Protein–RNA interactions for Protein: Q9Y4Z0

LSM4, U6 snRNA-associated Sm-like protein LSm4, humanhuman

Known RBP Predictions only

Length 139 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LSM4Q9Y4Z0 PTPA-204ENST00000355007 2515 ntTSL 5 BASIC16.1■□□□□ 0.17
LSM4Q9Y4Z0 NHLRC1-201ENST00000340650 2248 ntAPPRIS P1 BASIC16.1■□□□□ 0.17
LSM4Q9Y4Z0 PHOSPHO1-206ENST00000514112 1587 ntTSL 1 (best) BASIC16.1■□□□□ 0.17
LSM4Q9Y4Z0 DMPK-203ENST00000354227 1982 ntTSL 2 BASIC16.1■□□□□ 0.17
LSM4Q9Y4Z0 STAU2-229ENST00000524300 3065 ntAPPRIS P4 TSL 2 BASIC16.1■□□□□ 0.17
LSM4Q9Y4Z0 CITED1-201ENST00000246139 1231 ntAPPRIS P3 TSL 1 (best) BASIC16.1■□□□□ 0.17
LSM4Q9Y4Z0 DCTN3-202ENST00000341694 899 ntTSL 1 (best) BASIC16.1■□□□□ 0.17
LSM4Q9Y4Z0 DCTN3-205ENST00000378916 773 ntTSL 2 BASIC16.1■□□□□ 0.17
LSM4Q9Y4Z0 TRIQK-221ENST00000524107 737 ntAPPRIS P1 TSL 3 BASIC16.1■□□□□ 0.17
LSM4Q9Y4Z0 IGFALS-203ENST00000568221 730 ntTSL 4 BASIC16.1■□□□□ 0.17
LSM4Q9Y4Z0 MFSD11-216ENST00000590393 1141 ntBASIC16.1■□□□□ 0.17
LSM4Q9Y4Z0 CD24-202ENST00000610952 802 ntAPPRIS P3 TSL 2 BASIC16.1■□□□□ 0.17
LSM4Q9Y4Z0 TMEM191A-211ENST00000637163 1067 ntBASIC16.1■□□□□ 0.17
LSM4Q9Y4Z0 SBK1-201ENST00000341901 4992 ntAPPRIS P1 TSL 1 (best) BASIC16.1■□□□□ 0.17
LSM4Q9Y4Z0 ATG4B-204ENST00000402096 1685 ntTSL 2 BASIC16.1■□□□□ 0.17
LSM4Q9Y4Z0 ABHD5-205ENST00000458276 1690 ntAPPRIS P1 TSL 1 (best) BASIC16.1■□□□□ 0.17
LSM4Q9Y4Z0 LINC01558-202ENST00000495520 1652 ntTSL 2 BASIC16.1■□□□□ 0.17
LSM4Q9Y4Z0 C19orf25-202ENST00000436106 2403 ntAPPRIS P1 TSL 1 (best) BASIC16.1■□□□□ 0.17
LSM4Q9Y4Z0 NCLN-205ENST00000590671 2070 ntTSL 2 BASIC16.1■□□□□ 0.17
LSM4Q9Y4Z0 CERKL-203ENST00000374969 1330 ntTSL 1 (best) BASIC16.1■□□□□ 0.17
LSM4Q9Y4Z0 CD58-203ENST00000457047 1328 ntAPPRIS ALT2 TSL 1 (best) BASIC16.1■□□□□ 0.17
LSM4Q9Y4Z0 ENTPD8-201ENST00000344119 2111 ntTSL 1 (best) BASIC16.1■□□□□ 0.17
LSM4Q9Y4Z0 CNIH2-201ENST00000311445 1356 ntAPPRIS P2 TSL 1 (best) BASIC16.1■□□□□ 0.17
LSM4Q9Y4Z0 RNF224-201ENST00000445101 1798 ntAPPRIS P1 TSL 3 BASIC16.1■□□□□ 0.17
LSM4Q9Y4Z0 PI4KB-213ENST00000529142 2603 ntTSL 2 BASIC16.1■□□□□ 0.17
LSM4Q9Y4Z0 SPNS1-201ENST00000311008 2208 ntAPPRIS P1 TSL 1 (best) BASIC16.1■□□□□ 0.17
LSM4Q9Y4Z0 SERPINF2-201ENST00000324015 2284 ntAPPRIS P1 TSL 5 BASIC16.1■□□□□ 0.17
LSM4Q9Y4Z0 PPP5C-202ENST00000391919 1929 ntTSL 5 BASIC16.09■□□□□ 0.17
LSM4Q9Y4Z0 INPP4A-201ENST00000074304 6752 ntTSL 5 BASIC16.09■□□□□ 0.17
LSM4Q9Y4Z0 TREX2-202ENST00000334497 1982 ntTSL 1 (best) BASIC16.09■□□□□ 0.17
LSM4Q9Y4Z0 NBL1-209ENST00000548815 1953 ntAPPRIS P3 TSL 3 BASIC16.09■□□□□ 0.17
LSM4Q9Y4Z0 ZNF511-201ENST00000359035 2004 ntTSL 2 BASIC16.09■□□□□ 0.17
LSM4Q9Y4Z0 PACRGL-208ENST00000503585 1582 ntAPPRIS P1 TSL 2 BASIC16.09■□□□□ 0.17
LSM4Q9Y4Z0 GPR162-203ENST00000428545 1610 ntTSL 1 (best) BASIC16.09■□□□□ 0.17
LSM4Q9Y4Z0 OGG1-205ENST00000344629 1744 ntAPPRIS ALT2 TSL 1 (best) BASIC16.09■□□□□ 0.17
LSM4Q9Y4Z0 RASSF7-204ENST00000431809 1745 ntAPPRIS ALT2 TSL 5 BASIC16.09■□□□□ 0.17
LSM4Q9Y4Z0 SSTR3-202ENST00000617123 1781 ntAPPRIS P1 TSL 1 (best) BASIC16.09■□□□□ 0.17
LSM4Q9Y4Z0 HIST1H2AM-201ENST00000359611 393 ntAPPRIS P1 BASIC16.09■□□□□ 0.17
LSM4Q9Y4Z0 TRNT1-207ENST00000420393 854 ntTSL 3 BASIC16.09■□□□□ 0.17
LSM4Q9Y4Z0 SNAP23-214ENST00000567094 834 ntTSL 3 BASIC16.09■□□□□ 0.17
LSM4Q9Y4Z0 AC142086.2-201ENST00000569753 217 ntBASIC16.09■□□□□ 0.17
LSM4Q9Y4Z0 UCHL5-204ENST00000367451 1346 ntTSL 5 BASIC16.09■□□□□ 0.17
LSM4Q9Y4Z0 TADA2B-204ENST00000512388 1343 ntTSL 5 BASIC16.09■□□□□ 0.17
LSM4Q9Y4Z0 NGLY1-202ENST00000280700 2473 ntAPPRIS P1 TSL 1 (best) BASIC16.09■□□□□ 0.17
LSM4Q9Y4Z0 C2orf54-201ENST00000307486 2017 ntAPPRIS ALT2 TSL 1 (best) BASIC16.09■□□□□ 0.17
LSM4Q9Y4Z0 RNF135-205ENST00000535306 2098 ntTSL 1 (best) BASIC16.09■□□□□ 0.17
LSM4Q9Y4Z0 IGFALS-201ENST00000215539 2116 ntAPPRIS P1 TSL 1 (best) BASIC16.09■□□□□ 0.17
LSM4Q9Y4Z0 HSF4-215ENST00000521374 1515 ntAPPRIS P1 TSL 1 (best) BASIC16.09■□□□□ 0.17
LSM4Q9Y4Z0 GSTM3-202ENST00000361066 1565 ntAPPRIS P1 TSL 1 (best) BASIC16.09■□□□□ 0.17
LSM4Q9Y4Z0 LAG3-202ENST00000441671 1576 ntAPPRIS ALT2 TSL 1 (best) BASIC16.09■□□□□ 0.17
LSM4Q9Y4Z0 ASCL4-201ENST00000342331 2260 ntAPPRIS P1 BASIC16.08■□□□□ 0.17
LSM4Q9Y4Z0 PAQR4-203ENST00000572687 2251 ntTSL 2 BASIC16.08■□□□□ 0.17
LSM4Q9Y4Z0 UTP4-201ENST00000314423 2322 ntAPPRIS P1 TSL 1 (best) BASIC16.08■□□□□ 0.17
LSM4Q9Y4Z0 STARD10-213ENST00000538536 1678 ntTSL 1 (best) BASIC16.08■□□□□ 0.17
LSM4Q9Y4Z0 CHP2-201ENST00000300113 2382 ntAPPRIS P1 TSL 1 (best) BASIC16.08■□□□□ 0.17
LSM4Q9Y4Z0 ASPG-201ENST00000546892 1791 ntAPPRIS ALT2 TSL 1 (best) BASIC16.08■□□□□ 0.17
LSM4Q9Y4Z0 SOX12-201ENST00000342665 4630 ntAPPRIS P1 BASIC16.08■□□□□ 0.17
LSM4Q9Y4Z0 TMPRSS5-202ENST00000536856 1811 ntTSL 1 (best) BASIC16.08■□□□□ 0.17
LSM4Q9Y4Z0 THOP1-202ENST00000395212 1877 ntTSL 2 BASIC16.08■□□□□ 0.17
LSM4Q9Y4Z0 MGAT3-201ENST00000341184 5062 ntAPPRIS P1 TSL 1 (best) BASIC16.08■□□□□ 0.16
LSM4Q9Y4Z0 SLC6A11-202ENST00000454147 2794 ntTSL 1 (best) BASIC16.08■□□□□ 0.16
LSM4Q9Y4Z0 PKMYT1-204ENST00000440027 2061 ntTSL 2 BASIC16.08■□□□□ 0.16
LSM4Q9Y4Z0 MOB2-201ENST00000329957 1207 ntAPPRIS P1 TSL 2 BASIC16.08■□□□□ 0.16
LSM4Q9Y4Z0 JDP2-202ENST00000419727 972 ntAPPRIS P1 TSL 2 BASIC16.08■□□□□ 0.16
LSM4Q9Y4Z0 ZNF561-AS1-205ENST00000588765 579 ntTSL 4 BASIC16.08■□□□□ 0.16
LSM4Q9Y4Z0 GAMT-205ENST00000640762 751 ntTSL 5 BASIC16.08■□□□□ 0.16
LSM4Q9Y4Z0 FNDC5-207ENST00000640867 639 ntAPPRIS P2 TSL 2 BASIC16.08■□□□□ 0.16
LSM4Q9Y4Z0 AC125437.2-201ENST00000625180 2167 ntBASIC16.08■□□□□ 0.16
LSM4Q9Y4Z0 FAM83H-201ENST00000388913 5654 ntAPPRIS P1 TSL 5 BASIC16.08■□□□□ 0.16
LSM4Q9Y4Z0 RAB1A-202ENST00000409751 1333 ntTSL 5 BASIC16.08■□□□□ 0.16
LSM4Q9Y4Z0 SPAG16-204ENST00000413312 2258 ntTSL 5 BASIC16.08■□□□□ 0.16
LSM4Q9Y4Z0 CACNA1A-218ENST00000635895 8657 ntAPPRIS ALT2 TSL 5 BASIC16.08■□□□□ 0.16
LSM4Q9Y4Z0 CACNA1A-257ENST00000638009 8665 ntAPPRIS ALT2 TSL 1 (best) BASIC16.08■□□□□ 0.16
LSM4Q9Y4Z0 NETO1-207ENST00000583169 2357 ntAPPRIS P1 TSL 1 (best) BASIC16.08■□□□□ 0.16
LSM4Q9Y4Z0 TCIRG1-213ENST00000532635 2457 ntTSL 1 (best) BASIC16.08■□□□□ 0.16
LSM4Q9Y4Z0 H2AFX-202ENST00000530167 1614 ntAPPRIS P1 BASIC16.08■□□□□ 0.16
LSM4Q9Y4Z0 OTUB1-209ENST00000538426 1729 ntAPPRIS P2 TSL 1 (best) BASIC16.08■□□□□ 0.16
LSM4Q9Y4Z0 SLC2A8-215ENST00000610552 1763 ntTSL 3 BASIC16.08■□□□□ 0.16
LSM4Q9Y4Z0 BX323043.1-201ENST00000641006 1765 ntBASIC16.08■□□□□ 0.16
LSM4Q9Y4Z0 HDDC3-202ENST00000394272 1880 ntAPPRIS P1 TSL 2 BASIC16.08■□□□□ 0.16
LSM4Q9Y4Z0 MRM1-204ENST00000614766 1857 ntAPPRIS P1 TSL 1 (best) BASIC16.08■□□□□ 0.16
LSM4Q9Y4Z0 ADGRG2-210ENST00000379878 4803 ntTSL 1 (best) BASIC16.07■□□□□ 0.16
LSM4Q9Y4Z0 GNS-208ENST00000543646 2164 ntAPPRIS ALT2 TSL 2 BASIC16.07■□□□□ 0.16
LSM4Q9Y4Z0 UHRF1-203ENST00000615884 2651 ntAPPRIS P1 TSL 2 BASIC16.07■□□□□ 0.16
LSM4Q9Y4Z0 TOR1B-201ENST00000259339 2769 ntAPPRIS P1 TSL 1 (best) BASIC16.07■□□□□ 0.16
LSM4Q9Y4Z0 AC087289.5-201ENST00000586076 3175 ntBASIC16.07■□□□□ 0.16
LSM4Q9Y4Z0 KHDC3L-201ENST00000370367 1018 ntAPPRIS P1 TSL 1 (best) BASIC16.07■□□□□ 0.16
LSM4Q9Y4Z0 MAD2L2-204ENST00000376667 872 ntAPPRIS P1 TSL 2 BASIC16.07■□□□□ 0.16
LSM4Q9Y4Z0 C19orf73-201ENST00000408991 744 ntAPPRIS P1 BASIC16.07■□□□□ 0.16
LSM4Q9Y4Z0 AC027307.1-201ENST00000590252 457 ntTSL 5 BASIC16.07■□□□□ 0.16
LSM4Q9Y4Z0 PARD6A-203ENST00000602551 1171 ntTSL 5 BASIC16.07■□□□□ 0.16
LSM4Q9Y4Z0 AC104187.1-201ENST00000607510 612 ntBASIC16.07■□□□□ 0.16
LSM4Q9Y4Z0 AL121832.2-201ENST00000610979 668 ntBASIC16.07■□□□□ 0.16
LSM4Q9Y4Z0 FP565260.3-201ENST00000612610 1162 ntAPPRIS P5 TSL 1 (best) BASIC16.07■□□□□ 0.16
LSM4Q9Y4Z0 AC231657.2-201ENST00000624556 255 ntBASIC16.07■□□□□ 0.16
LSM4Q9Y4Z0 APOC3-205ENST00000630701 541 ntTSL 1 (best) BASIC16.07■□□□□ 0.16
LSM4Q9Y4Z0 UCK2-201ENST00000367879 1375 ntAPPRIS P1 TSL 1 (best) BASIC16.07■□□□□ 0.16
LSM4Q9Y4Z0 TTYH3-201ENST00000258796 4840 ntAPPRIS P1 TSL 1 (best) BASIC16.07■□□□□ 0.16
LSM4Q9Y4Z0 FGFRL1-203ENST00000504138 1663 ntAPPRIS P1 TSL 1 (best) BASIC16.07■□□□□ 0.16
LSM4Q9Y4Z0 TRIP6-201ENST00000200457 1942 ntAPPRIS P1 TSL 1 (best) BASIC16.07■□□□□ 0.16
Retrieved 100 of 98,524 protein–RNA pairs in 30 ms