Protein–RNA interactions for Protein: Q6A162

KRT40, Keratin, type I cytoskeletal 40, humanhuman

Predictions only

Length 431 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
KRT40Q6A162 AC069236.1-201ENST00000604339 616 ntBASIC23.38■■□□□ 1.33
KRT40Q6A162 IGFBP3-211ENST00000615754 792 ntTSL 5 BASIC23.38■■□□□ 1.33
KRT40Q6A162 CIRBP-246ENST00000628979 1043 ntTSL 2 BASIC23.38■■□□□ 1.33
KRT40Q6A162 ARHGAP8-204ENST00000389774 1725 ntAPPRIS ALT2 TSL 2 BASIC23.38■■□□□ 1.33
KRT40Q6A162 RASSF7-204ENST00000431809 1745 ntAPPRIS ALT2 TSL 5 BASIC23.38■■□□□ 1.33
KRT40Q6A162 FLT1-204ENST00000541932 2969 ntTSL 1 (best) BASIC23.38■■□□□ 1.33
KRT40Q6A162 MRPL40-201ENST00000333130 1387 ntAPPRIS P1 TSL 1 (best) BASIC23.38■■□□□ 1.33
KRT40Q6A162 DPP3P2-201ENST00000416030 1696 ntBASIC23.38■■□□□ 1.33
KRT40Q6A162 TACC3-213ENST00000617535 1693 ntTSL 5 BASIC23.38■■□□□ 1.33
KRT40Q6A162 PCDHB12-202ENST00000622978 2093 ntTSL 2 BASIC23.37■■□□□ 1.33
KRT40Q6A162 STK25-205ENST00000405883 1904 ntTSL 2 BASIC23.37■■□□□ 1.33
KRT40Q6A162 TMPRSS5-212ENST00000545579 2163 ntAPPRIS ALT2 TSL 1 (best) BASIC23.37■■□□□ 1.33
KRT40Q6A162 MAF-202ENST00000393350 6384 ntAPPRIS ALT2 BASIC23.37■■□□□ 1.33
KRT40Q6A162 FAM213A-202ENST00000372185 1723 ntTSL 2 BASIC23.37■■□□□ 1.33
KRT40Q6A162 IKZF1-209ENST00000438033 1748 ntTSL 2 BASIC23.37■■□□□ 1.33
KRT40Q6A162 ATG101-201ENST00000336854 1439 ntAPPRIS P1 TSL 1 (best) BASIC23.37■■□□□ 1.33
KRT40Q6A162 MTHFS-201ENST00000258874 907 ntAPPRIS P1 TSL 1 (best) BASIC23.37■■□□□ 1.33
KRT40Q6A162 POU5F1P3-201ENST00000428824 1078 ntBASIC23.37■■□□□ 1.33
KRT40Q6A162 OVCH1-AS1-203ENST00000551108 963 ntTSL 2 BASIC23.37■■□□□ 1.33
KRT40Q6A162 ST6GAL2-203ENST00000409087 1657 ntTSL 1 (best) BASIC23.37■■□□□ 1.33
KRT40Q6A162 ACHE-204ENST00000412389 2218 ntAPPRIS P1 TSL 1 (best) BASIC23.37■■□□□ 1.33
KRT40Q6A162 ENTPD2-201ENST00000312665 1500 ntTSL 1 (best) BASIC23.37■■□□□ 1.33
KRT40Q6A162 GNG4-203ENST00000391854 5104 ntAPPRIS P1 TSL 1 (best) BASIC23.37■■□□□ 1.33
KRT40Q6A162 YIPF2-201ENST00000253031 2087 ntAPPRIS P1 TSL 1 (best) BASIC23.37■■□□□ 1.33
KRT40Q6A162 GNA14-201ENST00000341700 2482 ntAPPRIS P1 TSL 1 (best) BASIC23.37■■□□□ 1.33
KRT40Q6A162 TSTA3-201ENST00000425753 1362 ntAPPRIS P1 TSL 1 (best) BASIC23.37■■□□□ 1.33
KRT40Q6A162 MAP7D2-203ENST00000443379 2476 ntAPPRIS ALT2 TSL 2 BASIC23.37■■□□□ 1.33
KRT40Q6A162 LEF1-203ENST00000438313 1488 ntAPPRIS ALT1 TSL 1 (best) BASIC23.36■■□□□ 1.33
KRT40Q6A162 SPG7-202ENST00000341316 2288 ntTSL 1 (best) BASIC23.36■■□□□ 1.33
KRT40Q6A162 NTNG2-202ENST00000393229 4792 ntAPPRIS P1 TSL 1 (best) BASIC23.36■■□□□ 1.33
KRT40Q6A162 RTBDN-207ENST00000589272 2076 ntTSL 2 BASIC23.36■■□□□ 1.33
KRT40Q6A162 FTCDNL1-202ENST00000420128 1021 ntTSL 5 BASIC23.36■■□□□ 1.33
KRT40Q6A162 SNX3-201ENST00000230085 1755 ntAPPRIS P1 TSL 1 (best) BASIC23.36■■□□□ 1.33
KRT40Q6A162 NRXN2-204ENST00000377559 6413 ntAPPRIS ALT2 TSL 1 (best) BASIC23.36■■□□□ 1.33
KRT40Q6A162 ENOSF1-201ENST00000251101 1867 ntAPPRIS P1 TSL 1 (best) BASIC23.36■■□□□ 1.33
KRT40Q6A162 MFSD10-206ENST00000508221 1639 ntTSL 5 BASIC23.36■■□□□ 1.33
KRT40Q6A162 RWDD4-206ENST00000512740 1393 ntTSL 5 BASIC23.36■■□□□ 1.33
KRT40Q6A162 CHD1L-201ENST00000361293 2484 ntTSL 2 BASIC23.36■■□□□ 1.33
KRT40Q6A162 ST3GAL4-209ENST00000526727 1967 ntAPPRIS ALT1 TSL 1 (best) BASIC23.36■■□□□ 1.33
KRT40Q6A162 ADRM1-201ENST00000253003 1478 ntAPPRIS P1 TSL 1 (best) BASIC23.36■■□□□ 1.33
KRT40Q6A162 AP000679.1-202ENST00000319763 2081 ntTSL 1 (best) BASIC23.36■■□□□ 1.33
KRT40Q6A162 PCDHAC2-203ENST00000615316 3011 ntBASIC23.35■■□□□ 1.33
KRT40Q6A162 TMEM176B-203ENST00000434545 1303 ntAPPRIS P1 TSL 1 (best) BASIC23.35■■□□□ 1.33
KRT40Q6A162 ODC1-202ENST00000405333 1943 ntAPPRIS P1 TSL 2 BASIC23.35■■□□□ 1.33
KRT40Q6A162 ACAT1-201ENST00000265838 1761 ntAPPRIS P1 TSL 1 (best) BASIC23.35■■□□□ 1.33
KRT40Q6A162 HMOX2-208ENST00000570646 2147 ntAPPRIS P1 TSL 1 (best) BASIC23.35■■□□□ 1.33
KRT40Q6A162 GALNT10-202ENST00000377661 3778 ntTSL 5 BASIC23.35■■□□□ 1.33
KRT40Q6A162 NPAS3-210ENST00000551492 2817 ntAPPRIS ALT2 TSL 5 BASIC23.35■■□□□ 1.33
KRT40Q6A162 AL445183.2-201ENST00000439621 1871 ntTSL 2 BASIC23.35■■□□□ 1.33
KRT40Q6A162 PDZD3-201ENST00000322712 2204 ntTSL 1 (best) BASIC23.35■■□□□ 1.33
KRT40Q6A162 AL390879.2-201ENST00000424306 2222 ntTSL 2 BASIC23.35■■□□□ 1.33
KRT40Q6A162 TMEM243-201ENST00000257637 1063 ntAPPRIS P1 TSL 1 (best) BASIC23.35■■□□□ 1.33
KRT40Q6A162 PRORSD1P-201ENST00000295112 541 ntBASIC23.35■■□□□ 1.33
KRT40Q6A162 AL355472.2-201ENST00000422958 438 ntBASIC23.35■■□□□ 1.33
KRT40Q6A162 C19orf81-201ENST00000425202 765 ntAPPRIS P2 TSL 5 BASIC23.35■■□□□ 1.33
KRT40Q6A162 AC093787.1-201ENST00000450396 207 ntBASIC23.35■■□□□ 1.33
KRT40Q6A162 HMX1-202ENST00000506970 651 ntTSL 1 (best) BASIC23.35■■□□□ 1.33
KRT40Q6A162 PRORSD1P-203ENST00000579162 626 ntTSL 5 BASIC23.35■■□□□ 1.33
KRT40Q6A162 OR10C1-204ENST00000622521 1039 ntBASIC23.35■■□□□ 1.33
KRT40Q6A162 AC008694.1-202ENST00000636953 945 ntBASIC23.35■■□□□ 1.33
KRT40Q6A162 AC133041.1-202ENST00000642053 222 ntBASIC23.35■■□□□ 1.33
KRT40Q6A162 AC016065.1-201ENST00000500118 2413 ntTSL 2 BASIC23.35■■□□□ 1.33
KRT40Q6A162 GRTP1-203ENST00000375431 1384 ntAPPRIS P3 TSL 1 (best) BASIC23.35■■□□□ 1.33
KRT40Q6A162 KRTAP5-AS1-201ENST00000424148 2265 ntTSL 2 BASIC23.35■■□□□ 1.33
KRT40Q6A162 MAZ-214ENST00000568544 1464 ntTSL 2 BASIC23.35■■□□□ 1.33
KRT40Q6A162 CERKL-201ENST00000339098 1677 ntAPPRIS P3 TSL 1 (best) BASIC23.35■■□□□ 1.33
KRT40Q6A162 MKRN1-208ENST00000474576 1661 ntTSL 5 BASIC23.35■■□□□ 1.33
KRT40Q6A162 TPST2-202ENST00000398110 1968 ntAPPRIS P1 TSL 2 BASIC23.34■■□□□ 1.33
KRT40Q6A162 SLC39A5-209ENST00000454355 1968 ntAPPRIS P1 TSL 1 (best) BASIC23.34■■□□□ 1.33
KRT40Q6A162 RASL12-201ENST00000220062 2640 ntAPPRIS P1 TSL 1 (best) BASIC23.34■■□□□ 1.33
KRT40Q6A162 ARHGEF7-202ENST00000317133 4361 ntAPPRIS ALT2 TSL 1 (best) BASIC23.34■■□□□ 1.33
KRT40Q6A162 GOLGA4-212ENST00000617480 1545 ntTSL 5 BASIC23.34■■□□□ 1.33
KRT40Q6A162 PAQR9-201ENST00000340634 2452 ntAPPRIS P1 BASIC23.34■■□□□ 1.33
KRT40Q6A162 VPS53-201ENST00000291074 2656 ntTSL 1 (best) BASIC23.34■■□□□ 1.33
KRT40Q6A162 NSDHL-201ENST00000370274 1929 ntAPPRIS P2 TSL 1 (best) BASIC23.34■■□□□ 1.33
KRT40Q6A162 SSNA1-201ENST00000322310 896 ntAPPRIS P1 TSL 1 (best) BASIC23.34■■□□□ 1.33
KRT40Q6A162 IPO13-201ENST00000372339 1201 ntTSL 2 BASIC23.34■■□□□ 1.33
KRT40Q6A162 RPS2P52-201ENST00000469610 820 ntBASIC23.34■■□□□ 1.33
KRT40Q6A162 HTT-AS-201ENST00000503893 515 ntTSL 4 BASIC23.34■■□□□ 1.33
KRT40Q6A162 LIMD2-202ENST00000578061 756 ntAPPRIS P1 TSL 2 BASIC23.34■■□□□ 1.33
KRT40Q6A162 CYP2T3P-201ENST00000601990 817 ntBASIC23.34■■□□□ 1.33
KRT40Q6A162 ITM2C-210ENST00000620962 501 ntBASIC23.34■■□□□ 1.33
KRT40Q6A162 KIAA0895L-206ENST00000563902 2233 ntAPPRIS P1 TSL 1 (best) BASIC23.34■■□□□ 1.33
KRT40Q6A162 GCK-205ENST00000437084 1385 ntTSL 5 BASIC23.34■■□□□ 1.33
KRT40Q6A162 SPHK2-213ENST00000601712 1394 ntAPPRIS ALT2 TSL 5 BASIC23.34■■□□□ 1.33
KRT40Q6A162 PRELID3B-201ENST00000355937 2626 ntAPPRIS P1 TSL 1 (best) BASIC23.34■■□□□ 1.33
KRT40Q6A162 SLC25A24P1-201ENST00000411846 1569 ntTSL 5 BASIC23.34■■□□□ 1.33
KRT40Q6A162 SOX8-201ENST00000293894 3049 ntAPPRIS P1 TSL 1 (best) BASIC23.34■■□□□ 1.33
KRT40Q6A162 SUMF2-201ENST00000275607 1894 ntTSL 1 (best) BASIC23.34■■□□□ 1.33
KRT40Q6A162 MAP3K14-AS1-203ENST00000585780 2475 ntTSL 2 BASIC23.34■■□□□ 1.33
KRT40Q6A162 AC010980.2-201ENST00000587099 1412 ntBASIC23.33■■□□□ 1.33
KRT40Q6A162 SERBP1-201ENST00000361219 2103 ntAPPRIS ALT1 TSL 1 (best) BASIC23.33■■□□□ 1.33
KRT40Q6A162 EYA2-202ENST00000327619 2702 ntAPPRIS P1 TSL 2 BASIC23.33■■□□□ 1.33
KRT40Q6A162 PCSK6-217ENST00000618548 4269 ntAPPRIS ALT2 TSL 1 (best) BASIC23.33■■□□□ 1.33
KRT40Q6A162 HDAC2-201ENST00000368632 2084 ntTSL 2 BASIC23.33■■□□□ 1.33
KRT40Q6A162 IRF7-205ENST00000397574 1968 ntAPPRIS ALT2 TSL 1 (best) BASIC23.33■■□□□ 1.33
KRT40Q6A162 ZNF852-201ENST00000436261 1968 ntAPPRIS P1 TSL 2 BASIC23.33■■□□□ 1.33
KRT40Q6A162 SLC35A3-222ENST00000640715 1989 ntTSL 5 BASIC23.33■■□□□ 1.33
KRT40Q6A162 ARHGEF4-202ENST00000355771 1872 ntAPPRIS ALT2 TSL 1 (best) BASIC23.33■■□□□ 1.33
KRT40Q6A162 ACBD4-202ENST00000376955 1453 ntTSL 2 BASIC23.33■■□□□ 1.33
Retrieved 100 of 98,524 protein–RNA pairs in 24.8 ms