Protein–RNA interactions for Protein: O00570

SOX1, Transcription factor SOX-1, humanhuman

Predicted RBP Predictions only

Length 391 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SOX1O00570 SPACA6-213ENST00000637797 1073 ntAPPRIS P1 TSL 1 (best) BASIC21.61■■□□□ 1.05
SOX1O00570 MIR210HG-201ENST00000500447 1965 ntTSL 2 BASIC21.61■■□□□ 1.05
SOX1O00570 AC245041.2-204ENST00000610809 1962 ntTSL 1 (best) BASIC21.61■■□□□ 1.05
SOX1O00570 SLC35F4-206ENST00000556826 1908 ntAPPRIS P1 TSL 5 BASIC21.61■■□□□ 1.05
SOX1O00570 LMTK3-201ENST00000270238 4972 ntAPPRIS P2 TSL 1 (best) BASIC21.6■■□□□ 1.05
SOX1O00570 MRPL38-201ENST00000309352 1888 ntAPPRIS P1 TSL 1 (best) BASIC21.6■■□□□ 1.05
SOX1O00570 GAS8-202ENST00000536122 1687 ntTSL 2 BASIC21.6■■□□□ 1.05
SOX1O00570 B3GALNT2-202ENST00000366600 2015 ntAPPRIS P1 TSL 1 (best) BASIC21.6■■□□□ 1.05
SOX1O00570 ADRM1-201ENST00000253003 1478 ntAPPRIS P1 TSL 1 (best) BASIC21.6■■□□□ 1.05
SOX1O00570 PMVK-201ENST00000368467 1280 ntAPPRIS P1 TSL 1 (best) BASIC21.6■■□□□ 1.05
SOX1O00570 FXN-203ENST00000396366 922 ntTSL 2 BASIC21.6■■□□□ 1.05
SOX1O00570 DYNLT3-203ENST00000432389 719 ntTSL 5 BASIC21.6■■□□□ 1.05
SOX1O00570 TMA7-201ENST00000438607 561 ntAPPRIS P1 TSL 1 (best) BASIC21.6■■□□□ 1.05
SOX1O00570 AP000721.2-201ENST00000537170 650 ntTSL 4 BASIC21.6■■□□□ 1.05
SOX1O00570 AC003688.1-201ENST00000577138 489 ntAPPRIS P1 TSL 3 BASIC21.6■■□□□ 1.05
SOX1O00570 AC141257.4-201ENST00000634557 245 ntBASIC21.6■■□□□ 1.05
SOX1O00570 AC136944.6-201ENST00000634818 245 ntBASIC21.6■■□□□ 1.05
SOX1O00570 CADPS-203ENST00000383710 5471 ntAPPRIS ALT2 TSL 1 (best) BASIC21.6■■□□□ 1.05
SOX1O00570 SH3GL1-201ENST00000269886 2516 ntAPPRIS P1 TSL 1 (best) BASIC21.6■■□□□ 1.05
SOX1O00570 GTF3A-201ENST00000381140 1383 ntAPPRIS ALT2 TSL 1 (best) BASIC21.6■■□□□ 1.05
SOX1O00570 KRT14-201ENST00000167586 1662 ntAPPRIS P1 TSL 1 (best) BASIC21.6■■□□□ 1.05
SOX1O00570 SH3BGRL3-201ENST00000270792 1661 ntAPPRIS P1 TSL 1 (best) BASIC21.6■■□□□ 1.05
SOX1O00570 LGALS9C-212ENST00000583322 1602 ntAPPRIS ALT1 TSL 5 BASIC21.59■■□□□ 1.05
SOX1O00570 ABHD8-201ENST00000247706 2090 ntAPPRIS P1 TSL 1 (best) BASIC21.59■■□□□ 1.05
SOX1O00570 IGF2-AS-201ENST00000381361 2063 ntTSL 2 BASIC21.59■■□□□ 1.05
SOX1O00570 TMEM160-201ENST00000253047 663 ntAPPRIS P1 TSL 1 (best) BASIC21.59■■□□□ 1.05
SOX1O00570 AC004870.1-201ENST00000315132 882 ntBASIC21.59■■□□□ 1.05
SOX1O00570 KRT17P2-202ENST00000326333 1174 ntTSL 2 BASIC21.59■■□□□ 1.05
SOX1O00570 NPB-201ENST00000333383 704 ntAPPRIS P2 TSL 1 (best) BASIC21.59■■□□□ 1.05
SOX1O00570 CLDND1-201ENST00000341181 2161 ntAPPRIS P1 TSL 1 (best) BASIC21.59■■□□□ 1.05
SOX1O00570 KRTAP5-3-201ENST00000399685 899 ntAPPRIS P1 BASIC21.59■■□□□ 1.05
SOX1O00570 ATP5G2P1-201ENST00000433580 426 ntBASIC21.59■■□□□ 1.05
SOX1O00570 HOMER2P1-201ENST00000455653 964 ntBASIC21.59■■□□□ 1.05
SOX1O00570 AC002467.1-201ENST00000457510 657 ntTSL 3 BASIC21.59■■□□□ 1.05
SOX1O00570 SKP2-204ENST00000508514 821 ntTSL 3 BASIC21.59■■□□□ 1.05
SOX1O00570 ZSCAN1-203ENST00000601162 813 ntTSL 1 (best) BASIC21.59■■□□□ 1.05
SOX1O00570 DHRS2-210ENST00000611765 1287 ntAPPRIS ALT2 TSL 2 BASIC21.59■■□□□ 1.05
SOX1O00570 PDK3-201ENST00000379162 1809 ntAPPRIS P1 TSL 1 (best) BASIC21.59■■□□□ 1.05
SOX1O00570 GNB1L-202ENST00000403325 1699 ntAPPRIS P1 TSL 1 (best) BASIC21.59■■□□□ 1.05
SOX1O00570 PCGF3-208ENST00000470161 1652 ntAPPRIS P1 TSL 1 (best) BASIC21.59■■□□□ 1.05
SOX1O00570 CSF1-203ENST00000369801 1364 ntTSL 1 (best) BASIC21.59■■□□□ 1.05
SOX1O00570 REXO4-202ENST00000371942 2360 ntAPPRIS P1 TSL 1 (best) BASIC21.59■■□□□ 1.05
SOX1O00570 PRR35-201ENST00000409413 2216 ntAPPRIS P1 TSL 1 (best) BASIC21.59■■□□□ 1.05
SOX1O00570 RNF223-201ENST00000453464 1902 ntAPPRIS P1 TSL 2 BASIC21.59■■□□□ 1.05
SOX1O00570 ZNF771-202ENST00000434417 1454 ntAPPRIS P1 TSL 2 BASIC21.58■■□□□ 1.05
SOX1O00570 DSG2-201ENST00000261590 5831 ntAPPRIS P1 TSL 1 (best) BASIC21.58■■□□□ 1.05
SOX1O00570 TNFRSF10B-202ENST00000347739 1723 ntAPPRIS ALT2 TSL 1 (best) BASIC21.58■■□□□ 1.05
SOX1O00570 C7orf49-213ENST00000617987 1727 ntTSL 5 BASIC21.58■■□□□ 1.05
SOX1O00570 NELFB-201ENST00000343053 2698 ntAPPRIS ALT2 TSL 1 (best) BASIC21.58■■□□□ 1.05
SOX1O00570 PRR20B-201ENST00000377930 1847 ntAPPRIS P1 TSL 1 (best) BASIC21.58■■□□□ 1.05
SOX1O00570 PRR20A-201ENST00000377931 1847 ntAPPRIS P1 TSL 1 (best) BASIC21.58■■□□□ 1.05
SOX1O00570 PRR20E-201ENST00000434815 1847 ntAPPRIS P1 TSL 1 (best) BASIC21.58■■□□□ 1.05
SOX1O00570 PRR20D-201ENST00000452123 1847 ntAPPRIS P1 TSL 1 (best) BASIC21.58■■□□□ 1.05
SOX1O00570 PRR20C-201ENST00000544357 1847 ntAPPRIS P1 TSL 1 (best) BASIC21.58■■□□□ 1.05
SOX1O00570 PRR20C-202ENST00000614894 1847 ntAPPRIS P1 TSL 1 (best) BASIC21.58■■□□□ 1.05
SOX1O00570 HIST1H2APS4-201ENST00000362070 348 ntBASIC21.58■■□□□ 1.05
SOX1O00570 PPP1R14BP5-201ENST00000440334 435 ntBASIC21.58■■□□□ 1.05
SOX1O00570 AC009078.2-202ENST00000463353 338 ntBASIC21.58■■□□□ 1.05
SOX1O00570 MICA-209ENST00000449934 1386 ntAPPRIS P1 TSL 1 (best) BASIC21.58■■□□□ 1.04
SOX1O00570 KLC1-203ENST00000347839 2271 ntTSL 5 BASIC21.58■■□□□ 1.04
SOX1O00570 DONSON-204ENST00000432378 1618 ntTSL 5 BASIC21.58■■□□□ 1.04
SOX1O00570 TSSK6-201ENST00000585580 1467 ntAPPRIS P1 BASIC21.58■■□□□ 1.04
SOX1O00570 SLC25A51-202ENST00000377716 1691 ntAPPRIS P1 TSL 3 BASIC21.57■■□□□ 1.04
SOX1O00570 NARF-205ENST00000412079 1760 ntTSL 5 BASIC21.57■■□□□ 1.04
SOX1O00570 ANKRD20A18P-201ENST00000359341 492 ntBASIC21.57■■□□□ 1.04
SOX1O00570 CD1E-210ENST00000368165 1003 ntAPPRIS ALT2 TSL 1 (best) BASIC21.57■■□□□ 1.04
SOX1O00570 TCEAL2-202ENST00000372780 1100 ntAPPRIS P1 TSL 1 (best) BASIC21.57■■□□□ 1.04
SOX1O00570 CAPG-203ENST00000409670 1183 ntAPPRIS P1 TSL 5 BASIC21.57■■□□□ 1.04
SOX1O00570 DAP-202ENST00000432074 1048 ntTSL 2 BASIC21.57■■□□□ 1.04
SOX1O00570 CD1E-214ENST00000452291 745 ntTSL 1 (best) BASIC21.57■■□□□ 1.04
SOX1O00570 UNC93B7-201ENST00000509439 705 ntBASIC21.57■■□□□ 1.04
SOX1O00570 RCHY1-208ENST00000512706 1011 ntTSL 3 BASIC21.57■■□□□ 1.04
SOX1O00570 VENTXP5-201ENST00000523979 775 ntBASIC21.57■■□□□ 1.04
SOX1O00570 TMEM218-206ENST00000527766 812 ntAPPRIS P1 TSL 3 BASIC21.57■■□□□ 1.04
SOX1O00570 PRR29-207ENST00000580752 458 ntTSL 3 BASIC21.57■■□□□ 1.04
SOX1O00570 AC009542.2-201ENST00000637483 1189 ntTSL 5 BASIC21.57■■□□□ 1.04
SOX1O00570 B4GALNT1-202ENST00000418555 1861 ntTSL 2 BASIC21.57■■□□□ 1.04
SOX1O00570 CCDC151-202ENST00000586836 1867 ntTSL 2 BASIC21.57■■□□□ 1.04
SOX1O00570 DNAH9-209ENST00000579828 1986 ntTSL 2 BASIC21.57■■□□□ 1.04
SOX1O00570 AC087742.1-201ENST00000575880 1738 ntBASIC21.57■■□□□ 1.04
SOX1O00570 LTK-203ENST00000453182 2412 ntTSL 2 BASIC21.57■■□□□ 1.04
SOX1O00570 SNX5-201ENST00000377759 2270 ntAPPRIS P1 TSL 1 (best) BASIC21.57■■□□□ 1.04
SOX1O00570 CENPH-206ENST00000515001 1305 ntTSL 2 BASIC21.56■■□□□ 1.04
SOX1O00570 PSMD6-201ENST00000295901 1430 ntAPPRIS P1 TSL 1 (best) BASIC21.56■■□□□ 1.04
SOX1O00570 AC068473.5-201ENST00000616428 2072 ntBASIC21.56■■□□□ 1.04
SOX1O00570 UQCRQ-201ENST00000378665 586 ntAPPRIS P1 TSL 1 (best) BASIC21.56■■□□□ 1.04
SOX1O00570 RNF216P1-205ENST00000406089 807 ntTSL 5 BASIC21.56■■□□□ 1.04
SOX1O00570 LINC01237-203ENST00000430555 843 ntTSL 4 BASIC21.56■■□□□ 1.04
SOX1O00570 TRIM73-203ENST00000437796 1169 ntAPPRIS P2 TSL 1 (best) BASIC21.56■■□□□ 1.04
SOX1O00570 KRT18P38-201ENST00000449496 1282 ntBASIC21.56■■□□□ 1.04
SOX1O00570 AC026271.3-201ENST00000571884 352 ntBASIC21.56■■□□□ 1.04
SOX1O00570 AC099811.2-203ENST00000592574 958 ntAPPRIS P1 TSL 5 BASIC21.56■■□□□ 1.04
SOX1O00570 HSD11B1L-218ENST00000581773 1687 ntAPPRIS P3 TSL 1 (best) BASIC21.56■■□□□ 1.04
SOX1O00570 TOX2-201ENST00000341197 1880 ntAPPRIS P1 TSL 2 BASIC21.56■■□□□ 1.04
SOX1O00570 C6orf136-203ENST00000376473 1402 ntAPPRIS P1 TSL 1 (best) BASIC21.55■■□□□ 1.04
SOX1O00570 GPR20-201ENST00000377741 1515 ntAPPRIS P1 TSL 3 BASIC21.55■■□□□ 1.04
SOX1O00570 POLDIP2-202ENST00000618887 1524 ntTSL 2 BASIC21.55■■□□□ 1.04
SOX1O00570 RASD1-201ENST00000225688 1746 ntAPPRIS P1 TSL 1 (best) BASIC21.55■■□□□ 1.04
SOX1O00570 MCEMP1-201ENST00000333598 1730 ntAPPRIS P2 TSL 1 (best) BASIC21.55■■□□□ 1.04
SOX1O00570 SYNE4-202ENST00000340477 1004 ntAPPRIS ALT2 TSL 1 (best) BASIC21.55■■□□□ 1.04
Retrieved 100 of 98,524 protein–RNA pairs in 32.3 ms