Protein–RNA interactions for Protein: O60663

LMX1B, LIM homeobox transcription factor 1-beta, humanhuman

Predictions only

Length 402 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LMX1BO60663 TAF7-201ENST00000313368 2334 ntAPPRIS P1 BASIC17.66■□□□□ 0.42
LMX1BO60663 CCDC47-202ENST00000403162 2195 ntAPPRIS P1 TSL 2 BASIC17.66■□□□□ 0.42
LMX1BO60663 ALG1-202ENST00000544428 1419 ntTSL 2 BASIC17.66■□□□□ 0.42
LMX1BO60663 EPS8L1-209ENST00000588359 1407 ntTSL 5 BASIC17.66■□□□□ 0.42
LMX1BO60663 EML2-220ENST00000589876 2364 ntAPPRIS ALT2 TSL 1 (best) BASIC17.66■□□□□ 0.42
LMX1BO60663 MON1A-203ENST00000455683 1617 ntAPPRIS ALT2 TSL 1 (best) BASIC17.66■□□□□ 0.42
LMX1BO60663 MFSD7-204ENST00000503156 1632 ntAPPRIS ALT2 TSL 5 BASIC17.66■□□□□ 0.42
LMX1BO60663 SBK2-201ENST00000344158 1056 ntAPPRIS P1 TSL 2 BASIC17.66■□□□□ 0.42
LMX1BO60663 FNDC11-201ENST00000370097 1119 ntAPPRIS P1 TSL 2 BASIC17.66■□□□□ 0.42
LMX1BO60663 SBK2-202ENST00000413299 1085 ntAPPRIS P1 TSL 5 BASIC17.66■□□□□ 0.42
LMX1BO60663 LINC01816-201ENST00000414141 662 ntTSL 1 (best) BASIC17.66■□□□□ 0.42
LMX1BO60663 AC073210.2-201ENST00000430369 194 ntBASIC17.66■□□□□ 0.42
LMX1BO60663 AC099522.1-201ENST00000505955 881 ntTSL 3 BASIC17.66■□□□□ 0.42
LMX1BO60663 FADS3-204ENST00000525588 1254 ntTSL 5 BASIC17.66■□□□□ 0.42
LMX1BO60663 AC133552.2-202ENST00000575694 574 ntBASIC17.66■□□□□ 0.42
LMX1BO60663 MAGIX-202ENST00000595224 1238 ntAPPRIS P2 TSL 5 BASIC17.66■□□□□ 0.42
LMX1BO60663 TBCB-214ENST00000629269 413 ntTSL 5 BASIC17.66■□□□□ 0.42
LMX1BO60663 FAM129C-205ENST00000595684 2265 ntAPPRIS ALT2 TSL 1 (best) BASIC17.66■□□□□ 0.42
LMX1BO60663 OSR2-210ENST00000523368 1519 ntTSL 1 (best) BASIC17.66■□□□□ 0.42
LMX1BO60663 DALRD3-201ENST00000313778 1968 ntTSL 2 BASIC17.66■□□□□ 0.42
LMX1BO60663 SPINT2-202ENST00000454580 1367 ntTSL 1 (best) BASIC17.66■□□□□ 0.42
LMX1BO60663 SIRT3-202ENST00000524564 1395 ntTSL 2 BASIC17.66■□□□□ 0.42
LMX1BO60663 KLC2-204ENST00000394067 2898 ntAPPRIS P1 TSL 1 (best) BASIC17.65■□□□□ 0.42
LMX1BO60663 FGFR2-204ENST00000356226 3547 ntTSL 1 (best) BASIC17.65■□□□□ 0.42
LMX1BO60663 GSDMD-212ENST00000533063 1800 ntAPPRIS ALT2 TSL 1 (best) BASIC17.65■□□□□ 0.42
LMX1BO60663 C3orf18-203ENST00000426034 2486 ntAPPRIS P1 TSL 1 (best) BASIC17.65■□□□□ 0.42
LMX1BO60663 ADAMTS10-205ENST00000595838 2458 ntTSL 2 BASIC17.65■□□□□ 0.42
LMX1BO60663 CHKB-201ENST00000406938 1638 ntAPPRIS P1 TSL 1 (best) BASIC17.65■□□□□ 0.42
LMX1BO60663 BIN2-210ENST00000615107 2255 ntAPPRIS P1 TSL 1 (best) BASIC17.65■□□□□ 0.42
LMX1BO60663 RAPSN-205ENST00000529341 1408 ntTSL 1 (best) BASIC17.65■□□□□ 0.42
LMX1BO60663 SH3BGRL3-201ENST00000270792 1661 ntAPPRIS P1 TSL 1 (best) BASIC17.65■□□□□ 0.42
LMX1BO60663 ISLR2-204ENST00000453268 2812 ntAPPRIS P1 TSL 1 (best) BASIC17.65■□□□□ 0.42
LMX1BO60663 PCID2-203ENST00000375457 2372 ntTSL 1 (best) BASIC17.65■□□□□ 0.42
LMX1BO60663 CRTC1-203ENST00000594658 2384 ntTSL 1 (best) BASIC17.65■□□□□ 0.42
LMX1BO60663 DCPS-201ENST00000263579 1479 ntAPPRIS P1 TSL 1 (best) BASIC17.65■□□□□ 0.42
LMX1BO60663 HAND2-AS1-237ENST00000616485 2420 ntTSL 2 BASIC17.65■□□□□ 0.42
LMX1BO60663 MRPL39-201ENST00000307301 1199 ntAPPRIS ALT2 TSL 5 BASIC17.65■□□□□ 0.42
LMX1BO60663 GUK1-201ENST00000312726 1084 ntAPPRIS P3 TSL 1 (best) BASIC17.65■□□□□ 0.42
LMX1BO60663 MRPL39-202ENST00000352957 1110 ntAPPRIS P3 TSL 1 (best) BASIC17.65■□□□□ 0.42
LMX1BO60663 IFI6-202ENST00000361157 841 ntAPPRIS ALT2 TSL 1 (best) BASIC17.65■□□□□ 0.42
LMX1BO60663 MANBAL-202ENST00000373606 1208 ntAPPRIS P1 TSL 1 (best) BASIC17.65■□□□□ 0.42
LMX1BO60663 C2orf82-203ENST00000409533 561 ntAPPRIS P2 TSL 4 BASIC17.65■□□□□ 0.42
LMX1BO60663 AC091799.1-201ENST00000422823 811 ntBASIC17.65■□□□□ 0.42
LMX1BO60663 KRT18P20-201ENST00000548986 1279 ntBASIC17.65■□□□□ 0.42
LMX1BO60663 ZBED3-201ENST00000255198 6172 ntAPPRIS P2 TSL 1 (best) BASIC17.65■□□□□ 0.42
LMX1BO60663 NDRG2-242ENST00000555158 2216 ntAPPRIS ALT1 TSL 1 (best) BASIC17.65■□□□□ 0.42
LMX1BO60663 SLC2A8-215ENST00000610552 1763 ntTSL 3 BASIC17.65■□□□□ 0.42
LMX1BO60663 GRK2-201ENST00000308595 3466 ntAPPRIS P1 TSL 1 (best) BASIC17.65■□□□□ 0.42
LMX1BO60663 MORF4L2-AS1-201ENST00000435306 2086 ntTSL 1 (best) BASIC17.65■□□□□ 0.42
LMX1BO60663 CYB561-213ENST00000581573 2344 ntAPPRIS P1 TSL 1 (best) BASIC17.65■□□□□ 0.42
LMX1BO60663 ZNF12-201ENST00000342651 2921 ntAPPRIS ALT2 TSL 2 BASIC17.65■□□□□ 0.42
LMX1BO60663 PLBD1-201ENST00000240617 2426 ntAPPRIS P1 TSL 1 (best) BASIC17.64■□□□□ 0.42
LMX1BO60663 PUS1-203ENST00000443358 1664 ntAPPRIS ALT2 TSL 1 (best) BASIC17.64■□□□□ 0.42
LMX1BO60663 RTN1-202ENST00000342503 1703 ntAPPRIS ALT1 TSL 1 (best) BASIC17.64■□□□□ 0.41
LMX1BO60663 AVPI1-201ENST00000370626 1457 ntAPPRIS P1 TSL 1 (best) BASIC17.64■□□□□ 0.41
LMX1BO60663 PGPEP1L-202ENST00000535714 1483 ntTSL 2 BASIC17.64■□□□□ 0.41
LMX1BO60663 RUVBL2-206ENST00000595090 2009 ntAPPRIS P1 TSL 1 (best) BASIC17.64■□□□□ 0.41
LMX1BO60663 CRMP1-201ENST00000324989 3146 ntTSL 1 (best) BASIC17.64■□□□□ 0.41
LMX1BO60663 CYP2A6-201ENST00000301141 1764 ntAPPRIS P1 TSL 1 (best) BASIC17.64■□□□□ 0.41
LMX1BO60663 F2RL3-202ENST00000599210 613 ntTSL 2 BASIC17.64■□□□□ 0.41
LMX1BO60663 JADE2-211ENST00000612830 1251 ntTSL 1 (best) BASIC17.64■□□□□ 0.41
LMX1BO60663 AC010536.3-201ENST00000620306 533 ntBASIC17.64■□□□□ 0.41
LMX1BO60663 SBK1-201ENST00000341901 4992 ntAPPRIS P1 TSL 1 (best) BASIC17.64■□□□□ 0.41
LMX1BO60663 ESYT2-201ENST00000251527 5960 ntAPPRIS P2 TSL 1 (best) BASIC17.64■□□□□ 0.41
LMX1BO60663 FAM217A-201ENST00000274673 2265 ntAPPRIS P1 TSL 1 (best) BASIC17.64■□□□□ 0.41
LMX1BO60663 ISCA1-203ENST00000375991 1958 ntAPPRIS P1 TSL 1 (best) BASIC17.64■□□□□ 0.41
LMX1BO60663 RAB11FIP4-201ENST00000394744 1968 ntTSL 2 BASIC17.64■□□□□ 0.41
LMX1BO60663 FDXR-204ENST00000442102 1967 ntTSL 2 BASIC17.64■□□□□ 0.41
LMX1BO60663 FOXI1-202ENST00000449804 2011 ntTSL 1 (best) BASIC17.64■□□□□ 0.41
LMX1BO60663 UHRF1-203ENST00000615884 2651 ntAPPRIS P1 TSL 2 BASIC17.64■□□□□ 0.41
LMX1BO60663 NPNT-214ENST00000514622 2362 ntTSL 2 BASIC17.64■□□□□ 0.41
LMX1BO60663 PDE4DIP-214ENST00000479408 2746 ntTSL 5 BASIC17.63■□□□□ 0.41
LMX1BO60663 TBCB-201ENST00000221855 1473 ntAPPRIS P1 TSL 1 (best) BASIC17.63■□□□□ 0.41
LMX1BO60663 BX322557.1-202ENST00000400362 1460 ntTSL 1 (best) BASIC17.63■□□□□ 0.41
LMX1BO60663 KLC1-219ENST00000555836 2467 ntTSL 5 BASIC17.63■□□□□ 0.41
LMX1BO60663 GLT8D1-206ENST00000478968 1826 ntAPPRIS P1 TSL 1 (best) BASIC17.63■□□□□ 0.41
LMX1BO60663 HSD3B7-202ENST00000297679 2172 ntAPPRIS P1 TSL 1 (best) BASIC17.63■□□□□ 0.41
LMX1BO60663 SNAP91-211ENST00000520213 2168 ntTSL 1 (best) BASIC17.63■□□□□ 0.41
LMX1BO60663 DPH1-201ENST00000263083 2221 ntAPPRIS P2 TSL 1 (best) BASIC17.63■□□□□ 0.41
LMX1BO60663 HOXA4-202ENST00000428284 1595 ntAPPRIS P1 TSL 2 BASIC17.63■□□□□ 0.41
LMX1BO60663 CD8B-205ENST00000393761 932 ntTSL 1 (best) BASIC17.63■□□□□ 0.41
LMX1BO60663 CD8B-206ENST00000431506 692 ntAPPRIS ALT2 TSL 5 BASIC17.63■□□□□ 0.41
LMX1BO60663 SERTAD4-AS1-201ENST00000437764 726 ntTSL 1 (best) BASIC17.63■□□□□ 0.41
LMX1BO60663 CNN2P6-201ENST00000439038 900 ntBASIC17.63■□□□□ 0.41
LMX1BO60663 AC021660.2-201ENST00000502999 388 ntTSL 3 BASIC17.63■□□□□ 0.41
LMX1BO60663 AC008443.6-201ENST00000512508 500 ntTSL 4 BASIC17.63■□□□□ 0.41
LMX1BO60663 AC027451.1-201ENST00000530667 553 ntTSL 4 BASIC17.63■□□□□ 0.41
LMX1BO60663 TMEM263-203ENST00000547242 811 ntAPPRIS P1 TSL 2 BASIC17.63■□□□□ 0.41
LMX1BO60663 DENND6A-201ENST00000311128 4655 ntAPPRIS P1 TSL 1 (best) BASIC17.63■□□□□ 0.41
LMX1BO60663 PCSK6-214ENST00000611716 4409 ntAPPRIS P4 TSL 1 (best) BASIC17.63■□□□□ 0.41
LMX1BO60663 CENPN-201ENST00000299572 1398 ntTSL 1 (best) BASIC17.63■□□□□ 0.41
LMX1BO60663 PRSS33-204ENST00000576886 1755 ntTSL 1 (best) BASIC17.63■□□□□ 0.41
LMX1BO60663 RBM17P2-201ENST00000616397 1405 ntBASIC17.63■□□□□ 0.41
LMX1BO60663 OBSL1-214ENST00000603926 5520 ntTSL 5 BASIC17.63■□□□□ 0.41
LMX1BO60663 COL13A1-205ENST00000398978 3093 ntAPPRIS P4 TSL 5 BASIC17.63■□□□□ 0.41
LMX1BO60663 TAF5L-201ENST00000258281 3112 ntAPPRIS P1 TSL 5 BASIC17.63■□□□□ 0.41
LMX1BO60663 ETV7-203ENST00000373737 1488 ntAPPRIS ALT2 TSL 1 (best) BASIC17.63■□□□□ 0.41
LMX1BO60663 MBD1-216ENST00000587605 1945 ntTSL 2 BASIC17.62■□□□□ 0.41
LMX1BO60663 POLD2-201ENST00000223361 1597 ntTSL 5 BASIC17.62■□□□□ 0.41
LMX1BO60663 LINC00482-201ENST00000332012 2023 ntTSL 1 (best) BASIC17.62■□□□□ 0.41
Retrieved 100 of 98,524 protein–RNA pairs in 37 ms