Protein–RNA interactions for Protein: Q8NCR9

CLRN3, Clarin-3, humanhuman

Predictions only

Length 226 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CLRN3Q8NCR9 RFTN1-201ENST00000334133 2982 ntAPPRIS P2 TSL 1 (best) BASIC16.11■□□□□ 0.17
CLRN3Q8NCR9 AC068134.2-201ENST00000437095 576 ntTSL 3 BASIC16.11■□□□□ 0.17
CLRN3Q8NCR9 UBALD1-203ENST00000587649 707 ntTSL 3 BASIC16.11■□□□□ 0.17
CLRN3Q8NCR9 AC092296.2-201ENST00000589470 999 ntBASIC16.11■□□□□ 0.17
CLRN3Q8NCR9 CASTOR2-201ENST00000616305 1257 ntAPPRIS P1 TSL 1 (best) BASIC16.11■□□□□ 0.17
CLRN3Q8NCR9 SEPT5-201ENST00000383045 1588 ntTSL 5 BASIC16.11■□□□□ 0.17
CLRN3Q8NCR9 ODF3L2-201ENST00000315489 1604 ntAPPRIS P2 TSL 1 (best) BASIC16.11■□□□□ 0.17
CLRN3Q8NCR9 KLHL21-206ENST00000610898 1945 ntTSL 1 (best) BASIC16.11■□□□□ 0.17
CLRN3Q8NCR9 ACADVL-205ENST00000543245 2227 ntTSL 2 BASIC16.11■□□□□ 0.17
CLRN3Q8NCR9 TCEA1-208ENST00000521604 2858 ntAPPRIS P1 TSL 1 (best) BASIC16.11■□□□□ 0.17
CLRN3Q8NCR9 MLXIP-201ENST00000319080 8427 ntAPPRIS P1 TSL 1 (best) BASIC16.11■□□□□ 0.17
CLRN3Q8NCR9 BOD1L2-201ENST00000585477 3239 ntAPPRIS P1 BASIC16.11■□□□□ 0.17
CLRN3Q8NCR9 ZNF623-203ENST00000526926 2612 ntAPPRIS ALT2 TSL 2 BASIC16.11■□□□□ 0.17
CLRN3Q8NCR9 NOMO2-212ENST00000622306 4252 ntAPPRIS P3 TSL 1 (best) BASIC16.11■□□□□ 0.17
CLRN3Q8NCR9 GYG1-202ENST00000345003 2052 ntTSL 1 (best) BASIC16.1■□□□□ 0.17
CLRN3Q8NCR9 RUSC2-202ENST00000455600 5636 ntAPPRIS P1 TSL 1 (best) BASIC16.1■□□□□ 0.17
CLRN3Q8NCR9 AC009113.1-201ENST00000570267 2443 ntBASIC16.1■□□□□ 0.17
CLRN3Q8NCR9 RRN3-205ENST00000563559 2128 ntTSL 5 BASIC16.1■□□□□ 0.17
CLRN3Q8NCR9 H1FX-201ENST00000333762 1507 ntAPPRIS P1 BASIC16.1■□□□□ 0.17
CLRN3Q8NCR9 SEMA3B-209ENST00000456560 2221 ntTSL 1 (best) BASIC16.1■□□□□ 0.17
CLRN3Q8NCR9 RWDD4-202ENST00000327570 2590 ntAPPRIS ALT1 TSL 3 BASIC16.1■□□□□ 0.17
CLRN3Q8NCR9 ACSL1-205ENST00000504900 1583 ntTSL 5 BASIC16.1■□□□□ 0.17
CLRN3Q8NCR9 ARL6IP4-220ENST00000543566 1591 ntAPPRIS ALT2 TSL 1 (best) BASIC16.1■□□□□ 0.17
CLRN3Q8NCR9 ZNF582-207ENST00000619584 2297 ntAPPRIS P1 TSL 1 (best) BASIC16.1■□□□□ 0.17
CLRN3Q8NCR9 GABRD-201ENST00000378585 1961 ntAPPRIS P2 TSL 1 (best) BASIC16.1■□□□□ 0.17
CLRN3Q8NCR9 AC004687.1-201ENST00000579003 1625 ntBASIC16.1■□□□□ 0.17
CLRN3Q8NCR9 LBH-205ENST00000407930 756 ntTSL 2 BASIC16.1■□□□□ 0.17
CLRN3Q8NCR9 TTC39C-209ENST00000584250 1048 ntTSL 1 (best) BASIC16.1■□□□□ 0.17
CLRN3Q8NCR9 WFIKKN1-201ENST00000319070 2028 ntAPPRIS P1 TSL 1 (best) BASIC16.1■□□□□ 0.17
CLRN3Q8NCR9 BAIAP2-204ENST00000428708 2095 ntAPPRIS ALT2 TSL 1 (best) BASIC16.1■□□□□ 0.17
CLRN3Q8NCR9 MORF4L2-AS1-201ENST00000435306 2086 ntTSL 1 (best) BASIC16.1■□□□□ 0.17
CLRN3Q8NCR9 EXD3-201ENST00000340951 2872 ntAPPRIS P1 TSL 1 (best) BASIC16.1■□□□□ 0.17
CLRN3Q8NCR9 CATSPER2-201ENST00000321596 1820 ntAPPRIS P3 TSL 5 BASIC16.1■□□□□ 0.17
CLRN3Q8NCR9 LHX3-203ENST00000619587 2698 ntTSL 1 (best) BASIC16.1■□□□□ 0.17
CLRN3Q8NCR9 PALM3-201ENST00000340790 2262 ntAPPRIS P2 TSL 5 BASIC16.1■□□□□ 0.17
CLRN3Q8NCR9 WBP2-204ENST00000585462 1895 ntTSL 3 BASIC16.1■□□□□ 0.17
CLRN3Q8NCR9 Z82202.1-201ENST00000623446 1880 ntBASIC16.1■□□□□ 0.17
CLRN3Q8NCR9 LINC01089-202ENST00000429892 1521 ntTSL 1 (best) BASIC16.09■□□□□ 0.17
CLRN3Q8NCR9 AC127496.1-202ENST00000573602 2091 ntTSL 2 BASIC16.09■□□□□ 0.17
CLRN3Q8NCR9 LBX2-AS1-202ENST00000603175 2083 ntBASIC16.09■□□□□ 0.17
CLRN3Q8NCR9 DACT2-204ENST00000610183 2088 ntAPPRIS ALT2 TSL 1 (best) BASIC16.09■□□□□ 0.17
CLRN3Q8NCR9 SLC35F5-201ENST00000245680 4412 ntAPPRIS P1 TSL 1 (best) BASIC16.09■□□□□ 0.17
CLRN3Q8NCR9 AJUBA-202ENST00000361265 2569 ntAPPRIS P1 TSL 1 (best) BASIC16.09■□□□□ 0.17
CLRN3Q8NCR9 PRR36-202ENST00000618550 4456 ntAPPRIS P2 TSL 5 BASIC16.09■□□□□ 0.17
CLRN3Q8NCR9 AKIRIN2-201ENST00000257787 1662 ntAPPRIS P1 TSL 1 (best) BASIC16.09■□□□□ 0.17
CLRN3Q8NCR9 SAXO1-201ENST00000380530 1727 ntAPPRIS ALT2 TSL 2 BASIC16.09■□□□□ 0.17
CLRN3Q8NCR9 SCNN1D-206ENST00000400928 2731 ntAPPRIS ALT2 TSL 5 BASIC16.09■□□□□ 0.17
CLRN3Q8NCR9 VIPR1-201ENST00000325123 2773 ntAPPRIS P1 TSL 1 (best) BASIC16.09■□□□□ 0.17
CLRN3Q8NCR9 NRN1-204ENST00000622188 1795 ntTSL 2 BASIC16.09■□□□□ 0.17
CLRN3Q8NCR9 ITPK1-202ENST00000354313 2803 ntTSL 1 (best) BASIC16.09■□□□□ 0.17
CLRN3Q8NCR9 CIRBP-225ENST00000589710 1835 ntTSL 2 BASIC16.09■□□□□ 0.17
CLRN3Q8NCR9 MSL1-202ENST00000398532 4707 ntTSL 1 (best) BASIC16.09■□□□□ 0.17
CLRN3Q8NCR9 CCDC157-203ENST00000405659 3052 ntAPPRIS P3 TSL 1 (best) BASIC16.09■□□□□ 0.17
CLRN3Q8NCR9 FGFR3-205ENST00000440486 4287 ntAPPRIS P3 TSL 5 BASIC16.09■□□□□ 0.17
CLRN3Q8NCR9 SLC16A3-222ENST00000619321 2015 ntAPPRIS P1 TSL 5 BASIC16.09■□□□□ 0.17
CLRN3Q8NCR9 ABHD16B-201ENST00000369916 1491 ntAPPRIS P1 BASIC16.09■□□□□ 0.17
CLRN3Q8NCR9 COMT-206ENST00000407537 1457 ntAPPRIS P3 TSL 5 BASIC16.09■□□□□ 0.17
CLRN3Q8NCR9 LDHD-201ENST00000300051 2067 ntAPPRIS P3 TSL 1 (best) BASIC16.09■□□□□ 0.17
CLRN3Q8NCR9 SYTL3-203ENST00000367081 2692 ntAPPRIS P3 TSL 5 BASIC16.09■□□□□ 0.17
CLRN3Q8NCR9 SLC22A23-203ENST00000406686 5658 ntAPPRIS P2 TSL 5 BASIC16.09■□□□□ 0.17
CLRN3Q8NCR9 SCARB1-203ENST00000415380 2731 ntTSL 2 BASIC16.09■□□□□ 0.17
CLRN3Q8NCR9 VKORC1L1-202ENST00000434382 1541 ntTSL 2 BASIC16.09■□□□□ 0.17
CLRN3Q8NCR9 CARNS1-202ENST00000445895 3971 ntAPPRIS P1 TSL 5 BASIC16.09■□□□□ 0.17
CLRN3Q8NCR9 FIGNL2-202ENST00000618634 4812 ntAPPRIS P1 TSL 5 BASIC16.08■□□□□ 0.17
CLRN3Q8NCR9 PTPN5-202ENST00000396166 2299 ntTSL 2 BASIC16.08■□□□□ 0.17
CLRN3Q8NCR9 PCDHA4-201ENST00000378125 2328 ntTSL 5 BASIC16.08■□□□□ 0.17
CLRN3Q8NCR9 AC007192.1-201ENST00000593731 5142 ntAPPRIS P1 TSL 2 BASIC16.08■□□□□ 0.17
CLRN3Q8NCR9 GNB1-201ENST00000378609 3132 ntAPPRIS P1 TSL 1 (best) BASIC16.08■□□□□ 0.17
CLRN3Q8NCR9 HIBCH-202ENST00000392332 2463 ntTSL 1 (best) BASIC16.08■□□□□ 0.17
CLRN3Q8NCR9 RANBP10-201ENST00000317506 5341 ntAPPRIS P2 TSL 1 (best) BASIC16.08■□□□□ 0.17
CLRN3Q8NCR9 SLC25A22-216ENST00000531214 1790 ntAPPRIS P1 TSL 2 BASIC16.08■□□□□ 0.17
CLRN3Q8NCR9 RANBP10-209ENST00000630626 5305 ntAPPRIS ALT2 TSL 5 BASIC16.08■□□□□ 0.17
CLRN3Q8NCR9 TMPRSS9-205ENST00000613480 2568 ntTSL 1 (best) BASIC16.08■□□□□ 0.17
CLRN3Q8NCR9 RNF121-201ENST00000361756 2625 ntAPPRIS P1 TSL 1 (best) BASIC16.08■□□□□ 0.17
CLRN3Q8NCR9 FAM57A-201ENST00000301324 2013 ntTSL 1 (best) BASIC16.08■□□□□ 0.16
CLRN3Q8NCR9 PIGQ-206ENST00000422307 2052 ntTSL 3 BASIC16.08■□□□□ 0.16
CLRN3Q8NCR9 GCH1-207ENST00000622544 2923 ntAPPRIS P1 TSL 1 (best) BASIC16.08■□□□□ 0.16
CLRN3Q8NCR9 PPP4R4-202ENST00000328839 876 ntTSL 1 (best) BASIC16.08■□□□□ 0.16
CLRN3Q8NCR9 DNAJC1-202ENST00000376980 2106 ntAPPRIS P1 TSL 1 (best) BASIC16.08■□□□□ 0.16
CLRN3Q8NCR9 VIPR2-204ENST00000421760 717 ntTSL 3 BASIC16.08■□□□□ 0.16
CLRN3Q8NCR9 TMEM114-202ENST00000568335 899 ntTSL 3 BASIC16.08■□□□□ 0.16
CLRN3Q8NCR9 AC026202.3-201ENST00000600805 1127 ntBASIC16.08■□□□□ 0.16
CLRN3Q8NCR9 AP1S1-201ENST00000337619 1306 ntAPPRIS P1 TSL 1 (best) BASIC16.08■□□□□ 0.16
CLRN3Q8NCR9 DAGLB-204ENST00000436575 2385 ntTSL 2 BASIC16.08■□□□□ 0.16
CLRN3Q8NCR9 LTF-203ENST00000426532 2494 ntTSL 2 BASIC16.08■□□□□ 0.16
CLRN3Q8NCR9 NARFL-218ENST00000568545 2486 ntTSL 2 BASIC16.08■□□□□ 0.16
CLRN3Q8NCR9 SLC25A1-201ENST00000215882 1648 ntAPPRIS P1 TSL 1 (best) BASIC16.08■□□□□ 0.16
CLRN3Q8NCR9 SCO1-203ENST00000577427 1601 ntTSL 3 BASIC16.08■□□□□ 0.16
CLRN3Q8NCR9 MXRA8-209ENST00000477278 2728 ntTSL 5 BASIC16.08■□□□□ 0.16
CLRN3Q8NCR9 PJA1-201ENST00000361478 2755 ntAPPRIS P4 TSL 1 (best) BASIC16.08■□□□□ 0.16
CLRN3Q8NCR9 C16orf59-201ENST00000361837 1662 ntAPPRIS P2 TSL 1 (best) BASIC16.08■□□□□ 0.16
CLRN3Q8NCR9 AC133785.1-201ENST00000429282 2824 ntTSL 2 BASIC16.08■□□□□ 0.16
CLRN3Q8NCR9 GABBR1-202ENST00000376977 1739 ntTSL 1 (best) BASIC16.08■□□□□ 0.16
CLRN3Q8NCR9 CHD1L-204ENST00000431239 2907 ntTSL 5 BASIC16.08■□□□□ 0.16
CLRN3Q8NCR9 PTGER3-212ENST00000628037 1815 ntAPPRIS ALT2 TSL 1 (best) BASIC16.08■□□□□ 0.16
CLRN3Q8NCR9 FP700111.2-201ENST00000619190 1892 ntBASIC16.08■□□□□ 0.16
CLRN3Q8NCR9 RNF112-201ENST00000461366 3212 ntAPPRIS P1 TSL 1 (best) BASIC16.07■□□□□ 0.16
CLRN3Q8NCR9 RREB1-203ENST00000379933 5826 ntTSL 1 (best) BASIC16.07■□□□□ 0.16
CLRN3Q8NCR9 TP53BP2-202ENST00000391878 4741 ntTSL 1 (best) BASIC16.07■□□□□ 0.16
CLRN3Q8NCR9 AC013275.1-201ENST00000413602 2019 ntTSL 1 (best) BASIC16.07■□□□□ 0.16
Retrieved 100 of 98,524 protein–RNA pairs in 20.8 ms