LDB3O75112 SERPINB6-204ENST00000380529 1370 ntAPPRIS P1 TSL 2 BASIC18.91■□□□□ 0.62
LDB3O75112 CRK-204ENST00000574295 1391 ntTSL 5 BASIC18.91■□□□□ 0.62
LDB3O75112 SLC44A3-203ENST00000446120 2094 ntTSL 2 BASIC18.91■□□□□ 0.62
LDB3O75112 NCLN-205ENST00000590671 2070 ntTSL 2 BASIC18.91■□□□□ 0.62
LDB3O75112 RAB11B-201ENST00000328024 1751 ntAPPRIS P1 TSL 1 (best) BASIC18.91■□□□□ 0.62
LDB3O75112 SOX12-201ENST00000342665 4630 ntAPPRIS P1 BASIC18.91■□□□□ 0.62
LDB3O75112 PALM-202ENST00000338448 2725 ntAPPRIS P4 TSL 1 (best) BASIC18.9■□□□□ 0.62
LDB3O75112 SLC17A7-201ENST00000221485 2973 ntAPPRIS P1 TSL 1 (best) BASIC18.9■□□□□ 0.62
LDB3O75112 LIPT2-201ENST00000310109 1018 ntAPPRIS P1 TSL 2 BASIC18.9■□□□□ 0.62
LDB3O75112 TRAPPC5-201ENST00000317378 790 ntAPPRIS P1 TSL 1 (best) BASIC18.9■□□□□ 0.62
LDB3O75112 C2orf82-203ENST00000409533 561 ntAPPRIS P2 TSL 4 BASIC18.9■□□□□ 0.62
LDB3O75112 LIMD2-206ENST00000578993 602 ntTSL 3 BASIC18.9■□□□□ 0.62
LDB3O75112 AC003102.1-201ENST00000588279 569 ntTSL 4 BASIC18.9■□□□□ 0.62
LDB3O75112 OGG1-202ENST00000302008 2191 ntAPPRIS ALT2 TSL 5 BASIC18.9■□□□□ 0.62
LDB3O75112 SUN1-220ENST00000457378 1309 ntTSL 1 (best) BASIC18.9■□□□□ 0.62
LDB3O75112 PIF1-202ENST00000333425 2278 ntTSL 1 (best) BASIC18.9■□□□□ 0.62
Retrieved 100 of 98,524 protein–RNA pairs in 19.2 ms