Protein–RNA interactions for Protein: Q9Y6I4

USP3, Ubiquitin carboxyl-terminal hydrolase 3, humanhuman

Predictions only

Length 520 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
USP3Q9Y6I4 PDCD10-202ENST00000461494 934 ntAPPRIS P1 TSL 3 BASIC21.15■□□□□ 0.98
USP3Q9Y6I4 SCARA5-203ENST00000518030 1074 ntTSL 1 (best) BASIC21.15■□□□□ 0.98
USP3Q9Y6I4 AC010646.1-201ENST00000594059 515 ntAPPRIS P1 TSL 4 BASIC21.15■□□□□ 0.98
USP3Q9Y6I4 SLC16A3-201ENST00000392339 2074 ntAPPRIS P1 TSL 5 BASIC21.15■□□□□ 0.98
USP3Q9Y6I4 SLC16A3-202ENST00000392341 2086 ntAPPRIS P1 TSL 5 BASIC21.15■□□□□ 0.98
USP3Q9Y6I4 AC092667.1-201ENST00000434301 2586 ntBASIC21.15■□□□□ 0.98
USP3Q9Y6I4 PHACTR2-203ENST00000367584 2490 ntAPPRIS ALT2 TSL 5 BASIC21.15■□□□□ 0.98
USP3Q9Y6I4 REXO1-201ENST00000170168 4591 ntAPPRIS P1 TSL 1 (best) BASIC21.15■□□□□ 0.98
USP3Q9Y6I4 SLC22A17-202ENST00000354772 2238 ntAPPRIS ALT2 TSL 1 (best) BASIC21.14■□□□□ 0.98
USP3Q9Y6I4 DBNL-220ENST00000494774 2117 ntAPPRIS P4 TSL 1 (best) BASIC21.14■□□□□ 0.98
USP3Q9Y6I4 GUCY1A3-210ENST00000513574 2656 ntAPPRIS P1 TSL 1 (best) BASIC21.14■□□□□ 0.98
USP3Q9Y6I4 DBNDD2-206ENST00000372720 1481 ntTSL 1 (best) BASIC21.14■□□□□ 0.98
USP3Q9Y6I4 TMEM44-204ENST00000392432 2490 ntTSL 1 (best) BASIC21.14■□□□□ 0.98
USP3Q9Y6I4 LINC01521-201ENST00000504184 1943 ntBASIC21.14■□□□□ 0.98
USP3Q9Y6I4 GABRA2-214ENST00000515082 2366 ntTSL 1 (best) BASIC21.14■□□□□ 0.97
USP3Q9Y6I4 DISC1-213ENST00000537876 2349 ntAPPRIS ALT2 TSL 2 BASIC21.14■□□□□ 0.97
USP3Q9Y6I4 TRA2B-203ENST00000382191 976 ntTSL 2 BASIC21.14■□□□□ 0.97
USP3Q9Y6I4 ZDHHC20-204ENST00000415724 1296 ntAPPRIS ALT2 TSL 5 BASIC21.14■□□□□ 0.97
USP3Q9Y6I4 GCC2-AS1-202ENST00000440975 574 ntTSL 4 BASIC21.14■□□□□ 0.97
USP3Q9Y6I4 METTL21A-207ENST00000442521 1003 ntAPPRIS P1 TSL 2 BASIC21.14■□□□□ 0.97
USP3Q9Y6I4 FAM201B-201ENST00000458407 597 ntBASIC21.14■□□□□ 0.97
USP3Q9Y6I4 NAT14-204ENST00000591590 1011 ntTSL 1 (best) BASIC21.14■□□□□ 0.97
USP3Q9Y6I4 KLF2-202ENST00000592003 564 ntTSL 3 BASIC21.14■□□□□ 0.97
USP3Q9Y6I4 AC092720.2-201ENST00000602388 1665 ntBASIC21.14■□□□□ 0.97
USP3Q9Y6I4 CEBPA-201ENST00000498907 2631 ntAPPRIS P1 BASIC21.14■□□□□ 0.97
USP3Q9Y6I4 SDHAF3-202ENST00000432641 2060 ntAPPRIS P1 TSL 1 (best) BASIC21.14■□□□□ 0.97
USP3Q9Y6I4 C17orf67-201ENST00000397861 2013 ntAPPRIS P1 TSL 1 (best) BASIC21.14■□□□□ 0.97
USP3Q9Y6I4 LONP1-203ENST00000585374 2882 ntTSL 5 BASIC21.14■□□□□ 0.97
USP3Q9Y6I4 TNFRSF25-203ENST00000351959 1441 ntAPPRIS ALT2 TSL 1 (best) BASIC21.13■□□□□ 0.97
USP3Q9Y6I4 DBNL-207ENST00000440166 1415 ntTSL 2 BASIC21.13■□□□□ 0.97
USP3Q9Y6I4 WNT10B-202ENST00000403957 1817 ntTSL 5 BASIC21.13■□□□□ 0.97
USP3Q9Y6I4 MTMR9LP-204ENST00000441044 2624 ntTSL 1 (best) BASIC21.13■□□□□ 0.97
USP3Q9Y6I4 H19-201ENST00000411754 1788 ntTSL 5 BASIC21.13■□□□□ 0.97
USP3Q9Y6I4 SLC38A8-201ENST00000299709 1308 ntAPPRIS P1 TSL 5 BASIC21.13■□□□□ 0.97
USP3Q9Y6I4 AK4-208ENST00000546702 1335 ntTSL 1 (best) BASIC21.13■□□□□ 0.97
USP3Q9Y6I4 MAMSTR-203ENST00000594582 1693 ntTSL 1 (best) BASIC21.13■□□□□ 0.97
USP3Q9Y6I4 CHRNA3-202ENST00000348639 2030 ntTSL 1 (best) BASIC21.13■□□□□ 0.97
USP3Q9Y6I4 TMEM243-201ENST00000257637 1063 ntAPPRIS P1 TSL 1 (best) BASIC21.13■□□□□ 0.97
USP3Q9Y6I4 FITM1-201ENST00000267426 1194 ntAPPRIS P1 TSL 1 (best) BASIC21.13■□□□□ 0.97
USP3Q9Y6I4 LCE2A-201ENST00000368779 592 ntAPPRIS P1 TSL 1 (best) BASIC21.13■□□□□ 0.97
USP3Q9Y6I4 CD99-203ENST00000381184 918 ntAPPRIS ALT2 TSL 5 BASIC21.13■□□□□ 0.97
USP3Q9Y6I4 ZNF688-205ENST00000563707 244 ntTSL 3 BASIC21.13■□□□□ 0.97
USP3Q9Y6I4 ZNF264-205ENST00000599653 705 ntTSL 2 BASIC21.13■□□□□ 0.97
USP3Q9Y6I4 SUPT4H1-202ENST00000577396 1643 ntTSL 2 BASIC21.13■□□□□ 0.97
USP3Q9Y6I4 KREMEN2-201ENST00000303746 2326 ntAPPRIS P4 TSL 1 (best) BASIC21.13■□□□□ 0.97
USP3Q9Y6I4 TGFBRAP1-202ENST00000393359 5979 ntAPPRIS P1 TSL 1 (best) BASIC21.13■□□□□ 0.97
USP3Q9Y6I4 TMEM163-201ENST00000281924 1892 ntAPPRIS P1 TSL 1 (best) BASIC21.13■□□□□ 0.97
USP3Q9Y6I4 ADM-206ENST00000528655 1889 ntAPPRIS P1 TSL 1 (best) BASIC21.13■□□□□ 0.97
USP3Q9Y6I4 PRRT4-207ENST00000535159 2897 ntAPPRIS P1 TSL 5 BASIC21.13■□□□□ 0.97
USP3Q9Y6I4 CIRBP-225ENST00000589710 1835 ntTSL 2 BASIC21.13■□□□□ 0.97
USP3Q9Y6I4 WDR25-201ENST00000335290 2123 ntAPPRIS P1 TSL 1 (best) BASIC21.13■□□□□ 0.97
USP3Q9Y6I4 CACNA2D1-203ENST00000423588 1429 ntTSL 1 (best) BASIC21.12■□□□□ 0.97
USP3Q9Y6I4 TMEM250-205ENST00000561457 2804 ntAPPRIS P1 TSL 2 BASIC21.12■□□□□ 0.97
USP3Q9Y6I4 UNKL-205ENST00000397464 2180 ntTSL 2 BASIC21.12■□□□□ 0.97
USP3Q9Y6I4 C11orf86-201ENST00000308963 1187 ntAPPRIS P1 TSL 2 BASIC21.12■□□□□ 0.97
USP3Q9Y6I4 MAL-201ENST00000309988 1112 ntAPPRIS P1 TSL 1 (best) BASIC21.12■□□□□ 0.97
USP3Q9Y6I4 SERF1A-201ENST00000317633 963 ntAPPRIS P1 TSL 1 (best) BASIC21.12■□□□□ 0.97
USP3Q9Y6I4 AC073316.3-201ENST00000437354 982 ntTSL 3 BASIC21.12■□□□□ 0.97
USP3Q9Y6I4 ZNF346-203ENST00000503425 1191 ntTSL 2 BASIC21.12■□□□□ 0.97
USP3Q9Y6I4 CDH18-AS1-201ENST00000513573 424 ntTSL 2 BASIC21.12■□□□□ 0.97
USP3Q9Y6I4 SOX15-202ENST00000538513 1050 ntAPPRIS P1 TSL 1 (best) BASIC21.12■□□□□ 0.97
USP3Q9Y6I4 SOX15-203ENST00000570788 1093 ntBASIC21.12■□□□□ 0.97
USP3Q9Y6I4 PTGIR-202ENST00000594275 699 ntTSL 3 BASIC21.12■□□□□ 0.97
USP3Q9Y6I4 PTGIR-206ENST00000598865 724 ntTSL 3 BASIC21.12■□□□□ 0.97
USP3Q9Y6I4 IKZF1-209ENST00000438033 1748 ntTSL 2 BASIC21.12■□□□□ 0.97
USP3Q9Y6I4 AC020907.5-201ENST00000624372 1936 ntBASIC21.12■□□□□ 0.97
USP3Q9Y6I4 CYP1B1-207ENST00000614273 2174 ntAPPRIS P1 TSL 5 BASIC21.12■□□□□ 0.97
USP3Q9Y6I4 C11orf95-202ENST00000433688 5716 ntAPPRIS P1 TSL 5 BASIC21.11■□□□□ 0.97
USP3Q9Y6I4 GPS2-201ENST00000380728 1379 ntAPPRIS P1 TSL 1 (best) BASIC21.11■□□□□ 0.97
USP3Q9Y6I4 RHNO1-204ENST00000489288 1870 ntAPPRIS P3 TSL 1 (best) BASIC21.11■□□□□ 0.97
USP3Q9Y6I4 ST3GAL4-204ENST00000444328 1812 ntAPPRIS ALT1 TSL 5 BASIC21.11■□□□□ 0.97
USP3Q9Y6I4 SLC1A7-201ENST00000371491 1306 ntTSL 1 (best) BASIC21.11■□□□□ 0.97
USP3Q9Y6I4 FAM129C-203ENST00000449408 2004 ntAPPRIS ALT2 TSL 2 BASIC21.11■□□□□ 0.97
USP3Q9Y6I4 WDR74-202ENST00000311713 1153 ntTSL 1 (best) BASIC21.11■□□□□ 0.97
USP3Q9Y6I4 GGTLC1-203ENST00000335694 1046 ntAPPRIS P1 TSL 1 (best) BASIC21.11■□□□□ 0.97
USP3Q9Y6I4 MRPS26-201ENST00000380325 1127 ntAPPRIS P1 TSL 1 (best) BASIC21.11■□□□□ 0.97
USP3Q9Y6I4 CAMLG-202ENST00000514518 895 ntTSL 1 (best) BASIC21.11■□□□□ 0.97
USP3Q9Y6I4 SPI1-204ENST00000533968 1290 ntTSL 1 (best) BASIC21.11■□□□□ 0.97
USP3Q9Y6I4 SEC23A-AS1-201ENST00000557350 500 ntTSL 3 BASIC21.11■□□□□ 0.97
USP3Q9Y6I4 ITM2C-210ENST00000620962 501 ntBASIC21.11■□□□□ 0.97
USP3Q9Y6I4 FAM129C-212ENST00000601861 2180 ntAPPRIS ALT2 TSL 2 BASIC21.11■□□□□ 0.97
USP3Q9Y6I4 HAUS4-202ENST00000342454 1474 ntTSL 1 (best) BASIC21.11■□□□□ 0.97
USP3Q9Y6I4 IRF3-221ENST00000598808 1468 ntTSL 5 BASIC21.11■□□□□ 0.97
USP3Q9Y6I4 GTF2IRD2B-208ENST00000619142 1932 ntTSL 1 (best) BASIC21.11■□□□□ 0.97
USP3Q9Y6I4 NUDT11-201ENST00000375992 2385 ntAPPRIS P1 TSL 1 (best) BASIC21.11■□□□□ 0.97
USP3Q9Y6I4 JADE2-204ENST00000402835 2797 ntTSL 5 BASIC21.11■□□□□ 0.97
USP3Q9Y6I4 FSTL3-201ENST00000166139 2542 ntAPPRIS P1 TSL 1 (best) BASIC21.11■□□□□ 0.97
USP3Q9Y6I4 FAM170B-201ENST00000311787 1401 ntAPPRIS P1 TSL 1 (best) BASIC21.11■□□□□ 0.97
USP3Q9Y6I4 MRGPRE-201ENST00000389832 1409 ntAPPRIS P1 TSL 2 BASIC21.11■□□□□ 0.97
USP3Q9Y6I4 PHF20L1-214ENST00000485595 1810 ntTSL 2 BASIC21.11■□□□□ 0.97
USP3Q9Y6I4 FOXI1-202ENST00000449804 2011 ntTSL 1 (best) BASIC21.11■□□□□ 0.97
USP3Q9Y6I4 TPCN2-205ENST00000542467 2000 ntTSL 2 BASIC21.11■□□□□ 0.97
USP3Q9Y6I4 SEPT7-206ENST00000435235 1584 ntTSL 2 BASIC21.1■□□□□ 0.97
USP3Q9Y6I4 PRKG2-207ENST00000628926 2623 ntTSL 2 BASIC21.1■□□□□ 0.97
USP3Q9Y6I4 NDOR1-201ENST00000344894 1794 ntAPPRIS P1 TSL 1 (best) BASIC21.1■□□□□ 0.97
USP3Q9Y6I4 MAP2K5-203ENST00000354498 1783 ntTSL 2 BASIC21.1■□□□□ 0.97
USP3Q9Y6I4 DPF1-217ENST00000614244 2356 ntTSL 1 (best) BASIC21.1■□□□□ 0.97
USP3Q9Y6I4 ARHGDIA-201ENST00000269321 1906 ntAPPRIS P1 TSL 1 (best) BASIC21.1■□□□□ 0.97
USP3Q9Y6I4 SMIM3-201ENST00000526627 2332 ntAPPRIS P1 TSL 1 (best) BASIC21.1■□□□□ 0.97
USP3Q9Y6I4 ANKLE1-204ENST00000594072 2294 ntTSL 5 BASIC21.1■□□□□ 0.97
Retrieved 100 of 98,524 protein–RNA pairs in 20.6 ms