Protein–RNA interactions for Protein: Q9Y261

FOXA2, Hepatocyte nuclear factor 3-beta, humanhuman

Predicted RBP Predictions only

Length 457 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
FOXA2Q9Y261 C5AR2-202ENST00000600626 1287 ntAPPRIS P1 TSL 1 (best) BASIC16.3■□□□□ 0.2
FOXA2Q9Y261 AC243773.2-201ENST00000616341 490 ntTSL 2 BASIC16.3■□□□□ 0.2
FOXA2Q9Y261 LMAN1L-201ENST00000309664 1873 ntAPPRIS P1 TSL 1 (best) BASIC16.3■□□□□ 0.2
FOXA2Q9Y261 MARK1-203ENST00000402574 5273 ntTSL 1 (best) BASIC16.3■□□□□ 0.2
FOXA2Q9Y261 FBXW8-201ENST00000309909 2343 ntAPPRIS P1 TSL 1 (best) BASIC16.3■□□□□ 0.2
FOXA2Q9Y261 MKRN1-208ENST00000474576 1661 ntTSL 5 BASIC16.3■□□□□ 0.2
FOXA2Q9Y261 CAV2-201ENST00000222693 3301 ntAPPRIS P1 TSL 1 (best) BASIC16.3■□□□□ 0.2
FOXA2Q9Y261 POLD2-202ENST00000406581 2158 ntAPPRIS P1 TSL 2 BASIC16.3■□□□□ 0.2
FOXA2Q9Y261 PHLDA3-202ENST00000367311 2640 ntAPPRIS P1 TSL 1 (best) BASIC16.3■□□□□ 0.2
FOXA2Q9Y261 HOXA4-202ENST00000428284 1595 ntAPPRIS P1 TSL 2 BASIC16.3■□□□□ 0.2
FOXA2Q9Y261 UBAP1-204ENST00000625521 2029 ntTSL 2 BASIC16.29■□□□□ 0.2
FOXA2Q9Y261 BEAN1-202ENST00000536005 1988 ntTSL 1 (best) BASIC16.29■□□□□ 0.2
FOXA2Q9Y261 NSDHL-201ENST00000370274 1929 ntAPPRIS P2 TSL 1 (best) BASIC16.29■□□□□ 0.2
FOXA2Q9Y261 CCT5-205ENST00000506600 1939 ntTSL 2 BASIC16.29■□□□□ 0.2
FOXA2Q9Y261 HDAC4-201ENST00000345617 8976 ntAPPRIS P1 TSL 1 (best) BASIC16.29■□□□□ 0.2
FOXA2Q9Y261 HDAC4-215ENST00000543185 8990 ntTSL 5 BASIC16.29■□□□□ 0.2
FOXA2Q9Y261 EHBP1-209ENST00000431489 5076 ntAPPRIS ALT2 TSL 1 (best) BASIC16.29■□□□□ 0.2
FOXA2Q9Y261 NAE1-201ENST00000290810 1837 ntAPPRIS P1 TSL 1 (best) BASIC16.29■□□□□ 0.2
FOXA2Q9Y261 AC007952.6-201ENST00000573168 2673 ntBASIC16.29■□□□□ 0.2
FOXA2Q9Y261 AC003957.1-201ENST00000625108 2673 ntBASIC16.29■□□□□ 0.2
FOXA2Q9Y261 CYP2A6-201ENST00000301141 1764 ntAPPRIS P1 TSL 1 (best) BASIC16.29■□□□□ 0.2
FOXA2Q9Y261 CCDC47-202ENST00000403162 2195 ntAPPRIS P1 TSL 2 BASIC16.29■□□□□ 0.2
FOXA2Q9Y261 IL11RA-201ENST00000318041 1728 ntAPPRIS P1 TSL 1 (best) BASIC16.29■□□□□ 0.2
FOXA2Q9Y261 KANSL1-AS1-201ENST00000398275 517 ntTSL 1 (best) BASIC16.29■□□□□ 0.2
FOXA2Q9Y261 ARL6IP4-205ENST00000412505 818 ntTSL 5 BASIC16.29■□□□□ 0.2
FOXA2Q9Y261 AC105001.1-201ENST00000506149 821 ntTSL 1 (best) BASIC16.29■□□□□ 0.2
FOXA2Q9Y261 H1FX-AS1-204ENST00000511998 917 ntTSL 5 BASIC16.29■□□□□ 0.2
FOXA2Q9Y261 SLC25A29-212ENST00000555927 960 ntTSL 2 BASIC16.29■□□□□ 0.2
FOXA2Q9Y261 AC080038.1-201ENST00000611274 1154 ntBASIC16.29■□□□□ 0.2
FOXA2Q9Y261 CDCA4-201ENST00000336219 2513 ntAPPRIS P1 TSL 1 (best) BASIC16.29■□□□□ 0.2
FOXA2Q9Y261 VRK2-207ENST00000440705 1676 ntAPPRIS ALT2 TSL 1 (best) BASIC16.29■□□□□ 0.2
FOXA2Q9Y261 DMWD-202ENST00000377735 3292 ntAPPRIS ALT2 TSL 5 BASIC16.29■□□□□ 0.2
FOXA2Q9Y261 CXCR3-202ENST00000373693 1624 ntAPPRIS P1 TSL 1 (best) BASIC16.29■□□□□ 0.2
FOXA2Q9Y261 SHANK1-203ENST00000391813 4785 ntTSL 1 (best) BASIC16.29■□□□□ 0.2
FOXA2Q9Y261 STARD10-201ENST00000334805 1963 ntAPPRIS P1 TSL 1 (best) BASIC16.29■□□□□ 0.2
FOXA2Q9Y261 PCDHB12-203ENST00000624949 1963 ntTSL 2 BASIC16.29■□□□□ 0.2
FOXA2Q9Y261 SLC25A46-202ENST00000447245 1575 ntTSL 2 BASIC16.29■□□□□ 0.2
FOXA2Q9Y261 IRAK3-203ENST00000545837 1579 ntTSL 1 (best) BASIC16.29■□□□□ 0.2
FOXA2Q9Y261 TAF7-201ENST00000313368 2334 ntAPPRIS P1 BASIC16.29■□□□□ 0.2
FOXA2Q9Y261 RIMBP3C-202ENST00000433039 5784 ntAPPRIS P2 BASIC16.29■□□□□ 0.2
FOXA2Q9Y261 TMEM44-203ENST00000381975 2197 ntTSL 1 (best) BASIC16.28■□□□□ 0.2
FOXA2Q9Y261 SMG8-203ENST00000578922 2178 ntBASIC16.28■□□□□ 0.2
FOXA2Q9Y261 ALG1-202ENST00000544428 1419 ntTSL 2 BASIC16.28■□□□□ 0.2
FOXA2Q9Y261 INSM1-201ENST00000310227 2829 ntAPPRIS P1 BASIC16.28■□□□□ 0.2
FOXA2Q9Y261 SOX11-201ENST00000322002 8719 ntAPPRIS P1 BASIC16.28■□□□□ 0.2
FOXA2Q9Y261 HAND2-AS1-237ENST00000616485 2420 ntTSL 2 BASIC16.28■□□□□ 0.2
FOXA2Q9Y261 NCLN-205ENST00000590671 2070 ntTSL 2 BASIC16.28■□□□□ 0.2
FOXA2Q9Y261 CASP9-210ENST00000546424 4463 ntAPPRIS ALT2 TSL 5 BASIC16.28■□□□□ 0.2
FOXA2Q9Y261 PLEKHM2-202ENST00000375799 4122 ntAPPRIS P2 TSL 1 (best) BASIC16.28■□□□□ 0.2
FOXA2Q9Y261 GALNS-201ENST00000268695 2363 ntAPPRIS P1 TSL 1 (best) BASIC16.28■□□□□ 0.2
FOXA2Q9Y261 SRSF4-201ENST00000373795 2387 ntAPPRIS P2 TSL 1 (best) BASIC16.28■□□□□ 0.2
FOXA2Q9Y261 ENPP7-201ENST00000328313 2043 ntAPPRIS P1 TSL 1 (best) BASIC16.28■□□□□ 0.2
FOXA2Q9Y261 FOXI1-202ENST00000449804 2011 ntTSL 1 (best) BASIC16.28■□□□□ 0.2
FOXA2Q9Y261 CERKL-203ENST00000374969 1330 ntTSL 1 (best) BASIC16.28■□□□□ 0.2
FOXA2Q9Y261 FASTK-217ENST00000540185 1609 ntTSL 5 BASIC16.28■□□□□ 0.2
FOXA2Q9Y261 MLNR-201ENST00000218721 1239 ntAPPRIS P1 TSL 1 (best) BASIC16.28■□□□□ 0.2
FOXA2Q9Y261 CITED1-201ENST00000246139 1231 ntAPPRIS P3 TSL 1 (best) BASIC16.28■□□□□ 0.2
FOXA2Q9Y261 UTF1-201ENST00000304477 1157 ntAPPRIS P1 TSL 1 (best) BASIC16.28■□□□□ 0.2
FOXA2Q9Y261 AC091799.1-201ENST00000422823 811 ntBASIC16.28■□□□□ 0.2
FOXA2Q9Y261 AC007322.3-201ENST00000426526 701 ntBASIC16.28■□□□□ 0.2
FOXA2Q9Y261 AC080013.1-202ENST00000465477 674 ntTSL 5 BASIC16.28■□□□□ 0.2
FOXA2Q9Y261 DLX3-202ENST00000512495 834 ntTSL 2 BASIC16.28■□□□□ 0.2
FOXA2Q9Y261 LOXL1-AS1-208ENST00000565756 885 ntTSL 2 BASIC16.28■□□□□ 0.2
FOXA2Q9Y261 AC005789.1-201ENST00000585411 297 ntTSL 3 BASIC16.28■□□□□ 0.2
FOXA2Q9Y261 ZNF561-AS1-205ENST00000588765 579 ntTSL 4 BASIC16.28■□□□□ 0.2
FOXA2Q9Y261 UBE2Q2P2-204ENST00000618775 648 ntTSL 1 (best) BASIC16.28■□□□□ 0.2
FOXA2Q9Y261 CD99-212ENST00000624481 1089 ntAPPRIS ALT2 TSL 2 BASIC16.28■□□□□ 0.2
FOXA2Q9Y261 AC231657.2-201ENST00000624556 255 ntBASIC16.28■□□□□ 0.2
FOXA2Q9Y261 TMEM189-201ENST00000371650 2222 ntAPPRIS ALT1 TSL 1 (best) BASIC16.28■□□□□ 0.2
FOXA2Q9Y261 PELI3-202ENST00000349459 2783 ntAPPRIS P1 TSL 1 (best) BASIC16.28■□□□□ 0.2
FOXA2Q9Y261 GYG1-202ENST00000345003 2052 ntTSL 1 (best) BASIC16.28■□□□□ 0.2
FOXA2Q9Y261 FFAR3-201ENST00000327809 1796 ntAPPRIS P1 TSL 1 (best) BASIC16.28■□□□□ 0.2
FOXA2Q9Y261 RAB28-203ENST00000338176 1787 ntTSL 3 BASIC16.28■□□□□ 0.2
FOXA2Q9Y261 LGI2-201ENST00000382114 6428 ntAPPRIS P1 TSL 1 (best) BASIC16.28■□□□□ 0.2
FOXA2Q9Y261 ILDR2-207ENST00000529071 2566 ntAPPRIS ALT2 TSL 5 BASIC16.28■□□□□ 0.2
FOXA2Q9Y261 KRT8P36-201ENST00000489121 1440 ntBASIC16.28■□□□□ 0.2
FOXA2Q9Y261 NYX-202ENST00000378220 2297 ntAPPRIS P1 TSL 1 (best) BASIC16.28■□□□□ 0.2
FOXA2Q9Y261 DALRD3-201ENST00000313778 1968 ntTSL 2 BASIC16.27■□□□□ 0.2
FOXA2Q9Y261 FDXR-204ENST00000442102 1967 ntTSL 2 BASIC16.27■□□□□ 0.2
FOXA2Q9Y261 RIMBP3B-201ENST00000620804 6105 ntAPPRIS P1 BASIC16.27■□□□□ 0.2
FOXA2Q9Y261 ZSWIM8-220ENST00000604524 5465 ntTSL 5 BASIC16.27■□□□□ 0.2
FOXA2Q9Y261 MYH14-206ENST00000596571 5988 ntAPPRIS ALT2 TSL 5 BASIC16.27■□□□□ 0.2
FOXA2Q9Y261 GABRD-213ENST00000640067 1632 ntAPPRIS ALT2 TSL 5 BASIC16.27■□□□□ 0.2
FOXA2Q9Y261 ENTPD8-201ENST00000344119 2111 ntTSL 1 (best) BASIC16.27■□□□□ 0.2
FOXA2Q9Y261 PCID2-203ENST00000375457 2372 ntTSL 1 (best) BASIC16.27■□□□□ 0.2
FOXA2Q9Y261 SUMO3-201ENST00000332859 1807 ntAPPRIS P1 TSL 1 (best) BASIC16.27■□□□□ 0.2
FOXA2Q9Y261 LEFTY2-202ENST00000420304 2085 ntTSL 2 BASIC16.27■□□□□ 0.2
FOXA2Q9Y261 ENGASE-205ENST00000579016 2579 ntAPPRIS P1 TSL 1 (best) BASIC16.27■□□□□ 0.2
FOXA2Q9Y261 CD47-202ENST00000361309 1285 ntTSL 1 (best) BASIC16.27■□□□□ 0.2
FOXA2Q9Y261 KHDC3L-201ENST00000370367 1018 ntAPPRIS P1 TSL 1 (best) BASIC16.27■□□□□ 0.2
FOXA2Q9Y261 AC007322.4-201ENST00000509611 723 ntBASIC16.27■□□□□ 0.2
FOXA2Q9Y261 CD44-222ENST00000526025 1052 ntTSL 2 BASIC16.27■□□□□ 0.2
FOXA2Q9Y261 DUX4L16-201ENST00000555130 1264 ntBASIC16.27■□□□□ 0.2
FOXA2Q9Y261 VPS53-216ENST00000574029 585 ntTSL 4 BASIC16.27■□□□□ 0.2
FOXA2Q9Y261 ARFRP1-202ENST00000607873 1061 ntTSL 2 BASIC16.27■□□□□ 0.2
FOXA2Q9Y261 CYP2A7-202ENST00000301146 2281 ntAPPRIS P1 TSL 1 (best) BASIC16.27■□□□□ 0.2
FOXA2Q9Y261 RHOBTB2-201ENST00000251822 5451 ntAPPRIS P3 TSL 1 (best) BASIC16.27■□□□□ 0.19
FOXA2Q9Y261 ZNF282-204ENST00000610704 3722 ntAPPRIS P1 TSL 1 (best) BASIC16.27■□□□□ 0.19
FOXA2Q9Y261 RTN1-202ENST00000342503 1703 ntAPPRIS ALT1 TSL 1 (best) BASIC16.27■□□□□ 0.19
FOXA2Q9Y261 IKZF1-209ENST00000438033 1748 ntTSL 2 BASIC16.27■□□□□ 0.19
Retrieved 100 of 98,524 protein–RNA pairs in 16.7 ms