Protein–RNA interactions for Protein: Q7M4L6

SHF, SH2 domain-containing adapter protein F, humanhuman

Predictions only

Length 423 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SHFQ7M4L6 CLIP3-206ENST00000593074 2080 ntAPPRIS P1 TSL 2 BASIC18.19■□□□□ 0.5
SHFQ7M4L6 ST3GAL4-217ENST00000534083 1919 ntAPPRIS ALT1 TSL 5 BASIC18.19■□□□□ 0.5
SHFQ7M4L6 TPD52L1-201ENST00000304877 1468 ntAPPRIS ALT2 TSL 2 BASIC18.19■□□□□ 0.5
SHFQ7M4L6 MIF4GD-202ENST00000325102 1306 ntAPPRIS P1 TSL 2 BASIC18.19■□□□□ 0.5
SHFQ7M4L6 NOP56-201ENST00000329276 2400 ntAPPRIS P1 TSL 1 (best) BASIC18.19■□□□□ 0.5
SHFQ7M4L6 IMPDH1-214ENST00000496200 2283 ntTSL 2 BASIC18.19■□□□□ 0.5
SHFQ7M4L6 TFEB-211ENST00000420312 1996 ntTSL 5 BASIC18.19■□□□□ 0.5
SHFQ7M4L6 INTS11-202ENST00000411962 1832 ntTSL 5 BASIC18.19■□□□□ 0.5
SHFQ7M4L6 LEMD2-201ENST00000293760 2958 ntAPPRIS P1 TSL 1 (best) BASIC18.18■□□□□ 0.5
SHFQ7M4L6 ARHGEF18-202ENST00000359920 5733 ntAPPRIS ALT2 TSL 2 BASIC18.18■□□□□ 0.5
SHFQ7M4L6 KLF2-201ENST00000248071 2018 ntAPPRIS P1 TSL 1 (best) BASIC18.18■□□□□ 0.5
SHFQ7M4L6 AL035252.2-201ENST00000454676 3168 ntTSL 2 BASIC18.18■□□□□ 0.5
SHFQ7M4L6 THOP1-202ENST00000395212 1877 ntTSL 2 BASIC18.18■□□□□ 0.5
SHFQ7M4L6 BMP1-202ENST00000306385 4229 ntAPPRIS P1 TSL 1 (best) BASIC18.18■□□□□ 0.5
SHFQ7M4L6 AGFG2-201ENST00000300176 4796 ntAPPRIS P1 TSL 1 (best) BASIC18.18■□□□□ 0.5
SHFQ7M4L6 EPHX3-202ENST00000435261 1771 ntAPPRIS P1 TSL 1 (best) BASIC18.18■□□□□ 0.5
SHFQ7M4L6 RNF224-201ENST00000445101 1798 ntAPPRIS P1 TSL 3 BASIC18.18■□□□□ 0.5
SHFQ7M4L6 TSPY4-201ENST00000383008 1143 ntAPPRIS ALT2 TSL 5 BASIC18.18■□□□□ 0.5
SHFQ7M4L6 EIF3B-202ENST00000397011 2966 ntAPPRIS P1 TSL 1 (best) BASIC18.18■□□□□ 0.5
SHFQ7M4L6 NMRAL1-202ENST00000404295 1233 ntAPPRIS P1 TSL 1 (best) BASIC18.18■□□□□ 0.5
SHFQ7M4L6 AC105265.2-201ENST00000467189 838 ntBASIC18.18■□□□□ 0.5
SHFQ7M4L6 AC110285.4-201ENST00000572590 424 ntTSL 3 BASIC18.18■□□□□ 0.5
SHFQ7M4L6 MIR2861-201ENST00000636310 90 ntBASIC18.18■□□□□ 0.5
SHFQ7M4L6 ANTXR2-202ENST00000346652 1343 ntTSL 1 (best) BASIC18.18■□□□□ 0.5
SHFQ7M4L6 LMAN1L-201ENST00000309664 1873 ntAPPRIS P1 TSL 1 (best) BASIC18.18■□□□□ 0.5
SHFQ7M4L6 DDAH1-205ENST00000539042 1519 ntAPPRIS P1 TSL 5 BASIC18.18■□□□□ 0.5
SHFQ7M4L6 SMAGP-205ENST00000603864 1518 ntAPPRIS P1 TSL 2 BASIC18.18■□□□□ 0.5
SHFQ7M4L6 POLDIP2-202ENST00000618887 1524 ntTSL 2 BASIC18.18■□□□□ 0.5
SHFQ7M4L6 AP3S1-201ENST00000316788 1730 ntAPPRIS P1 TSL 1 (best) BASIC18.18■□□□□ 0.5
SHFQ7M4L6 AMDHD1-201ENST00000266736 2260 ntAPPRIS P1 TSL 1 (best) BASIC18.18■□□□□ 0.5
SHFQ7M4L6 UBP1-202ENST00000283629 4148 ntAPPRIS P3 TSL 1 (best) BASIC18.17■□□□□ 0.5
SHFQ7M4L6 AC018445.3-201ENST00000624177 1945 ntBASIC18.17■□□□□ 0.5
SHFQ7M4L6 LINC02228-203ENST00000641970 1355 ntBASIC18.17■□□□□ 0.5
SHFQ7M4L6 KIF26A-202ENST00000423312 5649 ntAPPRIS P2 TSL 5 BASIC18.17■□□□□ 0.5
SHFQ7M4L6 FBXO27-201ENST00000292853 2330 ntAPPRIS P2 TSL 1 (best) BASIC18.17■□□□□ 0.5
SHFQ7M4L6 FAM109B-201ENST00000321753 2335 ntAPPRIS P1 TSL 1 (best) BASIC18.17■□□□□ 0.5
SHFQ7M4L6 ACADVL-203ENST00000356839 2323 ntAPPRIS P1 TSL 1 (best) BASIC18.17■□□□□ 0.5
SHFQ7M4L6 ENTPD6-201ENST00000354989 2708 ntAPPRIS ALT2 TSL 1 (best) BASIC18.17■□□□□ 0.5
SHFQ7M4L6 ZBTB42-202ENST00000555360 1411 ntAPPRIS P1 TSL 1 (best) BASIC18.17■□□□□ 0.5
SHFQ7M4L6 NIPAL4-202ENST00000435489 1600 ntAPPRIS ALT2 TSL 2 BASIC18.17■□□□□ 0.5
SHFQ7M4L6 PPM1B-201ENST00000282412 2606 ntAPPRIS P4 TSL 1 (best) BASIC18.17■□□□□ 0.5
SHFQ7M4L6 ASMT-202ENST00000381233 989 ntTSL 1 (best) BASIC18.17■□□□□ 0.5
SHFQ7M4L6 AC093833.1-201ENST00000442821 553 ntTSL 5 BASIC18.17■□□□□ 0.5
SHFQ7M4L6 AC010141.2-201ENST00000452426 721 ntBASIC18.17■□□□□ 0.5
SHFQ7M4L6 AC011511.3-201ENST00000587088 355 ntTSL 2 BASIC18.17■□□□□ 0.5
SHFQ7M4L6 SRRM2-231ENST00000630499 1207 ntTSL 1 (best) BASIC18.17■□□□□ 0.5
SHFQ7M4L6 ETV7-203ENST00000373737 1488 ntAPPRIS ALT2 TSL 1 (best) BASIC18.17■□□□□ 0.5
SHFQ7M4L6 CASTOR1-201ENST00000404953 1460 ntTSL 5 BASIC18.17■□□□□ 0.5
SHFQ7M4L6 ITGBL1-202ENST00000376180 2494 ntAPPRIS P1 TSL 1 (best) BASIC18.17■□□□□ 0.5
SHFQ7M4L6 ZXDB-201ENST00000374888 5894 ntAPPRIS P1 BASIC18.17■□□□□ 0.5
SHFQ7M4L6 RTCA-201ENST00000260563 1534 ntTSL 1 (best) BASIC18.17■□□□□ 0.5
SHFQ7M4L6 MAP2K5-203ENST00000354498 1783 ntTSL 2 BASIC18.17■□□□□ 0.5
SHFQ7M4L6 TMPRSS5-201ENST00000299882 2232 ntAPPRIS P3 TSL 1 (best) BASIC18.17■□□□□ 0.5
SHFQ7M4L6 KBTBD2-201ENST00000304056 3745 ntAPPRIS P1 TSL 1 (best) BASIC18.16■□□□□ 0.5
SHFQ7M4L6 P2RY2-201ENST00000311131 2660 ntAPPRIS P1 TSL 1 (best) BASIC18.16■□□□□ 0.5
SHFQ7M4L6 NFIB-208ENST00000397581 3318 ntTSL 5 BASIC18.16■□□□□ 0.5
SHFQ7M4L6 CLN8-208ENST00000635751 1807 ntAPPRIS P1 TSL 5 BASIC18.16■□□□□ 0.5
SHFQ7M4L6 HAUS4-205ENST00000541587 1637 ntAPPRIS P1 TSL 1 (best) BASIC18.16■□□□□ 0.5
SHFQ7M4L6 TSPAN4-206ENST00000397408 1430 ntAPPRIS P1 TSL 2 BASIC18.16■□□□□ 0.5
SHFQ7M4L6 UMOD-203ENST00000396138 2399 ntAPPRIS ALT2 TSL 5 BASIC18.16■□□□□ 0.5
SHFQ7M4L6 IL11RA-201ENST00000318041 1728 ntAPPRIS P1 TSL 1 (best) BASIC18.16■□□□□ 0.5
SHFQ7M4L6 AK1-201ENST00000223836 736 ntTSL 3 BASIC18.16■□□□□ 0.5
SHFQ7M4L6 RPL8-201ENST00000262584 1041 ntAPPRIS P1 TSL 1 (best) BASIC18.16■□□□□ 0.5
SHFQ7M4L6 MRPL46-201ENST00000312475 1019 ntAPPRIS P1 TSL 1 (best) BASIC18.16■□□□□ 0.5
SHFQ7M4L6 YBEY-204ENST00000397692 433 ntTSL 1 (best) BASIC18.16■□□□□ 0.5
SHFQ7M4L6 DUX4L2-201ENST00000561772 1275 ntBASIC18.16■□□□□ 0.5
SHFQ7M4L6 IGFALS-203ENST00000568221 730 ntTSL 4 BASIC18.16■□□□□ 0.5
SHFQ7M4L6 DUX4-206ENST00000616166 1275 ntAPPRIS P2 BASIC18.16■□□□□ 0.5
SHFQ7M4L6 DUX4L6-201ENST00000626483 1275 ntBASIC18.16■□□□□ 0.5
SHFQ7M4L6 DUX4L1-201ENST00000627662 1275 ntBASIC18.16■□□□□ 0.5
SHFQ7M4L6 DUX4L8-201ENST00000629013 1275 ntBASIC18.16■□□□□ 0.5
SHFQ7M4L6 DUX4L3-201ENST00000630187 1275 ntBASIC18.16■□□□□ 0.5
SHFQ7M4L6 DUX4L7-201ENST00000630678 1275 ntBASIC18.16■□□□□ 0.5
SHFQ7M4L6 DUX4L5-201ENST00000630834 1275 ntBASIC18.16■□□□□ 0.5
SHFQ7M4L6 PCDHB12-203ENST00000624949 1963 ntTSL 2 BASIC18.16■□□□□ 0.5
SHFQ7M4L6 FMN2-201ENST00000319653 6434 ntAPPRIS P1 TSL 5 BASIC18.16■□□□□ 0.5
SHFQ7M4L6 MEN1-208ENST00000394374 3155 ntAPPRIS P3 TSL 5 BASIC18.16■□□□□ 0.5
SHFQ7M4L6 FDXR-219ENST00000583917 1762 ntTSL 5 BASIC18.16■□□□□ 0.5
SHFQ7M4L6 RNF8-204ENST00000469731 1800 ntTSL 5 BASIC18.16■□□□□ 0.5
SHFQ7M4L6 C14orf79-202ENST00000547315 2370 ntAPPRIS P2 TSL 1 (best) BASIC18.16■□□□□ 0.5
SHFQ7M4L6 PNKP-214ENST00000600573 1602 ntTSL 5 BASIC18.16■□□□□ 0.5
SHFQ7M4L6 STX6-204ENST00000542060 4809 ntTSL 2 BASIC18.15■□□□□ 0.5
SHFQ7M4L6 DLG3-202ENST00000374355 5074 ntTSL 1 (best) BASIC18.15■□□□□ 0.5
SHFQ7M4L6 AP002748.1-201ENST00000504911 580 ntTSL 3 BASIC18.15■□□□□ 0.5
SHFQ7M4L6 GTF3C5-202ENST00000372097 2406 ntAPPRIS P3 TSL 1 (best) BASIC18.15■□□□□ 0.5
SHFQ7M4L6 TMEM235-201ENST00000374946 2409 ntTSL 5 BASIC18.15■□□□□ 0.5
SHFQ7M4L6 EIF3J-202ENST00000424492 1550 ntTSL 4 BASIC18.15■□□□□ 0.5
SHFQ7M4L6 MFSD7-204ENST00000503156 1632 ntAPPRIS ALT2 TSL 5 BASIC18.15■□□□□ 0.5
SHFQ7M4L6 REPS1-203ENST00000409812 2511 ntTSL 1 (best) BASIC18.15■□□□□ 0.5
SHFQ7M4L6 GABRD-201ENST00000378585 1961 ntAPPRIS P2 TSL 1 (best) BASIC18.15■□□□□ 0.5
SHFQ7M4L6 FGFRL1-203ENST00000504138 1663 ntAPPRIS P1 TSL 1 (best) BASIC18.15■□□□□ 0.5
SHFQ7M4L6 MED25-201ENST00000312865 2332 ntAPPRIS P1 TSL 1 (best) BASIC18.15■□□□□ 0.5
SHFQ7M4L6 MYO15B-232ENST00000610510 9195 ntAPPRIS P1 TSL 5 BASIC18.15■□□□□ 0.5
SHFQ7M4L6 PDLIM5-205ENST00000380180 2020 ntTSL 1 (best) BASIC18.15■□□□□ 0.5
SHFQ7M4L6 MTUS2-202ENST00000380808 1793 ntAPPRIS P3 TSL 1 (best) BASIC18.14■□□□□ 0.5
SHFQ7M4L6 NTRK1-206ENST00000524377 2432 ntAPPRIS P3 TSL 1 (best) BASIC18.14■□□□□ 0.5
SHFQ7M4L6 NAE1-201ENST00000290810 1837 ntAPPRIS P1 TSL 1 (best) BASIC18.14■□□□□ 0.5
SHFQ7M4L6 NHLH2-201ENST00000320238 2512 ntAPPRIS P1 TSL 1 (best) BASIC18.14■□□□□ 0.49
SHFQ7M4L6 PNMA8B-202ENST00000599531 5308 ntAPPRIS P1 BASIC18.14■□□□□ 0.49
SHFQ7M4L6 PIANP-201ENST00000320591 2323 ntAPPRIS P3 TSL 1 (best) BASIC18.14■□□□□ 0.49
Retrieved 100 of 98,524 protein–RNA pairs in 31.7 ms