Protein–RNA interactions for Protein: Q8NHS4

CLHC1, Clathrin heavy chain linker domain-containing protein 1, humanhuman

Predictions only

Length 586 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CLHC1Q8NHS4 AC003957.1-201ENST00000625108 2673 ntBASIC19.33■□□□□ 0.68
CLHC1Q8NHS4 CRMP1-201ENST00000324989 3146 ntTSL 1 (best) BASIC19.33■□□□□ 0.68
CLHC1Q8NHS4 KLC2-204ENST00000394067 2898 ntAPPRIS P1 TSL 1 (best) BASIC19.33■□□□□ 0.68
CLHC1Q8NHS4 PTGER2-201ENST00000245457 2383 ntAPPRIS P1 TSL 1 (best) BASIC19.33■□□□□ 0.68
CLHC1Q8NHS4 PARP2-202ENST00000429687 1881 ntAPPRIS ALT2 TSL 1 (best) BASIC19.33■□□□□ 0.68
CLHC1Q8NHS4 SOCS2-201ENST00000340600 2761 ntAPPRIS P1 TSL 1 (best) BASIC19.32■□□□□ 0.68
CLHC1Q8NHS4 SOX2-201ENST00000325404 2513 ntAPPRIS P1 BASIC19.32■□□□□ 0.68
CLHC1Q8NHS4 JMJD4-202ENST00000438896 2502 ntTSL 2 BASIC19.32■□□□□ 0.68
CLHC1Q8NHS4 IGFBP1-203ENST00000468955 1369 ntTSL 5 BASIC19.32■□□□□ 0.68
CLHC1Q8NHS4 TRABD2A-201ENST00000335459 1844 ntTSL 1 (best) BASIC19.32■□□□□ 0.68
CLHC1Q8NHS4 C3orf18-203ENST00000426034 2486 ntAPPRIS P1 TSL 1 (best) BASIC19.32■□□□□ 0.68
CLHC1Q8NHS4 GNB1-201ENST00000378609 3132 ntAPPRIS P1 TSL 1 (best) BASIC19.32■□□□□ 0.68
CLHC1Q8NHS4 ASPG-201ENST00000546892 1791 ntAPPRIS ALT2 TSL 1 (best) BASIC19.32■□□□□ 0.68
CLHC1Q8NHS4 RETREG2-203ENST00000430297 4618 ntAPPRIS P1 TSL 1 (best) BASIC19.32■□□□□ 0.68
CLHC1Q8NHS4 TMEM121-201ENST00000392519 1532 ntAPPRIS P1 TSL 1 (best) BASIC19.32■□□□□ 0.68
CLHC1Q8NHS4 SLC25A39-212ENST00000590194 1542 ntAPPRIS P3 TSL 5 BASIC19.32■□□□□ 0.68
CLHC1Q8NHS4 EML2-220ENST00000589876 2364 ntAPPRIS ALT2 TSL 1 (best) BASIC19.32■□□□□ 0.68
CLHC1Q8NHS4 CASKIN1-201ENST00000343516 5759 ntAPPRIS P1 TSL 1 (best) BASIC19.32■□□□□ 0.68
CLHC1Q8NHS4 ENTPD8-201ENST00000344119 2111 ntTSL 1 (best) BASIC19.32■□□□□ 0.68
CLHC1Q8NHS4 DHRS4-202ENST00000397074 785 ntTSL 5 BASIC19.32■□□□□ 0.68
CLHC1Q8NHS4 BMP1-204ENST00000397814 836 ntTSL 4 BASIC19.32■□□□□ 0.68
CLHC1Q8NHS4 KCTD1-202ENST00000408011 2103 ntAPPRIS P1 TSL 1 (best) BASIC19.32■□□□□ 0.68
CLHC1Q8NHS4 UQCRFS1P1-201ENST00000435169 820 ntBASIC19.32■□□□□ 0.68
CLHC1Q8NHS4 AC034268.1-201ENST00000441047 882 ntBASIC19.32■□□□□ 0.68
CLHC1Q8NHS4 CDKN3-204ENST00000442975 727 ntTSL 1 (best) BASIC19.32■□□□□ 0.68
CLHC1Q8NHS4 AC068385.1-201ENST00000533218 409 ntTSL 3 BASIC19.32■□□□□ 0.68
CLHC1Q8NHS4 ABCC6P2-202ENST00000542005 706 ntTSL 1 (best) BASIC19.32■□□□□ 0.68
CLHC1Q8NHS4 AC044860.1-203ENST00000560811 844 ntTSL 3 BASIC19.32■□□□□ 0.68
CLHC1Q8NHS4 NMRAL1-212ENST00000574425 1240 ntAPPRIS P1 TSL 2 BASIC19.32■□□□□ 0.68
CLHC1Q8NHS4 ABCC6-204ENST00000575728 714 ntTSL 1 (best) BASIC19.32■□□□□ 0.68
CLHC1Q8NHS4 AC087623.3-201ENST00000607047 1098 ntBASIC19.32■□□□□ 0.68
CLHC1Q8NHS4 RHOBTB2-201ENST00000251822 5451 ntAPPRIS P3 TSL 1 (best) BASIC19.32■□□□□ 0.68
CLHC1Q8NHS4 MKRN1-208ENST00000474576 1661 ntTSL 5 BASIC19.32■□□□□ 0.68
CLHC1Q8NHS4 TACC3-213ENST00000617535 1693 ntTSL 5 BASIC19.32■□□□□ 0.68
CLHC1Q8NHS4 SOX11-201ENST00000322002 8719 ntAPPRIS P1 BASIC19.32■□□□□ 0.68
CLHC1Q8NHS4 SLC16A5-202ENST00000450736 2051 ntAPPRIS P2 TSL 1 (best) BASIC19.32■□□□□ 0.68
CLHC1Q8NHS4 CDK13-202ENST00000340829 5066 ntAPPRIS ALT1 TSL 1 (best) BASIC19.32■□□□□ 0.68
CLHC1Q8NHS4 DPH1-201ENST00000263083 2221 ntAPPRIS P2 TSL 1 (best) BASIC19.32■□□□□ 0.68
CLHC1Q8NHS4 BACE2-201ENST00000328735 2824 ntTSL 1 (best) BASIC19.32■□□□□ 0.68
CLHC1Q8NHS4 PROB1-201ENST00000434752 5122 ntAPPRIS P1 BASIC19.32■□□□□ 0.68
CLHC1Q8NHS4 AUH-202ENST00000375731 1577 ntAPPRIS P1 TSL 1 (best) BASIC19.32■□□□□ 0.68
CLHC1Q8NHS4 SLC25A46-202ENST00000447245 1575 ntTSL 2 BASIC19.32■□□□□ 0.68
CLHC1Q8NHS4 STX18-205ENST00000505286 1380 ntTSL 1 (best) BASIC19.32■□□□□ 0.68
CLHC1Q8NHS4 SPATA22-214ENST00000575375 1374 ntAPPRIS P1 TSL 1 (best) BASIC19.32■□□□□ 0.68
CLHC1Q8NHS4 PFKFB3-219ENST00000640683 2311 ntTSL 5 BASIC19.31■□□□□ 0.68
CLHC1Q8NHS4 AMZ1-202ENST00000407112 1862 ntTSL 2 BASIC19.31■□□□□ 0.68
CLHC1Q8NHS4 GPR78-201ENST00000382487 1694 ntAPPRIS P1 TSL 1 (best) BASIC19.31■□□□□ 0.68
CLHC1Q8NHS4 C3orf18-205ENST00000441239 1490 ntTSL 1 (best) BASIC19.31■□□□□ 0.68
CLHC1Q8NHS4 CDC42SE2-206ENST00000503291 2025 ntTSL 1 (best) BASIC19.31■□□□□ 0.68
CLHC1Q8NHS4 LHX3-202ENST00000371748 2365 ntTSL 1 (best) BASIC19.31■□□□□ 0.68
CLHC1Q8NHS4 NFIX-202ENST00000360105 5459 ntTSL 5 BASIC19.31■□□□□ 0.68
CLHC1Q8NHS4 GCH1-205ENST00000536224 1805 ntTSL 1 (best) BASIC19.31■□□□□ 0.68
CLHC1Q8NHS4 BHLHA9-201ENST00000391429 902 ntAPPRIS P1 BASIC19.31■□□□□ 0.68
CLHC1Q8NHS4 VMO1-204ENST00000441199 741 ntTSL 2 BASIC19.31■□□□□ 0.68
CLHC1Q8NHS4 AC105001.1-201ENST00000506149 821 ntTSL 1 (best) BASIC19.31■□□□□ 0.68
CLHC1Q8NHS4 DBI-210ENST00000542275 757 ntTSL 5 BASIC19.31■□□□□ 0.68
CLHC1Q8NHS4 AC140479.5-201ENST00000568189 735 ntTSL 3 BASIC19.31■□□□□ 0.68
CLHC1Q8NHS4 AP001005.4-202ENST00000575325 560 ntTSL 4 BASIC19.31■□□□□ 0.68
CLHC1Q8NHS4 AC244517.4-202ENST00000624089 484 ntTSL 3 BASIC19.31■□□□□ 0.68
CLHC1Q8NHS4 CD247-201ENST00000362089 1609 ntAPPRIS P4 TSL 1 (best) BASIC19.31■□□□□ 0.68
CLHC1Q8NHS4 ENTPD5-206ENST00000556242 1437 ntTSL 5 BASIC19.31■□□□□ 0.68
CLHC1Q8NHS4 MSLN-201ENST00000382862 2116 ntAPPRIS P3 TSL 5 BASIC19.31■□□□□ 0.68
CLHC1Q8NHS4 GLG1-214ENST00000627032 2147 ntTSL 5 BASIC19.31■□□□□ 0.68
CLHC1Q8NHS4 HNRNPA3-204ENST00000435711 1731 ntAPPRIS P3 TSL 1 (best) BASIC19.31■□□□□ 0.68
CLHC1Q8NHS4 IKZF1-209ENST00000438033 1748 ntTSL 2 BASIC19.31■□□□□ 0.68
CLHC1Q8NHS4 CHP2-201ENST00000300113 2382 ntAPPRIS P1 TSL 1 (best) BASIC19.3■□□□□ 0.68
CLHC1Q8NHS4 ST6GAL2-203ENST00000409087 1657 ntTSL 1 (best) BASIC19.3■□□□□ 0.68
CLHC1Q8NHS4 LINC01558-202ENST00000495520 1652 ntTSL 2 BASIC19.3■□□□□ 0.68
CLHC1Q8NHS4 ISCA1-203ENST00000375991 1958 ntAPPRIS P1 TSL 1 (best) BASIC19.3■□□□□ 0.68
CLHC1Q8NHS4 AVPI1-201ENST00000370626 1457 ntAPPRIS P1 TSL 1 (best) BASIC19.3■□□□□ 0.68
CLHC1Q8NHS4 FAM167A-207ENST00000534308 1642 ntAPPRIS P1 TSL 1 (best) BASIC19.3■□□□□ 0.68
CLHC1Q8NHS4 BIN2-210ENST00000615107 2255 ntAPPRIS P1 TSL 1 (best) BASIC19.3■□□□□ 0.68
CLHC1Q8NHS4 PAQR6-205ENST00000368270 1765 ntTSL 1 (best) BASIC19.3■□□□□ 0.68
CLHC1Q8NHS4 RNF224-201ENST00000445101 1798 ntAPPRIS P1 TSL 3 BASIC19.3■□□□□ 0.68
CLHC1Q8NHS4 MBD1-216ENST00000587605 1945 ntTSL 2 BASIC19.3■□□□□ 0.68
CLHC1Q8NHS4 NFKBIB-201ENST00000313582 1159 ntAPPRIS P1 TSL 1 (best) BASIC19.3■□□□□ 0.68
CLHC1Q8NHS4 SAPCD2P1-201ENST00000395413 1184 ntBASIC19.3■□□□□ 0.68
CLHC1Q8NHS4 MPRIP-203ENST00000395806 527 ntTSL 3 BASIC19.3■□□□□ 0.68
CLHC1Q8NHS4 C2orf50-202ENST00000405022 980 ntAPPRIS P1 TSL 2 BASIC19.3■□□□□ 0.68
CLHC1Q8NHS4 ATP6V0B-205ENST00000472174 1298 ntAPPRIS P1 TSL 1 (best) BASIC19.3■□□□□ 0.68
CLHC1Q8NHS4 TMEM70-203ENST00000517439 617 ntTSL 2 BASIC19.3■□□□□ 0.68
CLHC1Q8NHS4 PLD4-205ENST00000553861 667 ntTSL 2 BASIC19.3■□□□□ 0.68
CLHC1Q8NHS4 AC010536.3-201ENST00000620306 533 ntBASIC19.3■□□□□ 0.68
CLHC1Q8NHS4 CYB561-213ENST00000581573 2344 ntAPPRIS P1 TSL 1 (best) BASIC19.3■□□□□ 0.68
CLHC1Q8NHS4 MTMR14-201ENST00000296003 2494 ntAPPRIS P4 TSL 1 (best) BASIC19.3■□□□□ 0.68
CLHC1Q8NHS4 ESR1-210ENST00000456483 1368 ntTSL 1 (best) BASIC19.3■□□□□ 0.68
CLHC1Q8NHS4 NAE1-201ENST00000290810 1837 ntAPPRIS P1 TSL 1 (best) BASIC19.3■□□□□ 0.68
CLHC1Q8NHS4 PLSCR3-212ENST00000576201 1965 ntAPPRIS P1 TSL 1 (best) BASIC19.3■□□□□ 0.68
CLHC1Q8NHS4 TBC1D2B-202ENST00000409931 6086 ntAPPRIS P3 TSL 1 (best) BASIC19.3■□□□□ 0.68
CLHC1Q8NHS4 FAM83H-201ENST00000388913 5654 ntAPPRIS P1 TSL 5 BASIC19.29■□□□□ 0.68
CLHC1Q8NHS4 PPP5C-202ENST00000391919 1929 ntTSL 5 BASIC19.29■□□□□ 0.68
CLHC1Q8NHS4 MAEA-213ENST00000510794 1607 ntTSL 2 BASIC19.29■□□□□ 0.68
CLHC1Q8NHS4 CCDC47-202ENST00000403162 2195 ntAPPRIS P1 TSL 2 BASIC19.29■□□□□ 0.68
CLHC1Q8NHS4 C19orf25-202ENST00000436106 2403 ntAPPRIS P1 TSL 1 (best) BASIC19.29■□□□□ 0.68
CLHC1Q8NHS4 GP9-201ENST00000307395 889 ntAPPRIS P1 TSL 1 (best) BASIC19.29■□□□□ 0.68
CLHC1Q8NHS4 STX7-201ENST00000367937 1090 ntTSL 5 BASIC19.29■□□□□ 0.68
CLHC1Q8NHS4 DNAJC1-202ENST00000376980 2106 ntAPPRIS P1 TSL 1 (best) BASIC19.29■□□□□ 0.68
CLHC1Q8NHS4 AC097381.1-201ENST00000429019 1296 ntBASIC19.29■□□□□ 0.68
CLHC1Q8NHS4 COX4I1-216ENST00000568794 794 ntTSL 5 BASIC19.29■□□□□ 0.68
CLHC1Q8NHS4 H2AFB3-201ENST00000615853 591 ntAPPRIS P1 BASIC19.29■□□□□ 0.68
Retrieved 100 of 98,524 protein–RNA pairs in 42.3 ms