Protein–RNA interactions for Protein: Q9BRP4

PAAF1, Proteasomal ATPase-associated factor 1, humanhuman

Predictions only

Length 392 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PAAF1Q9BRP4 ZNF467-202ENST00000484747 913 ntTSL 2 BASIC21.61■■□□□ 1.05
PAAF1Q9BRP4 CA3-AS1-201ENST00000517697 559 ntTSL 4 BASIC21.61■■□□□ 1.05
PAAF1Q9BRP4 REXO2-216ENST00000544196 452 ntTSL 3 BASIC21.61■■□□□ 1.05
PAAF1Q9BRP4 TMEM72-203ENST00000544540 1018 ntTSL 1 (best) BASIC21.61■■□□□ 1.05
PAAF1Q9BRP4 ZNF688-205ENST00000563707 244 ntTSL 3 BASIC21.61■■□□□ 1.05
PAAF1Q9BRP4 AC097641.1-201ENST00000580671 588 ntTSL 4 BASIC21.61■■□□□ 1.05
PAAF1Q9BRP4 FAM98C-205ENST00000588262 826 ntTSL 1 (best) BASIC21.61■■□□□ 1.05
PAAF1Q9BRP4 SLC13A3-204ENST00000413164 2008 ntTSL 2 BASIC21.61■■□□□ 1.05
PAAF1Q9BRP4 CXCR3-202ENST00000373693 1624 ntAPPRIS P1 TSL 1 (best) BASIC21.61■■□□□ 1.05
PAAF1Q9BRP4 FBXO17-201ENST00000292852 2386 ntAPPRIS P1 TSL 1 (best) BASIC21.61■■□□□ 1.05
PAAF1Q9BRP4 TNFRSF25-203ENST00000351959 1441 ntAPPRIS ALT2 TSL 1 (best) BASIC21.61■■□□□ 1.05
PAAF1Q9BRP4 PITX1-201ENST00000265340 2406 ntAPPRIS P1 TSL 1 (best) BASIC21.6■■□□□ 1.05
PAAF1Q9BRP4 CIRBP-215ENST00000588030 1509 ntAPPRIS P3 TSL 5 BASIC21.6■■□□□ 1.05
PAAF1Q9BRP4 PDLIM2-207ENST00000409417 1487 ntAPPRIS P1 TSL 1 (best) BASIC21.6■■□□□ 1.05
PAAF1Q9BRP4 TSTD1-201ENST00000318289 626 ntAPPRIS P3 TSL 1 (best) BASIC21.6■■□□□ 1.05
PAAF1Q9BRP4 IMMP2L-201ENST00000331762 1205 ntAPPRIS P1 TSL 1 (best) BASIC21.6■■□□□ 1.05
PAAF1Q9BRP4 RALGPS1-206ENST00000394011 819 ntTSL 1 (best) BASIC21.6■■□□□ 1.05
PAAF1Q9BRP4 UBE2F-203ENST00000409633 837 ntTSL 3 BASIC21.6■■□□□ 1.05
PAAF1Q9BRP4 AL357874.1-201ENST00000428948 574 ntTSL 1 (best) BASIC21.6■■□□□ 1.05
PAAF1Q9BRP4 TTTY14-205ENST00000454875 544 ntTSL 2 BASIC21.6■■□□□ 1.05
PAAF1Q9BRP4 EGFEM1P-209ENST00000502332 728 ntTSL 3 BASIC21.6■■□□□ 1.05
PAAF1Q9BRP4 GTF2IRD2B-206ENST00000614064 573 ntTSL 1 (best) BASIC21.6■■□□□ 1.05
PAAF1Q9BRP4 DBNDD1-201ENST00000002501 2079 ntAPPRIS P1 TSL 2 BASIC21.6■■□□□ 1.05
PAAF1Q9BRP4 USP39-203ENST00000409470 2034 ntAPPRIS P1 TSL 1 (best) BASIC21.6■■□□□ 1.05
PAAF1Q9BRP4 RUNDC3B-207ENST00000493037 2020 ntAPPRIS ALT2 TSL 1 (best) BASIC21.6■■□□□ 1.05
PAAF1Q9BRP4 SERPINB5-201ENST00000382771 2783 ntAPPRIS P1 TSL 1 (best) BASIC21.59■■□□□ 1.05
PAAF1Q9BRP4 FAM58A-204ENST00000576892 1306 ntAPPRIS ALT2 TSL 1 (best) BASIC21.59■■□□□ 1.05
PAAF1Q9BRP4 TCF7L1-201ENST00000282111 2968 ntAPPRIS P1 TSL 1 (best) BASIC21.59■■□□□ 1.05
PAAF1Q9BRP4 ZSWIM6-201ENST00000252744 5501 ntAPPRIS P1 TSL 5 BASIC21.59■■□□□ 1.05
PAAF1Q9BRP4 COPS9-201ENST00000307266 759 ntTSL 1 (best) BASIC21.59■■□□□ 1.05
PAAF1Q9BRP4 MIR718-201ENST00000390190 70 ntBASIC21.59■■□□□ 1.05
PAAF1Q9BRP4 DNAAF3-201ENST00000391720 2169 ntAPPRIS P3 TSL 2 BASIC21.59■■□□□ 1.05
PAAF1Q9BRP4 STK24-AS1-201ENST00000434547 1278 ntTSL 1 (best) BASIC21.59■■□□□ 1.05
PAAF1Q9BRP4 SNORA78-201ENST00000459373 127 ntBASIC21.59■■□□□ 1.05
PAAF1Q9BRP4 SMIM20-201ENST00000506197 935 ntAPPRIS P1 TSL 1 (best) BASIC21.59■■□□□ 1.05
PAAF1Q9BRP4 B3GAT3-205ENST00000534026 1120 ntTSL 2 BASIC21.59■■□□□ 1.05
PAAF1Q9BRP4 EIF2AK4-209ENST00000560648 687 ntTSL 3 BASIC21.59■■□□□ 1.05
PAAF1Q9BRP4 ISG20-210ENST00000560741 800 ntAPPRIS P1 TSL 5 BASIC21.59■■□□□ 1.05
PAAF1Q9BRP4 MIR4497-201ENST00000583208 89 ntBASIC21.59■■□□□ 1.05
PAAF1Q9BRP4 MATK-215ENST00000619596 1740 ntAPPRIS P4 TSL 2 BASIC21.59■■□□□ 1.05
PAAF1Q9BRP4 DMRT2-203ENST00000358146 1965 ntAPPRIS P1 TSL 1 (best) BASIC21.59■■□□□ 1.05
PAAF1Q9BRP4 PMPCA-203ENST00000399219 1987 ntTSL 2 BASIC21.59■■□□□ 1.05
PAAF1Q9BRP4 AC006128.1-201ENST00000624704 1661 ntBASIC21.59■■□□□ 1.05
PAAF1Q9BRP4 CDIPT-201ENST00000219789 2353 ntAPPRIS P1 TSL 1 (best) BASIC21.59■■□□□ 1.05
PAAF1Q9BRP4 SLC35B2-205ENST00000538577 1909 ntTSL 2 BASIC21.59■■□□□ 1.05
PAAF1Q9BRP4 H19-201ENST00000411754 1788 ntTSL 5 BASIC21.59■■□□□ 1.05
PAAF1Q9BRP4 MON1A-203ENST00000455683 1617 ntAPPRIS ALT2 TSL 1 (best) BASIC21.58■■□□□ 1.05
PAAF1Q9BRP4 SAMD10-201ENST00000369886 2181 ntAPPRIS P1 TSL 1 (best) BASIC21.58■■□□□ 1.05
PAAF1Q9BRP4 FOXD4L3-201ENST00000342833 2039 ntAPPRIS P1 BASIC21.58■■□□□ 1.05
PAAF1Q9BRP4 FBXO28-202ENST00000424254 1334 ntTSL 1 (best) BASIC21.58■■□□□ 1.05
PAAF1Q9BRP4 HDDC3-202ENST00000394272 1880 ntAPPRIS P1 TSL 2 BASIC21.58■■□□□ 1.05
PAAF1Q9BRP4 ARMC6-201ENST00000269932 2412 ntAPPRIS P1 TSL 5 BASIC21.58■■□□□ 1.05
PAAF1Q9BRP4 ETV2-202ENST00000379026 1571 ntAPPRIS ALT2 TSL 2 BASIC21.58■■□□□ 1.05
PAAF1Q9BRP4 PIGH-201ENST00000216452 1420 ntAPPRIS P2 TSL 1 (best) BASIC21.58■■□□□ 1.05
PAAF1Q9BRP4 HOXC13-AS-201ENST00000512916 1408 ntTSL 3 BASIC21.58■■□□□ 1.05
PAAF1Q9BRP4 TNIP1-205ENST00000518977 2200 ntAPPRIS ALT2 TSL 1 (best) BASIC21.58■■□□□ 1.05
PAAF1Q9BRP4 LYPD1-201ENST00000345008 1033 ntTSL 1 (best) BASIC21.58■■□□□ 1.05
PAAF1Q9BRP4 PSMG1-202ENST00000380900 907 ntTSL 1 (best) BASIC21.58■■□□□ 1.05
PAAF1Q9BRP4 CXADR-204ENST00000400166 1080 ntTSL 1 (best) BASIC21.58■■□□□ 1.05
PAAF1Q9BRP4 HOXB-AS3-204ENST00000466037 522 ntTSL 3 BASIC21.58■■□□□ 1.05
PAAF1Q9BRP4 TNFRSF18-204ENST00000486728 727 ntAPPRIS ALT2 TSL 1 (best) BASIC21.58■■□□□ 1.05
PAAF1Q9BRP4 MRPL2-207ENST00000487429 905 ntTSL 1 (best) BASIC21.58■■□□□ 1.05
PAAF1Q9BRP4 UBE2K-204ENST00000503368 891 ntTSL 1 (best) BASIC21.58■■□□□ 1.05
PAAF1Q9BRP4 EXOSC4-202ENST00000525936 606 ntTSL 3 BASIC21.58■■□□□ 1.05
PAAF1Q9BRP4 ANP32AP1-202ENST00000560832 1074 ntTSL 1 (best) BASIC21.58■■□□□ 1.05
PAAF1Q9BRP4 UBALD1-209ENST00000591897 1275 ntTSL 2 BASIC21.58■■□□□ 1.05
PAAF1Q9BRP4 AL353593.2-202ENST00000602947 550 ntTSL 4 BASIC21.58■■□□□ 1.05
PAAF1Q9BRP4 AC110285.5-201ENST00000611501 352 ntBASIC21.58■■□□□ 1.05
PAAF1Q9BRP4 Six3os1_6.1-201ENST00000620790 196 ntBASIC21.58■■□□□ 1.05
PAAF1Q9BRP4 MCAT-201ENST00000290429 2056 ntAPPRIS P1 TSL 1 (best) BASIC21.58■■□□□ 1.05
PAAF1Q9BRP4 ZNF668-209ENST00000539836 2469 ntTSL 5 BASIC21.58■■□□□ 1.05
PAAF1Q9BRP4 AKT2-234ENST00000579047 2029 ntTSL 1 (best) BASIC21.58■■□□□ 1.04
PAAF1Q9BRP4 EGFL7-201ENST00000308874 1747 ntAPPRIS P1 TSL 1 (best) BASIC21.58■■□□□ 1.04
PAAF1Q9BRP4 AC009126.1-201ENST00000501338 2245 ntTSL 2 BASIC21.57■■□□□ 1.04
PAAF1Q9BRP4 PUF60-203ENST00000453551 1842 ntTSL 1 (best) BASIC21.57■■□□□ 1.04
PAAF1Q9BRP4 PKMYT1-204ENST00000440027 2061 ntTSL 2 BASIC21.57■■□□□ 1.04
PAAF1Q9BRP4 KLHDC4-204ENST00000353170 1663 ntAPPRIS ALT2 TSL 1 (best) BASIC21.57■■□□□ 1.04
PAAF1Q9BRP4 POU5F1-201ENST00000259915 1420 ntAPPRIS P1 TSL 1 (best) BASIC21.57■■□□□ 1.04
PAAF1Q9BRP4 WDR74-201ENST00000278856 1289 ntAPPRIS P1 TSL 1 (best) BASIC21.57■■□□□ 1.04
PAAF1Q9BRP4 MDFI-202ENST00000373050 809 ntTSL 2 BASIC21.57■■□□□ 1.04
PAAF1Q9BRP4 C5orf56-203ENST00000378953 942 ntAPPRIS ALT2 TSL 2 BASIC21.57■■□□□ 1.04
PAAF1Q9BRP4 RARRES1-204ENST00000479756 839 ntTSL 1 (best) BASIC21.57■■□□□ 1.04
PAAF1Q9BRP4 AC108693.2-201ENST00000492981 303 ntTSL 3 BASIC21.57■■□□□ 1.04
PAAF1Q9BRP4 AC005224.2-201ENST00000571192 1885 ntTSL 2 BASIC21.57■■□□□ 1.04
PAAF1Q9BRP4 EPS8L2-230ENST00000610855 1633 ntTSL 5 BASIC21.57■■□□□ 1.04
PAAF1Q9BRP4 C22orf39-206ENST00000611555 1977 ntTSL 1 (best) BASIC21.57■■□□□ 1.04
PAAF1Q9BRP4 EEF1A2-202ENST00000298049 1748 ntAPPRIS P1 TSL 1 (best) BASIC21.57■■□□□ 1.04
PAAF1Q9BRP4 OSR2-202ENST00000435298 1736 ntTSL 1 (best) BASIC21.57■■□□□ 1.04
PAAF1Q9BRP4 LSM14A-202ENST00000540746 2152 ntTSL 2 BASIC21.57■■□□□ 1.04
PAAF1Q9BRP4 ASPHD1-201ENST00000308748 1584 ntAPPRIS P2 TSL 1 (best) BASIC21.57■■□□□ 1.04
PAAF1Q9BRP4 B4GALT2-204ENST00000434555 1923 ntTSL 1 (best) BASIC21.57■■□□□ 1.04
PAAF1Q9BRP4 SLC35A3-210ENST00000638371 2298 ntTSL 5 BASIC21.57■■□□□ 1.04
PAAF1Q9BRP4 MYBL1-204ENST00000522677 5192 ntAPPRIS P1 TSL 1 (best) BASIC21.57■■□□□ 1.04
PAAF1Q9BRP4 KLC2-207ENST00000421552 2721 ntTSL 5 BASIC21.57■■□□□ 1.04
PAAF1Q9BRP4 EEF1D-225ENST00000529272 1311 ntAPPRIS ALT2 TSL 2 BASIC21.56■■□□□ 1.04
PAAF1Q9BRP4 AC007383.3-201ENST00000453039 1411 ntTSL 3 BASIC21.56■■□□□ 1.04
PAAF1Q9BRP4 ZNF669-201ENST00000343381 1951 ntAPPRIS P3 TSL 1 (best) BASIC21.56■■□□□ 1.04
PAAF1Q9BRP4 RHOG-202ENST00000396978 1066 ntAPPRIS P1 TSL 3 BASIC21.56■■□□□ 1.04
PAAF1Q9BRP4 RPS2P55-201ENST00000397318 883 ntBASIC21.56■■□□□ 1.04
PAAF1Q9BRP4 RBCK1-213ENST00000475269 1200 ntTSL 1 (best) BASIC21.56■■□□□ 1.04
Retrieved 100 of 98,524 protein–RNA pairs in 23.1 ms